mRNA_Ecto-sp13_S_contig9167.20737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9167.20737.1
Unique NamemRNA_Ecto-sp13_S_contig9167.20737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9167.20737.1 vs. uniprot
Match: D7FXE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE8_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.080e-96
Identity = 146/154 (94.81%), Postives = 149/154 (96.75%), Query Frame = 1 
Query:    1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIIKLLLGENSKVGEGAACSGVILQQLCPLYLGMAALNMWSWGMGSEIRPKVALANIFSMAGVLYAHSHPPNSSMFNSVPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARSARTKKNA 462
            MVGALKVVLPVLGVAQIVLASLYADPGFQKMI+KLLLGENSK GEGAACSGVILQQLCPLYLGMAALN+WSWGMGSEIRPKVALANIFSMAGVLYAHS  PNSSMFNS PVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKAR+A TKKNA
Sbjct:    1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKAGEGAACSGVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYAHSRAPNSSMFNSAPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARTAGTKKNA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9167.20737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXE8_ECTSI3.080e-9694.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9167contigEcto-sp13_S_contig9167:659..3011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size465
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002940.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.298485-CDS-Ecto-sp13_S_contig9167:658..7361681464188.298485-CDS-Ecto-sp13_S_contig9167:658..736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9167 659..736 -
1681464188.309752-CDS-Ecto-sp13_S_contig9167:1280..14241681464188.309752-CDS-Ecto-sp13_S_contig9167:1280..1424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9167 1281..1424 -
1681464188.3207793-CDS-Ecto-sp13_S_contig9167:2077..22271681464188.3207793-CDS-Ecto-sp13_S_contig9167:2077..2227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9167 2078..2227 -
1681464188.3319278-CDS-Ecto-sp13_S_contig9167:2918..30111681464188.3319278-CDS-Ecto-sp13_S_contig9167:2918..3011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9167 2919..3011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9167.20737.1prot_Ecto-sp13_S_contig9167.20737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9167 659..3011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9167.20737.1

>prot_Ecto-sp13_S_contig9167.20737.1 ID=prot_Ecto-sp13_S_contig9167.20737.1|Name=mRNA_Ecto-sp13_S_contig9167.20737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MVGALKVVLPVLGVAQIVLASLYADPGFQKMIIKLLLGENSKVGEGAACS
GVILQQLCPLYLGMAALNMWSWGMGSEIRPKVALANIFSMAGVLYAHSHP
PNSSMFNSVPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARSART
KKNA*
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mRNA from alignment at Ecto-sp13_S_contig9167:659..3011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9167.20737.1 ID=mRNA_Ecto-sp13_S_contig9167.20737.1|Name=mRNA_Ecto-sp13_S_contig9167.20737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9167:659..3011- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGAGCGCTGAAGGTCGTGCTGCCTGTGCTCGGGGTAGCGCAGAT
