mRNA_Ecto-sp13_S_contig916.20730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig916.20730.1
Unique NamemRNA_Ecto-sp13_S_contig916.20730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5K1D0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.510e-8
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   44 AEGGAPWTGSAQNGRYLREPGRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5KUM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.360e-8
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP + SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   83 AEGGAPWIGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5KE03_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE03_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.390e-8
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   83 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5LCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCX0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.780e-8
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   83 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5KNY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.150e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   83 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5JVY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.180e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:  437 AEGGAPWTGSAKGGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 486
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5JFM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   44 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5L6T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.430e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:  318 AEGGAPWTGSAQDGKYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 367
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5K294_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K294_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.480e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   44 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.550e-7
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  331 VHGGAPEVESARRYQYLREPAREPGPQGRHSGEAAGGFDPREARVAAAHDQ 483
              GGAP   SA+  +YLREP RE GP GRHSGEA GGF P+E RVAAAH+Q
Sbjct:   83 AEGGAPWTGSAQDGRYLREPVRESGPSGRHSGEA-GGFVPQEVRVAAAHNQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig916.20730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K1D0_9PHAE3.510e-866.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUM2_9PHAE5.360e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE03_9PHAE5.390e-866.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LCX0_9PHAE5.780e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY4_9PHAE1.150e-766.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVY3_9PHAE1.180e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFM9_9PHAE1.290e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6T2_9PHAE1.430e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K294_9PHAE1.480e-766.67CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0G8_9PHAE1.550e-766.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig916contigEcto-sp13_S_contig916:9671..10154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size485
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.6452906-CDS-Ecto-sp13_S_contig916:9670..99791681464187.6452906-CDS-Ecto-sp13_S_contig916:9670..9979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig916 9671..9979 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.6563914-UTR-Ecto-sp13_S_contig916:9979..101541681464187.6563914-UTR-Ecto-sp13_S_contig916:9979..10154Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig916 9980..10154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig916.20730.1prot_Ecto-sp13_S_contig916.20730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig916 9671..9979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig916.20730.1

>prot_Ecto-sp13_S_contig916.20730.1 ID=prot_Ecto-sp13_S_contig916.20730.1|Name=mRNA_Ecto-sp13_S_contig916.20730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
SNKKANTRLPLLINGQQKPPLEGVHWKWSVLVGDLVKTEIVSDTSGDPAV
GLTRGNKPESGPNIVAVGAGQPADDAGDKSGIITRDAGVWQCQGGCCWTR
RA*
back to top

mRNA from alignment at Ecto-sp13_S_contig916:9671..10154+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig916.20730.1 ID=mRNA_Ecto-sp13_S_contig916.20730.1|Name=mRNA_Ecto-sp13_S_contig916.20730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig916:9671..10154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTAATAAGAAAGCCAATACGAGGCTTCCCCTCCTTATTAATGGACAACA
AAAACCACCCCTCGAGGGAGTCCATTGGAAATGGTCCGTCCTCGTTGGCG
ACCTCGTAAAGACGGAGATAGTGAGTGACACCTCCGGCGATCCCGCGGTG
GGACTCACAAGAGGTAACAAGCCTGAAAGTGGGCCAAATATTGTAGCTGT
CGGAGCAGGTCAGCCAGCTGACGATGCCGGTGACAAGTCTGGCATCATCA
CGCGAGATGCAGGGGTCTGGCAGTGCCAAGGAGGGTGCTGCTGGACGCGG
AGAGCGTAGCCGGGTCGCCTGCGGTTCGTTGTTCATGGAGGGGCACCGGA
GGTCGAGAGCGCGCGCAGATACCAATACCTGCGCGAACCGGCTCGAGAGC
CCGGCCCGCAAGGGCGACACAGCGGCGAAGCGGCGGGGGGTTTCGACCCC
CGAGAGGCGAGAGTAGCTGCTGCTCACGACCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig916:9671..10154+

>mRNA_Ecto-sp13_S_contig916.20730.1 ID=mRNA_Ecto-sp13_S_contig916.20730.1|Name=mRNA_Ecto-sp13_S_contig916.20730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig916:9671..10154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTAATAAGAAAGCCAATACGAGGCTTCCCCTCCTTATTAATGGACAACA
AAAACCACCCCTCGAGGGAGTCCATTGGAAATGGTCCGTCCTCGTTGGCG
ACCTCGTAAAGACGGAGATAGTGAGTGACACCTCCGGCGATCCCGCGGTG
GGACTCACAAGAGGTAACAAGCCTGAAAGTGGGCCAAATATTGTAGCTGT
CGGAGCAGGTCAGCCAGCTGACGATGCCGGTGACAAGTCTGGCATCATCA
CGCGAGATGCAGGGGTCTGGCAGTGCCAAGGAGGGTGCTGCTGGACGCGG
AGAGCGTAG
back to top