mRNA_Ecto-sp13_S_contig9163.20735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI) HSP 1 Score: 680 bits (1755), Expect = 3.460e-240 Identity = 365/410 (89.02%), Postives = 371/410 (90.49%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLREVLAKARADGAPFTSVVGVRPTGWTHTNVRKGGEGGGKAGGIQSSIGGRAASAAAGGQAVRSGDEGRGEAGKEGSGITSSSKPQDGVGDDISGEPELLSGWEEQDDEAAAWGAGLEEDENEETVQVATNGVGVLPXXXXXXXXXXAVAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK 1230
MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGF+LTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVV SLKGRLDSLYLDTTYCGPRHTFPDQSEVL QATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK DTNSP TLRE L KARA GAPFTSVVGVRPTGWTHTN RKG G I+SSIGGR+ GG AVRSG E R E GKEGSGITSSSKPQD VGDDISGEPELLS WE+QDDEAAAWGAGLEED NEET+QV NGVGV+PXXXXXXXXXX VAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK
Sbjct: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFDLTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEVLAQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK--------DTNSPATLREALTKARAGGAPFTSVVGVRPTGWTHTNARKGXXXXXXXG-IKSSIGGRSXXXXXGGPAVRSGAEEREETGKEGSGITSSSKPQDSVGDDISGEPELLSEWEDQDDEAAAWGAGLEEDGNEETMQVTANGVGVVPXXXXXXXXXXTVAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK 401
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO) HSP 1 Score: 223 bits (568), Expect = 8.910e-62 Identity = 123/279 (44.09%), Postives = 158/279 (56.63%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGG-----RTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLR---------EVLAK----------------------ARADGAPFTSVVGVRPTGWT 729
MA Q E IKWV +PFMVDGFRF PRC+HY L+H+HSDHT GL SFSAG IYCS TANL+V+ M +N + LP+DTP+LV G +TLIDANHCP AV+F+ + P P G + LHTGD R + R+P + K R+D L+LDTTY P+H FP Q + +++R E P TLF+VG+Y IGKE+ AKA G + ++ + LR +L K R G +T VV RPTGW+
Sbjct: 1 MAEQVENIKWVPNTPFMVDGFRFQTPRCKHYWLSHYHSDHTIGLSTSFSAGTIYCSKVTANLLVKDMRINPSCIQPLPLDTPLLVDGVHVTLIDANHCPGAVLFLFKTPAPPGSEFPEQVILHTGDMRWHPRMGRHPALA--KQRIDMLFLDTTYASPKHVFPCQENAIADIVKVMRKERDAHPRTLFIVGSYRIGKERAYLGAAKALGWKVYVNADKLRVLRLLGLPDSDMALLTKDAAAAQIHVSFMGKLLTPDALTERIRGTKWTHVVAFRPTGWS 277
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI) HSP 1 Score: 216 bits (550), Expect = 1.210e-58 Identity = 118/277 (42.60%), Postives = 155/277 (55.96%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTT---LHTGDFRAAESVCRNPVVMSLKGRL-DSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRY----------------DLDTNSP--------------VTLREVLAKARADGAPFTSVVGVRPTGWT 729
MA Q E IKW+ G+ FMVDGF+F N RCR Y LTHFHSDHT GLY+SF++G I+CS TA L++ MG+ + + LPMD V + G E+T +DANHCP +VM + + P GGR LHTGDFR E + P SL+ L D++YLDTTY PRHTFP Q + + +L R L + LF+ G Y IGKE+ + AKA G R D+D +P V +L + + G + V+G RPTGW+
Sbjct: 1 MALQQEAIKWIAGTDFMVDGFKFQNLRCRRYFLTHFHSDHTIGLYRSFNSGTIFCSRITAALLINCMGLRSDCIQVLPMDKTVTIDGVEVTALDANHCPGSVMLLFKVPGHGGRPAQVILHTGDFRYHERMADYP---SLRNTLIDTIYLDTTYAYPRHTFPSQEDAIATTVRLCRKHLLDEARPLFVFGAYQIGKERAVIGAAKALGLRVHIEPRKRRILSLLDLQDMDLFTPNAADADIHLGFMSEVRPPAMLRRLKEGGGKWAQVIGFRPTGWS 274
