mRNA_Ecto-sp13_S_contig9158.20727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 1.990e-155 Identity = 343/438 (78.31%), Postives = 351/438 (80.14%), Query Frame = 2
Query: 23 PTDVQRPIFFATAAGSLARRLLGHSYHNRTHVADGRGGQDCCCCGGSRMSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAGGSRKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGQGNEKAEFCGKHANDHILGAGIFGEYGDAGAXXXXXXXXXXXXKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRSSPSERYLMEGVNSSSQQQQXQ------LHFQPHQQPIQQPHGRYINNIGGGGGVIQQFRPQQLSPHDRYGAAGLMPVGAESAAYSEEIAAVFEREMPL 1318
PT+VQRPIFF ARRLLGHSYH+RT VA RG GGSRMSQCGH NCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE KIPGAXXXXXXXXXXXXXXXXXXXXXXXXXX SGQGNEKAEFCGKHAND IL AGIFGEYGDAGAXXXXX KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPA PNDTRYVKNESLEFRPLSAPSNDR+LGAAESLAHFRSSPSER LMEGVNSSSQQQ X LHFQPHQQPIQ PHGRYINN+ GGGG +QQF PQQLSP+DRYGAAGLMPV AES AYSEE+AAVF+REM L
Sbjct: 19 PTNVQRPIFFP------ARRLLGHSYHHRTRVAHRRGXXXXXXXGGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEVSRGSKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXSYISGQGNEKAEFCGKHANDQILSAGIFGEYGDAGAXXXXXEAGA---KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAAAASVPPPFMMTPRPAFSGAPQQQQQ---------PNDTRYVKNESLEFRPLSAPSNDRHLGAAESLAHFRSSPSERCLMEGVNSSSQQQXXXXXXXXXLHFQPHQQPIQHPHGRYINNLRGGGGEMQQFWPQQLSPNDRYGAAGLMPVRAESVAYSEEVAAVFDREMSL 438
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI) HSP 1 Score: 315 bits (806), Expect = 8.990e-101 Identity = 305/384 (79.43%), Postives = 313/384 (81.51%), Query Frame = 2
Query: 167 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAGGSRKIPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSGQGNEKAEFCGKHANDHILGAGIFGEYGDAGAXXXXXXXXXXXXKRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRSSPSERYLMEGVNSSSQQQQXQLHFQPHQQPIQQPHGRYINNIGGGGGVIQQFRPQQLSPHDRYGAAGLMPVGAESAAYSEEIAAVFEREMPL 1318
MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S KIPGA XXXXXXXXXXXXXXXXXXXXXXXXXXX ND IL AG+FGEYGDAGA XXXXXXXX KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLP XXXXXXXXXXXXXXXXXXXXXXXXXXXX PNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFR+SPSERY+ NN+GGGGG +QQFRPQQLSP+DRYGAAGLMPVGAES+AYSEEIAAVF+REMPL
Sbjct: 1 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-KIPGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEILAAGMFGEYGDAGATPAXXXXXXXX-KRKQPPPIAPYELGMGRMVPPGLSAGMAARSDIPNKRTAVLPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PNDTRYVKNESLEFRPLSAPSNDRYLGAAESLAHFRASPSERYM--------------------------------NNLGGGGGEMQQFRPQQLSPNDRYGAAGLMPVGAESSAYSEEIAAVFDREMPL 344
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 1.530e-6 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 167 MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 286
M CGHA C K+P YGVAG+KKREFCS H + GMV+V N+
Sbjct: 1 MPACGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVVNR 40
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D7FWU8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU8_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 3.990e-6 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 2
Query: 155 GGSRMS-QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
GG + S +C H C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 48 GGMQSSGKCLHPGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 94
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 5.560e-6 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 2
Query: 176 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
C CT RP+YG+ GSKK EFCS+H++ GM NV KRC
Sbjct: 31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 1.140e-5 Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 2
Query: 176 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
C CTK P+YG AGSKK EFC+QHA+ GMVN+ ++RC
Sbjct: 109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 3.170e-5 Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 2
Query: 176 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
C CT RP+YG+ G KK EFCS+H++ GM+N+ KRC
Sbjct: 27 CQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: A0A6H5KFP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP4_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 3.580e-5 Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 173 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
+C ++ C+KRPTYGV S+KRE CSQHAR MVN++ RC
Sbjct: 6 KCLYSGCSKRPTYGVEASRKRECCSQHARPWMVNIDLTRC 45
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 4.000e-5 Identity = 25/45 (55.56%), Postives = 29/45 (64.44%), Query Frame = 2
Query: 158 GSRMSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 292
G C C+ RP+YG SKK EFCSQHA+ GMVNV +KRC
Sbjct: 242 GRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRC 286
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Match: D8LCI2_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCI2_ECTSI) HSP 1 Score: 55.5 bits (132), Expect = 5.820e-5 Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 2
Query: 173 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 289
+CGH C K +YGV G+K+REFC +HA+ GMV+V +KR
Sbjct: 5 RCGHPGCGKHSSYGVKGTKEREFCGRHAKMGMVDVRSKR 43 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9158.20727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9158.20727.1 >prot_Ecto-sp13_S_contig9158.20727.1 ID=prot_Ecto-sp13_S_contig9158.20727.1|Name=mRNA_Ecto-sp13_S_contig9158.20727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=385bp MSQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRCIQPNCTTIback to top mRNA from alignment at Ecto-sp13_S_contig9158:1725..5960+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9158.20727.1 ID=mRNA_Ecto-sp13_S_contig9158.20727.1|Name=mRNA_Ecto-sp13_S_contig9158.20727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9158:1725..5960+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9158:1725..5960+ >mRNA_Ecto-sp13_S_contig9158.20727.1 ID=mRNA_Ecto-sp13_S_contig9158.20727.1|Name=mRNA_Ecto-sp13_S_contig9158.20727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9158:1725..5960+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |