mRNA_Ecto-sp13_S_contig9156.20725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9156.20725.1
Unique NamemRNA_Ecto-sp13_S_contig9156.20725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: D7G4B1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4B1_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.120e-52
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I +   S+VPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY
Sbjct:   58 IYVVDVSEVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 142
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A835Z237_9STRA (Mitosis protein DIM1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z237_9STRA)

HSP 1 Score: 167 bits (423), Expect = 9.230e-52
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I +   SQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+EVVYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:   58 IYVVDISQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIEVVYRGARKGRGLVVSPKDYSTKYRY 142
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A7S2F826_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F826_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.540e-49
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   19 SQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            S+VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNN QEMIDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:   33 SEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNSQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 111
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A7S2HED9_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2HED9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.470e-49
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I +   S+VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFN+KQEMIDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:   59 IYVIDISEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNSKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY 143
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A7S3HQX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQX3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.650e-49
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I L   S+VPDF  MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:   71 IYLVDLSEVPDFTTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 155
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A2P6VKX7_9CHLO (Thioredoxin 4A n=2 Tax=Trebouxiophyceae TaxID=75966 RepID=A0A2P6VKX7_9CHLO)

HSP 1 Score: 157 bits (397), Expect = 1.730e-48
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I L   S+VPDFN MYELYDPCT+MFFFRNKHIMIDLGTGNNNKI+WA N+KQE +DI+EVVYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:    7 IYLVDISEVPDFNAMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWAMNDKQEFVDIVEVVYRGARKGRGLVVSPKDYSTKYRY 91
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: T1JZI3_TETUR (Uncharacterized protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=T1JZI3_TETUR)

HSP 1 Score: 157 bits (397), Expect = 2.580e-48
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I L   ++VPDFN MYELYDPCTVMFFFRNKHIMIDLGTGNNNKI+WA +NKQEMIDI+E VYRGARKGRGLV+SPKDYSTKY+Y
Sbjct:   20 IYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALDNKQEMIDIIETVYRGARKGRGLVISPKDYSTKYRY 104
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A812WHX6_SYMMI (YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812WHX6_SYMMI)

HSP 1 Score: 158 bits (400), Expect = 2.940e-48
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:   19 SQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            ++VPDFN MYELYDPCTVMFF+RNKHIMIDLGTGNNNKI+WAFNNKQEMIDI+EVV+RGARKGRGLV+SPKDYSTKY+Y
Sbjct:   64 TEVPDFNTMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWAFNNKQEMIDIIEVVFRGARKGRGLVISPKDYSTKYRY 142
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A2V0P5X6_9CHLO (Thioredoxin n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5X6_9CHLO)

HSP 1 Score: 158 bits (400), Expect = 2.940e-48
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    7 LCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            L   SQVPDFN MYELYDPCT+MFFFRNKHIMIDLGTGNNNKI+WA NNKQE IDI+E VYRGARKGRGLVVSPKDYSTKY+Y
Sbjct:   60 LVDISQVPDFNTMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWAMNNKQEFIDIVETVYRGARKGRGLVVSPKDYSTKYRY 142
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BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Match: A0A482V1I6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I6_9ARCH)

HSP 1 Score: 158 bits (399), Expect = 4.180e-48
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:    1 IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFNNKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY 255
            I L   S+VPDFN MYELYDPCTVMFFFRNKHIM+D+GTGNNNKI+WA NNKQE+IDI+E VYRGA+KGRGLV+SPKDYSTKYKY
Sbjct:   58 IYLVDISEVPDFNTMYELYDPCTVMFFFRNKHIMVDMGTGNNNKINWALNNKQELIDIIETVYRGAKKGRGLVISPKDYSTKYKY 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9156.20725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B1_ECTSI1.120e-5292.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z237_9STRA9.230e-5290.59Mitosis protein DIM1-domain-containing protein n=1... [more]
A0A7S2F826_9STRA5.540e-4991.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HED9_9STRA7.470e-4985.88Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A7S3HQX3_9STRA7.650e-4985.88Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2P6VKX7_9CHLO1.730e-4883.53Thioredoxin 4A n=2 Tax=Trebouxiophyceae TaxID=7596... [more]
T1JZI3_TETUR2.580e-4883.53Uncharacterized protein n=2 Tax=Tetranychus urtica... [more]
A0A812WHX6_SYMMI2.940e-4888.61YLS8 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A2V0P5X6_9CHLO2.940e-4886.75Thioredoxin n=1 Tax=Raphidocelis subcapitata TaxID... [more]
A0A482V1I6_9ARCH4.180e-4882.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9156contigEcto-sp13_S_contig9156:1131..1835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score171.4
Seed ortholog evalue1.8e-40
Seed eggNOG ortholog2880.D7G4B1
Preferred nameDIM1
Model size258
KEGG koko:K12859
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005681,GO:0005682,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
Exons2
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG3414@1,KOG3414@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-02_002020.1
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.267222-CDS-Ecto-sp13_S_contig9156:1130..12921681464187.267222-CDS-Ecto-sp13_S_contig9156:1130..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 1131..1292 +
1681464187.2793534-CDS-Ecto-sp13_S_contig9156:1739..18351681464187.2793534-CDS-Ecto-sp13_S_contig9156:1739..1835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9156 1740..1835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9156.20725.1prot_Ecto-sp13_S_contig9156.20725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9156 1131..1835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9156.20725.1

>prot_Ecto-sp13_S_contig9156.20725.1 ID=prot_Ecto-sp13_S_contig9156.20725.1|Name=mRNA_Ecto-sp13_S_contig9156.20725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
IRLCPFSQVPDFNDMYELYDPCTVMFFFRNKHIMIDLGTGNNNKISWAFN
NKQEMIDIMEVVYRGARKGRGLVVSPKDYSTKYKY*
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mRNA from alignment at Ecto-sp13_S_contig9156:1131..1835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9156.20725.1 ID=mRNA_Ecto-sp13_S_contig9156.20725.1|Name=mRNA_Ecto-sp13_S_contig9156.20725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9156:1131..1835+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCGCCTTTGTCCCTTTTCGCAGGTGCCGGACTTCAACGACATGTACGA
GCTCTACGACCCTTGCACCGTGATGTTCTTCTTCCGCAACAAGCACATCA
TGATCGATCTCGGCACGGGAAACAACAACAAGATCTCGTGGGCGTTCAAC
AACAAGCAGGAGGTGCGCTCAATTGTCCATCTGCAGCCGCGTTTGCTGAG
GGTTTATGCGATTGTTTGTAAGAGTAGCGCGCCCACCACCACTTTGCTTG
GGCTCGTCAAACAGCGGTGGAAAGAGCTGGTGTGATGTTCTTTTCGATGG
TGTTAAAGGCCCTGTGGTCGACCTGAGCGGCCACGAGGAACAATGACAGG
CCTCCGGCCTTCAACACCACGCAGAATGTACAGTGTAGGGCTGGCGGGCA
TAGCCGCGGGAGCCTTGGACGGAGATACCTATTCGCACGCAGGCGTGCTT
GATCGCCACGTTTTTTGCTGTTGATTGTCGCGTTCGTTTTTGCTTGGAAA
TGCGACGAGATGTCATCATTCGCGTGTGCGGGCGAAGCTTGATTTGAACG
TTACTTGCCCTAACACCCCCGCCAAACGCCCTCTCTCCCTCCCTCCCTCA
TCCTGCCAGATGATCGACATTATGGAGGTCGTGTACAGGGGAGCTCGAAA
GGGCAGAGGTCTGGTCGTCTCACCGAAGGACTACTCGACGAAGTACAAAT
ACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9156:1131..1835+

>mRNA_Ecto-sp13_S_contig9156.20725.1 ID=mRNA_Ecto-sp13_S_contig9156.20725.1|Name=mRNA_Ecto-sp13_S_contig9156.20725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9156:1131..1835+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCGCCTTTGTCCCTTTTCGCAGGTGCCGGACTTCAACGACATGTACGA
GCTCTACGACCCTTGCACCGTGATGTTCTTCTTCCGCAACAAGCACATCA
TGATCGATCTCGGCACGGGAAACAACAACAAGATCTCGTGGGCGTTCAAC
AACAAGCAGGAGATGATCGACATTATGGAGGTCGTGTACAGGGGAGCTCG
AAAGGGCAGAGGTCTGGTCGTCTCACCGAAGGACTACTCGACGAAGTACA
AATACTGA
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