mRNA_Ecto-sp13_S_contig9163.20733.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9163.20733.1
Unique NamemRNA_Ecto-sp13_S_contig9163.20733.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9163.20733.1 vs. uniprot
Match: D8LUD1_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -1 
Query:  616 KKGGRCPFDHAVCHWCLRPGHVALSCENANGFNVP 720
            KKGGRCPFDHAVCHWCLRPGH+ALSCENANGFNVP
Sbjct:  449 KKGGRCPFDHAVCHWCLRPGHIALSCENANGFNVP 483
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9163.20733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUD1_ECTSI1.020e-1697.14C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9163contigEcto-sp13_S_contig9163:322..1041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size722
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.0815132-CDS-Ecto-sp13_S_contig9163:321..7081681464188.0815132-CDS-Ecto-sp13_S_contig9163:321..708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 322..708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.0935793-UTR-Ecto-sp13_S_contig9163:708..10411681464188.0935793-UTR-Ecto-sp13_S_contig9163:708..1041Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9163 709..1041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9163.20733.1prot_Ecto-sp13_S_contig9163.20733.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9163 322..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9163.20733.1

>prot_Ecto-sp13_S_contig9163.20733.1 ID=prot_Ecto-sp13_S_contig9163.20733.1|Name=mRNA_Ecto-sp13_S_contig9163.20733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
LTRDTPTFRLHCCVPEGHDKSALHVDCASKPLNSAERRGSSFVFYRCLHK
DSRTAEEESEELSIRYSDQGEATGEDTWTPPTQCNYRPLPCRTTGVFVLV
LGCNNSVPLRIVARPGRSRDERRHGATP*
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mRNA from alignment at Ecto-sp13_S_contig9163:322..1041+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9163.20733.1 ID=mRNA_Ecto-sp13_S_contig9163.20733.1|Name=mRNA_Ecto-sp13_S_contig9163.20733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:322..1041+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAACCAGAGACACTCCGACATTCCGCCTTCATTGCTGCGTCCCGGAGGG
TCATGACAAAAGCGCCTTACACGTCGATTGTGCGTCTAAGCCTCTGAACA
GCGCGGAAAGACGCGGAAGTTCGTTCGTTTTCTACCGTTGCCTGCACAAA
GACAGCCGTACGGCCGAAGAGGAGTCGGAAGAACTTTCGATACGTTACAG
CGATCAGGGGGAGGCGACGGGCGAAGACACGTGGACGCCCCCAACACAAT
GCAACTACCGACCCCTGCCGTGCCGTACCACCGGTGTCTTCGTCCTGGTT
TTAGGTTGCAACAATAGTGTGCCACTACGAATCGTCGCCCGCCCTGGCCG
GTCTAGAGATGAGAGGCGGCACGGTGCCACTCCATGAGCTGTGCGAGCCC
CTCAATGAACTTGAAAGGCACGGCGCAAAACCCACGAAAAGTACGACGAA
CTTTTACTGGTAGCGTACAACGGGTTTAGCGTCTACCCACCATGTCTCAC
CACTCCCCTTCGTGCTATCCCTTGTTGAGTAGGGTCGATACGGATTTTTC
CATTCCGCATCCTGGACAAAAATACATGATCTTTTCTACTGGTGCTTCCT
TTATGTTTTTTAGCGCGGCACGTTGAATCCATTCGCGTTCTCGCAGCTCA
ACGCAACGTGGCCCGGGCGGAGGCACCAGTGACACACAGCGTGGTCAAAC
GGACACCTCCCACCCTTCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9163:322..1041+

>mRNA_Ecto-sp13_S_contig9163.20733.1 ID=mRNA_Ecto-sp13_S_contig9163.20733.1|Name=mRNA_Ecto-sp13_S_contig9163.20733.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:322..1041+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAACCAGAGACACTCCGACATTCCGCCTTCATTGCTGCGTCCCGGAGGG
TCATGACAAAAGCGCCTTACACGTCGATTGTGCGTCTAAGCCTCTGAACA
GCGCGGAAAGACGCGGAAGTTCGTTCGTTTTCTACCGTTGCCTGCACAAA
GACAGCCGTACGGCCGAAGAGGAGTCGGAAGAACTTTCGATACGTTACAG
CGATCAGGGGGAGGCGACGGGCGAAGACACGTGGACGCCCCCAACACAAT
GCAACTACCGACCCCTGCCGTGCCGTACCACCGGTGTCTTCGTCCTGGTT
TTAGGTTGCAACAATAGTGTGCCACTACGAATCGTCGCCCGCCCTGGCCG
GTCTAGAGATGAGAGGCGGCACGGTGCCACTCCATGA
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