TGTGCTAGCCTCGCTTTACGCTGACCCTGGCTTTCAGAAGATGGTGAGCA
GCAGCGCGATAACGTGCTTGGCTTCACCAAAACTACGGATTCGTACGCAT
TGCTAGAGAGATGCCACGCAGTTATGACACCCGCATGAAGAAACTACTTG
GTTGACACCACTCCCCCACTCGCTACACAACAGTGCCAAACACCACCCTG
ACCTGTGTCGTTTGTGCGGTTTGTCACCCCTTTTGAGCGTTCGCGACCTT
GGCCGAACGATGTACCTCGTAGACCAGATTCTGGTTTTCGATGCTGTTTG
ACTGAAAAGTGCATCGACGCTTGATAAGCTGCTGTGGATGTTTCCCCCTG
CGAAATAAGGAGCTTCTTCTATGTCCCCCGGGTTTCATCCATGCGCAATG
GCACTTCTGGTATTTTGTTTCGAATTGCAAATCGGCGTCACAATCTTACG
AAACTGCTGTATTCCCTGCACCCTAGCACACGAGATATTCTTAGTGTATA
GGAGAATGATTCAGTCGATATATATGTATGTTTGGTCTGCCTCATGCGCT
TTCGCTACCCAGGGTGTATGCTGACGGAAGCTTGAGTACACTTGGTGCCA
CTATTGTAACTGCTCACCTCAGCGTTCGGGAGACTACAAGTGCAGCCCCT
CCTTTTGTGAACCGTTTCCAACGTGTTCCGTTTCCAACGCGTTCACCACA
CAAATCACTTTTCTGTCCCTTCGTATCTGTGCAGATTATCAAGCTATTAC
TTGGAGAAAACTCGAAGGTGGGCGAAGGTGCCGCTTGCAGTGGGGTGATC
CTACAGCAACTTTGCCCTCTGTACCTGGGAATGGCGGCTTTGAACATGTG
GAGTTGGGGAATGGGGAGCGAGATAAGGCCTAAGGTAAACCATAATTAAG
CATTCGACGTAGGAAAATCGCAAACGTGCGTGAACGCGCGCACGCTACAG
TGTTGCCCACCTTGTGCTAGGCCATCCGTACCCTTGCCCTTCACCGTAAA
AGCTACCGCATCTGCAATCATGACTTTCTCCCAAAATGCAGACACCTAAA
TGGGTGCGCCTCGGATCCTGCCAGCCTCGCGGAGTTAGTTCCTTGAGTAG
CCCGCAAAGAGGCGTTTTTGGATGTATGTACAACTTCTGATCATCAAATA
TATTCGTCTCATTCATGCCTCCCCATGTATCTCACTGTTATTTCGCGGCA
TCAAGGCAACACTCACTCCTTGAGCAGCTGATCCATAGGCTCGCTTGGAG
GTGAATTCCCAACCTTTCACGAGAGAAGAATTAGGAAGCCAAAGCTAAAT
CGCACTCGCTGATTCACAAGGAAGTAGCGAAAATCCGAAACCATGGGAAG
AGTAAGCAAGCGGACAATCGAAGACACACCGGGTAAGAGGCTGACCGAGG
ACTGATGAGTGTCAAGCTAAAGGCTGGCCGCAACGGAATTGAACACGCTT
GGGAGAATGGGTACCAACAACGACAATTCCACAATAGCATTTGCCAACCA
AACACTCTCTGGGCTGCGCTGTACCGTTCGCTATCAGGTGGCGTTGGCCA
ACATATTTTCGATGGCAGGAGTGCTATACGCGCACTCCCACCCTCCCAAT
TCGTCCATGTTCAACTCTGTGCCGGTGTGGGTGAGCGTGGCTGGCCTTGT
CGCCGTGGTGGCCGGCCTTGTCCTTCATCAGGTATGCGGTCCCCCGTTTT
TTTTCCCAGGGTTCAGCACCTATTTCGCTTGAAGCATCTGTCCATCGCAC
CTCACTGAGTTGTAGTCATCGTTCGGATGATGTGCGTCTTTCTTGAGCAA
GAGCCCGTGTCGAGGCGTCGCATGGTCCGGAGGGCCTCTGTTCGAACCAA
GCAATCGATGCTGTCATAGATCTTGAGCAAGAGCTCGTGTCGAGGCTTCG
CATGGTCTGGAGGGCTTCTATTCGAACCAAATAATCGACGTTGTTCTACG
GTATCACGACGTGCATTGCAATCGTCTCTCCGACTCTCCGTGGACCCTAT
GAACCGAAAATTCTGGCTCGTGCCATCGAATTAGCGCGTGAAGAACGTCA
CCGCGCGTTCAGTCTCGACAGACGCAATTCGGGGCTGCTGTGCTAGGGAT
TATGCGAGCGGCGTAGAATCAGACTGCTGACGAATGATACGAATTTCGCG
TTCTCCGCCCCGACGTCACTGCCTCTCTCCTTTGCTTGTTGACGGGCAAT
CGACTGGTGCTCCCCATGTGTACAGCTTGAACCGGGCCTACTGACCGAAG
ACAAGGCCTCCACCACTAAGGCAAGAAGTGCCAGGACCAAGAAGAACGCC
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9167:659..3011-

>mRNA_Ecto-sp13_S_contig9167.20737.1 ID=mRNA_Ecto-sp13_S_contig9167.20737.1|Name=mRNA_Ecto-sp13_S_contig9167.20737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9167:659..3011- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGAGCGCTGAAGGTCGTGCTGCCTGTGCTCGGGGTAGCGCAGAT
TGTGCTAGCCTCGCTTTACGCTGACCCTGGCTTTCAGAAGATGATTATCA
AGCTATTACTTGGAGAAAACTCGAAGGTGGGCGAAGGTGCCGCTTGCAGT
GGGGTGATCCTACAGCAACTTTGCCCTCTGTACCTGGGAATGGCGGCTTT
GAACATGTGGAGTTGGGGAATGGGGAGCGAGATAAGGCCTAAGGTGGCGT
TGGCCAACATATTTTCGATGGCAGGAGTGCTATACGCGCACTCCCACCCT
CCCAATTCGTCCATGTTCAACTCTGTGCCGGTGTGGGTGAGCGTGGCTGG
CCTTGTCGCCGTGGTGGCCGGCCTTGTCCTTCATCAGCTTGAACCGGGCC
TACTGACCGAAGACAAGGCCTCCACCACTAAGGCAAGAAGTGCCAGGACC
AAGAAGAACGCCTAA
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