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: I0YMI9_COCSC (DRMBL-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMI9_COCSC) HSP 1 Score: 198 bits (504), Expect = 7.520e-57 Identity = 109/269 (40.52%), Postives = 153/269 (56.88%), Query Frame = 1
Query: 31 VEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGG-----RTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLREV------LAKARADGA-------------------------PFTSVVGVRPTGWT 729
V + FMVDGFRF + RC+HY L+H+HSDHTTGL SFS+G IYCS TANL+V+ M +N + LP++ P+LV G +TLIDANHCP AV+F+ + P P G + LHTGD R + R+P + + R+D L+LDTTY P+H FP Q + + ++++ E + P TLF++G+Y IGKE+ AKA G + ++ + LR + +A D A P+T VV RPTGW+
Sbjct: 1 VPNTRFMVDGFRFQSSRCKHYWLSHYHSDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHPALKNQ--RIDMLFLDTTYASPKHVFPCQEDAIADIVRVMKQEAKARPGTLFIMGSYRIGKERAYLGAAKALGWKVHVNADKLRVLRLLGLPENDMALLTRDAAAARIHVSFMGKLLTPDALTDRIRAGPWTHVVAFRPTGWS 267
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: W7THR8_9STRA (Dna cross-link repair 1a protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THR8_9STRA) HSP 1 Score: 199 bits (505), Expect = 3.790e-56 Identity = 100/209 (47.85%), Postives = 132/209 (63.16%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPV--VMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRY 621
MA+Q E+IKW+EG+ F+VDGF F +P+C Y LTHFHSDH GL SF G IYCS T L+V +GV + V LP++ P + G E+TL+DANHCP AVM + + + T LHTGDFRA+E++ + R+ LYLDTTYC ++TFP Q VL +++ E P+T+F VGTYSIGKE+ + AVA G Y
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKS-TILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSY 208
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A4D9CSH8_9STRA (DRMBL domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH8_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.760e-55 Identity = 104/220 (47.27%), Postives = 138/220 (62.73%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPV--VMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLR 654
MA+Q E+IKW+EG+ F+VDGF F +P+C Y LTHFHSDH GL SF G IYCS T L+V +GV + V LP++ P + G E+TL+DANHCP AVM + + + T LHTGDFRA+E++ + R+ +LYLDTTYC ++TFP Q VL +++ E P+T+F VGTYSIGKE+ + AVA G Y D + TLR
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTN-TTILHTGDFRASEALTERTASWLRDRDLRVRTLYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGKVY-ADKHKERTLR 218
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A7S2WP51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP51_9STRA) HSP 1 Score: 187 bits (475), Expect = 4.000e-54 Identity = 100/196 (51.02%), Postives = 118/196 (60.20%), Query Frame = 1
Query: 1 MATQDEKIKWVEG--SPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSL--KGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGK 576
MA Q IK V G S F+VDGF F C+ Y LTH+H DHTTGL+ F G IYCS TA L+V +GV + V LP+ V G + +DA HCP AVMF DP GR LH GDFRA E V +P + + +G LD LYLDTTYC P HTFPDQ VL +VR EL ++ TLF+VGTY IGK
Sbjct: 3 MAAQTSSIKAVRGLSSRFIVDGFNFVEAECKSYFLTHYHGDHTTGLHAGFDLGTIYCSEVTARLVVHDLGVASKLVCVLPLHEWTTVEGVHVMPVDACHCPGAVMFFFDDPT-AGRRVLHCGDFRAEECVVESPHLAAALARGPLDELYLDTTYCRPTHTFPDQPAVLRDVEAIVRHELGQERRTLFVVGTYQIGK 197
