prot_Ecto-sp13_S_contig9167.20737.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9167.20737.1
Unique Nameprot_Ecto-sp13_S_contig9167.20737.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length155
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9167.20737.1 vs. uniprot
Match: D7FXE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE8_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.080e-96
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 0 
Query:    1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIIKLLLGENSKVGEGAACSGVILQQLCPLYLGMAALNMWSWGMGSEIRPKVALANIFSMAGVLYAHSHPPNSSMFNSVPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARSARTKKNA 154
            MVGALKVVLPVLGVAQIVLASLYADPGFQKMI+KLLLGENSK GEGAACSGVILQQLCPLYLGMAALN+WSWGMGSEIRPKVALANIFSMAGVLYAHS  PNSSMFNS PVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKAR+A TKKNA
Sbjct:    1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKAGEGAACSGVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYAHSRAPNSSMFNSAPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARTAGTKKNA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9167.20737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXE8_ECTSI3.080e-9694.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 71..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 128..154
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..70
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.676
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 7..24
NoneNo IPR availableTMHMMTMhelixcoord: 109..128
NoneNo IPR availableTMHMMTMhelixcoord: 82..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9167contigEcto-sp13_S_contig9167:659..3011 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9167.20737.1mRNA_Ecto-sp13_S_contig9167.20737.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9167 659..3011 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9167.20737.1 ID=prot_Ecto-sp13_S_contig9167.20737.1|Name=mRNA_Ecto-sp13_S_contig9167.20737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MVGALKVVLPVLGVAQIVLASLYADPGFQKMIIKLLLGENSKVGEGAACS
GVILQQLCPLYLGMAALNMWSWGMGSEIRPKVALANIFSMAGVLYAHSHP
PNSSMFNSVPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARSART
KKNA*
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