mRNA_Ecto-sp13_S_contig9156.20726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9156.20726.1
Unique NamemRNA_Ecto-sp13_S_contig9156.20726.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9156.20726.1 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 4.970e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query:  192 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTS 290
            SGVTPLHRAAEVNSCQVAQVLINADASVNVRTS
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTS 41
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BLAST of mRNA_Ecto-sp13_S_contig9156.20726.1 vs. uniprot
Match: UPI0006234918 (ankyrin repeat domain-containing protein 39 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006234918)

HSP 1 Score: 54.7 bits (130), Expect = 2.140e-5
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 3 
Query:  108 IWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQVLINADASVNVRT 287
            IW AA   +V R+K LL +G+SPDAT  +G  PLH AA      V ++L+   A VN  T
Sbjct:   37 IWGAAMDGDVERIKLLLSKGISPDATDSAGYKPLHYAARNGHYLVCEILLQHGADVNATT 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9156.20726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B2_ECTSI4.970e-11100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00062349182.140e-545.00ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9156contigEcto-sp13_S_contig9156:3267..5640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog157072.XP_008867204.1
Model size725
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
Cds size600
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9156.20726.1prot_Ecto-sp13_S_contig9156.20726.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9156 3294..5542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.3057182-UTR-Ecto-sp13_S_contig9156:3266..32931681464187.3057182-UTR-Ecto-sp13_S_contig9156:3266..3293Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9156 3267..3293 -
1681464187.377237-UTR-Ecto-sp13_S_contig9156:5542..56401681464187.377237-UTR-Ecto-sp13_S_contig9156:5542..5640Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9156 5543..5640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.31905-CDS-Ecto-sp13_S_contig9156:3293..35301681464187.31905-CDS-Ecto-sp13_S_contig9156:3293..3530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 3294..3530 -
1681464187.3307552-CDS-Ecto-sp13_S_contig9156:3681..38141681464187.3307552-CDS-Ecto-sp13_S_contig9156:3681..3814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 3682..3814 -
1681464187.3487694-CDS-Ecto-sp13_S_contig9156:4413..45501681464187.3487694-CDS-Ecto-sp13_S_contig9156:4413..4550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 4414..4550 -
1681464187.3661215-CDS-Ecto-sp13_S_contig9156:5449..55421681464187.3661215-CDS-Ecto-sp13_S_contig9156:5449..5542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 5450..5542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9156.20726.1