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A8J5XFD5_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD5_DIALT) HSP 1 Score: 199 bits (505), Expect = 2.020e-52 Identity = 108/214 (50.47%), Postives = 135/214 (63.08%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSP---FMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSL--KGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDL 627
MA+ E +K + + F+VDGF F P Y LTH+H DHT GL SF AG IYCS TANL++ + V+ +RVVAL +D LV G E+T DANHCP AV R+PR G T LHTGDFRA VC +P + L G +D+L+LDTTYC PR FP Q+ VL L R EL R+P TLFL+G+Y IGKE+ + A+A A GS D+
Sbjct: 1 MASAREALKRLPDAVAPHFIVDGFSFQRPDLTAYFLTHYHGDHTVGLNASFCAGTIYCSQITANLVIAVGLVDAKRVVALALDETSLVDGVEVTPFDANHCPGAVCLHFRNPRTGA-TALHTGDFRAERCVCESPTLARLLAAGPVDTLFLDTTYCAPRWRFPAQAAVLASLRDLARAELAREPLTLFLIGSYEIGKERAVFALASALGSPVDV 213
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A7RZG8_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RZG8_NEMVE) HSP 1 Score: 181 bits (459), Expect = 5.590e-50 Identity = 105/268 (39.18%), Postives = 147/268 (54.85%), Query Frame = 1
Query: 25 KWVEGSPFMVDGFRFTN-PRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYD--------LDTNSPVTLREVLAKARADG-----------------------APFTSVVGVRPTGWTH 732
K + +PF+VD FR+ + P + Y L+HFH DH GL K FS IYCS TANL+ + V++ + ALPMDTPV+V ++TL+DANHCP AV+ + P G+T LHTGDFRA+ + P + + +D+LYLDTTYC P++TFP Q E + A + +P TL + GTY+IGKEKV A+AK G + LD+ ++ V+ +++G FT VV +PTGW H
Sbjct: 6 KKIPDTPFVVDAFRYGSIPGIKVYFLSHFHYDHYGGLKKGFSH-PIYCSKVTANLVESKIKVSQRYIKALPMDTPVIVDKVQVTLLDANHCPGAVLLLFE--LPNGKTILHTGDFRASREMESYPALANKT--IDTLYLDTTYCDPQYTFPKQEETINFAVTKAAQAVSENPKTLIVCGTYTIGKEKVFLAIAKELGCKVTVQSDKKRILDSLESDFIQSVITTDKSEGRIHVLPMGKLNHQHLSSYMDQFKGKFTRVVAFKPTGWEH 268
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: E1ZBA0_CHLVA (Lactamase_B domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBA0_CHLVA) HSP 1 Score: 184 bits (466), Expect = 3.100e-49 Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 1
Query: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGR-LDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPN--TLFLVGTYSIGKEKVLEAVAKATGSR 618
MA+Q E IKWV G+PF+VDGFRF +P CR + LTH HSDHTTGL +SFSAG IYCS TA L+ MG+ + + LP+D P + G E+ IDANHCP AVMF+ R P T LHTGD R + ++ +L GR +D L LDTTY + TFP Q EV+E Q + E P LF+VG+Y IGKE+ A G R
Sbjct: 1 MASQVEAIKWVPGTPFLVDGFRFQHPACRAFFLTHMHSDHTTGLSRSFSAGPIYCSPITARLLRCDMGIRPDLIRILPLDLPTTICGVEVVPIDANHCPGAVMFLFRAPT----TILHTGDVRWQAGMAQHA---ALTGRQVDVLMLDTTYSQRKWTFPPQEEVVELMVQAMAREAAAGPPGAVLFVVGSYHIGKERAYLGAGAALGWR 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9163.20735.1 >prot_Ecto-sp13_S_contig9163.20735.1 ID=prot_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAback to top mRNA from alignment at Ecto-sp13_S_contig9163:3559..6408+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9163.20735.1 ID=mRNA_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:3559..6408+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9163:3559..6408+ >mRNA_Ecto-sp13_S_contig9163.20735.1 ID=mRNA_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:3559..6408+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |