mRNA_Ecto-sp13_S_contig9164.20736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9164.20736.1
Unique NamemRNA_Ecto-sp13_S_contig9164.20736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9164.20736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9164contigEcto-sp13_S_contig9164:4444..4863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005425.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.2716606-CDS-Ecto-sp13_S_contig9164:4443..48631681464188.2716606-CDS-Ecto-sp13_S_contig9164:4443..4863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9164 4444..4863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9164.20736.1prot_Ecto-sp13_S_contig9164.20736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9164 4444..4863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9164.20736.1

>prot_Ecto-sp13_S_contig9164.20736.1 ID=prot_Ecto-sp13_S_contig9164.20736.1|Name=mRNA_Ecto-sp13_S_contig9164.20736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MFSTAPEEAGVTNTHAKQQQQQQQPSPAATVDSDRTAGGGGGEGGSDDYE
NPLSPSDGNASINAGIITTVAEFAHPGQYLFFALVSRSWKGAWDRSNRAK
VTTYLPHPSCSGGGCTRKECHGPPPIELITFLSVVWKLSC
back to top

mRNA from alignment at Ecto-sp13_S_contig9164:4444..4863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9164.20736.1 ID=mRNA_Ecto-sp13_S_contig9164.20736.1|Name=mRNA_Ecto-sp13_S_contig9164.20736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9164:4444..4863+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCGACTGCACCCGAAGAAGCCGGGGTCACCAACACACACGCCAA
GCAGCAGCAGCAGCAGCAGCAGCCATCGCCAGCAGCAACAGTTGACAGCG
ATCGCACCGCAGGAGGAGGAGGAGGAGAAGGAGGCAGCGATGACTACGAG
AACCCGCTCTCCCCCTCCGACGGTAACGCCAGCATCAACGCCGGCATCAT
CACGACGGTGGCCGAGTTCGCACATCCGGGGCAGTACCTCTTCTTCGCCC
TCGTCTCCAGGAGCTGGAAGGGCGCCTGGGACAGGAGCAACCGGGCGAAG
GTCACCACCTACCTCCCACACCCCAGCTGCTCCGGAGGTGGGTGTACCAG
GAAAGAATGCCACGGTCCACCCCCGATAGAATTGATCACCTTTCTTTCTG
TTGTGTGGAAACTCTCTTGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9164:4444..4863+

>mRNA_Ecto-sp13_S_contig9164.20736.1 ID=mRNA_Ecto-sp13_S_contig9164.20736.1|Name=mRNA_Ecto-sp13_S_contig9164.20736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9164:4444..4863+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCGACTGCACCCGAAGAAGCCGGGGTCACCAACACACACGCCAA
GCAGCAGCAGCAGCAGCAGCAGCCATCGCCAGCAGCAACAGTTGACAGCG
ATCGCACCGCAGGAGGAGGAGGAGGAGAAGGAGGCAGCGATGACTACGAG
AACCCGCTCTCCCCCTCCGACGGTAACGCCAGCATCAACGCCGGCATCAT
CACGACGGTGGCCGAGTTCGCACATCCGGGGCAGTACCTCTTCTTCGCCC
TCGTCTCCAGGAGCTGGAAGGGCGCCTGGGACAGGAGCAACCGGGCGAAG
GTCACCACCTACCTCCCACACCCCAGCTGCTCCGGAGGTGGGTGTACCAG
GAAAGAATGCCACGGTCCACCCCCGATAGAATTGATCACCTTTCTTTCTG
TTGTGTGGAAACTCTCTTGT
back to top