>prot_Ecto-sp13_S_contig9156.20726.1 ID=prot_Ecto-sp13_S_contig9156.20726.1|Name=mRNA_Ecto-sp13_S_contig9156.20726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MGDIWQAARANNVPRVKALLERGVSPDATRWSGVTPLHRAAEVNSCQVAQ
VLINADASVNVRTSWGWYAPLHFALNSGHEQVAEVLLRAGARWTILTKRL
QTPYDLAVARGLKIQALKIQDISRKISEERRILHKSAPTDASTSRGRRAT
EATAARRKQAKEHQVNMQRLQVTPEGKDGEWHGKSEAERSNKQEQENHN*
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mRNA from alignment at Ecto-sp13_S_contig9156:3267..5640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9156.20726.1 ID=mRNA_Ecto-sp13_S_contig9156.20726.1|Name=mRNA_Ecto-sp13_S_contig9156.20726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9156:3267..5640- (Ectocarpus species13 EcNAP12_S_4_19m)
TAATTGTTCAACAGCTGTGTGGTATTACTGGAGGTTTAGCAGATGATCCC
CCCGTCCTACGCTCTTCTGTCGAACAAGGCCGGCAACTCAACAATCCAAT
GGGAGACATCTGGCAGGCAGCGCGCGCGAACAACGTGCCGAGGGTGAAAG
CTTTATTGGAGAGGGGGGTCAGTCCTGACGCCACGCGCTGGGTGAGAGTA
GAACTTCTGAGCTTTTTCCCTCGGCAGAACGCAGGCGTACCACCGCTGTC
TGTAGATTATTGCAACTACGATGTACGTAGTCTACATCTGTACAATCGTT
TAGACTGTTCTTGTACTGCTGTCTACAGTATATCTTTACGGGGGTCACTT
CGTTCATGTGTACTCTACAGTACAAGTAGTAAATAGCAAGTATATCTACT
TAGGGTTTACTGTATACACATTTTACTACTTGTGCTTTAGGAAGTAGTTC
GTATACACAGCCACAGAAACGAGATAGTTCCACAGCAATCGAAGGAAATA
TGTGTTGAAGTCCTTCATCACTGGTCCACGCGACTACGTCGCCCATAGGT
CATGCACGCTCTCCGTGAATCCAAAACCAATCATACTGGCAGGCTACTAC
GTACAAACGTTATTTGTCGACAGGAAGTCTATGGGTTCAACATTCACCTG
CACAAGGGCACGGTTGTCAACGGCGGGGGAGTTCTTTGGCTATCGATACT
TTTAGGCCCGTTCGCGATTTGTCATTCTCTTTCCTCCGGGTGCACTGAAC
AACTGTAAAATAAGAACGGGGGATCCATCTCCCACAATTCCTTCCTGACG
CCGAGTTGCTGCAAAACCGTTTCTTTTCTGTTTTCAGGGAGTCAACCATG
CGAACACAGCGTCGTCATACTTACGTGTAGATGATACCTTGGCGAGTCTC
CCTCGTCCGAAGGGAGAGAGTGTGTATGTTCCTGCTGTGCCTGAACGGTT
GGTGGTGCTTACCCATCTACACGGAAAAGTAACACGTCAGTCTACCCACA
GCGCACCTTCTCCAAACTATTTACGGTCTTGCAAACATGGGTCCTCTGTT
TGTTCTGTGGTGCACTTTGGGGGGTCGGAGCGCGCTTCAGAGTGGAGTTA
CACCTCTTCACCGAGCGGCCGAGGTCAATAGCTGTCAGGTGGCTCAGGTT
CTTATCAACGCGGACGCCAGCGTGAACGTGAGGACATCATGGGGCTGGTA
TGCCCCCCTGCACTTTGCCCTTAACAGGCGAGTGAACAAGGACATACGCT
CCATTCGTACGCGCCCACGCGTAGAATTGTAACTAATCTGTCAAATTCGA
ACGATGTTGCAAGAGTGATGTAGGATATTGAGCGATGGTCGGCGGTGTTG
GCAAGCCTGCTCTACTTCTGTTTCCTTCCACACACAGCACGCCAGGGTGC
TCAACGCCACAAGCGTTCTCGGTTTGAAGAGCTGAAGCGGGTCACGGAAC
TGGAGAGAGGTGCTCGCTTTTTTTGCAGGGACCACGTCATGTTTAGACGC
TATCCAAGGTTATGTGGCGCTCACGTCGCACGTGTCAATGCCGTACCATA
CACAACCACAGGTCAATCGACGCGCTATTCGCAGTACCCCGACTGTGCAG
ATGCTGTGCAGTCGTGCCGCACGCTGAAACCAAACTGCCAATTGTGATAA
TATCGAAAGACCTTGTACCAGTATAACAACGCGCCGATGTTTAGTGTTTN
NNNNNNNNNNNNNNNNNNNNNNNNACAACGCGCCGATGTTTAGTGCAATG
AAGACGTCGGGTTTATTGTGCGAGGCAAAATATGTCCTCATTCAGTATCG
TCTGGTTAAAATGTTTTCTCGAACAGCGGGCACGAGCAAGTTGCCGAGGT
GCTTCTGCGGGCTGGCGCGAGGTGGACCATCCTTACGAAACGACTGCAGA
CGCCGTACGACCTGGCGGTCGCCCGCGGGTTGAAGATCCAGGCGCTGAAA
ATACAGGATGTGAGAAACAACGAGCTCGGAGAACCGTATCCCGCCCAACG
GTAACCGGAGGGTTCACCAACAACCCACTCGGTACACTTCACCCTTCCAC
GTCGCACTGCCACGCCGCGTACTGACCATCTGAAAACGACCGGACGATGA
CAACAAGCAGATCTCACGCAAGATTTCAGAAGAGAGGCGCATCTTGCACA
AGTCGGCCCCGACAGATGCCAGCACCAGCAGGGGCAGGAGAGCCACCGAG
GCGACGGCGGCTAGGCGCAAACAGGCGAAGGAACATCAAGTGAACATGCA
GCGGCTGCAAGTGACTCCAGAGGGCAAAGACGGAGAGTGGCACGGGAAAT
CGGAAGCTGAACGCTCGAACAAGCAAGAGCAAGAAAACCACAACTAACTC
CTGTCGAGCCATCGACAACAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9156:3267..5640-

>mRNA_Ecto-sp13_S_contig9156.20726.1 ID=mRNA_Ecto-sp13_S_contig9156.20726.1|Name=mRNA_Ecto-sp13_S_contig9156.20726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9156:3267..5640- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGACATCTGGCAGGCAGCGCGCGCGAACAACGTGCCGAGGGTGAA
AGCTTTATTGGAGAGGGGGGTCAGTCCTGACGCCACGCGCTGGAGTGGAG
TTACACCTCTTCACCGAGCGGCCGAGGTCAATAGCTGTCAGGTGGCTCAG
GTTCTTATCAACGCGGACGCCAGCGTGAACGTGAGGACATCATGGGGCTG
GTATGCCCCCCTGCACTTTGCCCTTAACAGCGGGCACGAGCAAGTTGCCG
AGGTGCTTCTGCGGGCTGGCGCGAGGTGGACCATCCTTACGAAACGACTG
CAGACGCCGTACGACCTGGCGGTCGCCCGCGGGTTGAAGATCCAGGCGCT
GAAAATACAGGATATCTCACGCAAGATTTCAGAAGAGAGGCGCATCTTGC
ACAAGTCGGCCCCGACAGATGCCAGCACCAGCAGGGGCAGGAGAGCCACC
GAGGCGACGGCGGCTAGGCGCAAACAGGCGAAGGAACATCAAGTGAACAT
GCAGCGGCTGCAAGTGACTCCAGAGGGCAAAGACGGAGAGTGGCACGGGA
AATCGGAAGCTGAACGCTCGAACAAGCAAGAGCAAGAAAACCACAACTAA
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