mRNA_Ecto-sp13_S_contig9154.20724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9154.20724.1 vs. uniprot
Match: A0A6H5KA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA60_9PHAE) HSP 1 Score: 643 bits (1659), Expect = 4.710e-222 Identity = 461/686 (67.20%), Postives = 481/686 (70.12%), Query Frame = 1
Query: 1 QACLEDYLFQRITVGHHSLHPCPKF-----GEESCRSSATRNDVRRIVRAEVYEEHRIRLEGLSGACEEXXXXXXXXXXXXXXHVSSPPSPLLSSLSRRASGAAADSHEEDADAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GRTPGGGAGRKGRKRFAWSPRWSPHRR-PPSLDGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKRATGAGAGGEE--TEGAASAAGTYAAGLRHLTCPTCGAHRCQRPRGGGVKVPIDPNDEAMTKATMPISTDAAASETATVRRRRGSRMTDNLVPCLGCGEAWCLLCGDPVSTAKIAADVVSSGGVGGGS--------YRRTRTDPKEGRGRDGQGEKERGIWYAMPTGGVVPCGHVRHFNRWNVAGCPGARFTGPK-----------GWDGEFITLYRALVAILVFLVGPLFFLLRGVCLLVETLLAPLCCGAFGGASRSVPGIICFPLAVTLSAVLMAAWLPLGLVAAATRWLWTAAAFGRPQADEDGDSTFGGGQLDSDVPALKQPENFPASRKKRQTTKGAKACRTLAFAPAVMLSSYLASWWREGGDGGRGRGGGSHDDGGVDDINNSYSDDGRSEKQWQNEDLPDGGCEKARELLVVAAEEGAGKGELETPPLSVSPA 1968
+ACLEDYLFQRI VGHHSLHPCPK G S S D R V+ ++ +GLSGACEE XXXXXXXXXXX LLSSLS+RAS AAADSHEED DAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXXX GR PGGG GR GRK FAWSP WSPHRR PSLDGT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEGAASAAGT AAGLRH TCP CGA RCQR RG GVKVP+DPNDEAM RGS MTDNLVPCLGCGEAWCLLCGDPVSTA+IAADVVSSGGV G YRRTRTDPKEGRGRDGQGE ERG YA+ TGGVVP GHVRHF+RWNVAGCPGAR+T PK GW+GEFITLYRALV +LVFLVGPLFFLLRGVCLLVETLLA LCC AFGGASR +ADEDGDS GGGQ DSDVPAL+QPE P S KKRQ T+GAKACR LAFAPAVMLSSYLASW REGGDGGRGRG GS DDGG D++NNS DD RS QW+NEDLPDG E+ARELLVVAAEEGAGKGELETPPLSVSPA
Sbjct: 40 KACLEDYLFQRIMVGHHSLHPCPKVDSADQGTTSFASDVICGDPGRSVK---HQRPDTLQQGLSGACEECGHXXXXXXXXXXXXXXXXXXXLLSSLSQRASAAAADSHEEDTDAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXXXSVPRDAAAAMAAGRAPGGGDGRTGRKGFAWSPMWSPHRRGTPSLDGTATGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGAASAAGTPAAGLRHRTCPACGARRCQRTRGSGVKVPVDPNDEAMATXXXXXXXXXXXXXXXXXXXXRGSNMTDNLVPCLGCGEAWCLLCGDPVSTAEIAADVVSSGGVDGDGGVGGIGCGYRRTRTDPKEGRGRDGQGESERGTGYAVSTGGVVPRGHVRHFSRWNVAGCPGARYTDPKVGEVVSCVTARGWEGEFITLYRALVVVLVFLVGPLFFLLRGVCLLVETLLASLCCSAFGGASRF-------------------------------------------KADEDGDSGGGGGQFDSDVPALRQPEKIPTSMKKRQATEGAKACRILAFAPAVMLSSYLASWLREGGDGGRGRGVGSQDDGGTDNVNNSCPDDKRSIMQWKNEDLPDGISEQARELLVVAAEEGAGKGELETPPLSVSPA 679
BLAST of mRNA_Ecto-sp13_S_contig9154.20724.1 vs. uniprot
Match: D7FWK9_ECTSI (IBR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK9_ECTSI) HSP 1 Score: 567 bits (1461), Expect = 1.710e-193 Identity = 382/488 (78.28%), Postives = 394/488 (80.74%), Query Frame = 1
Query: 1 QACLEDYLFQRITVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRIRLEGLSGACEEXXXXXXXXXXXXXXHVSSPPSPLLSSLSRRASGAAADSHEEDADAGAKEDNTCQSCGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--RT-PGGGAGRKGRKRFAWSPRWSPHRRPPSLDGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKRATGAG--AGGEETEGAASAAGTYAAGLRHLTCPTCGAHRCQRPRGGGVKVPIDPNDEAMTKATMPISTDAAASETATVRRRRGSRMTDNLVPCLGCGEAWCLLCGDPVSTAKIAADVVSSGGVGGGS-----YRRTRTDPKEGRGRDGQGEKERGIWYAMPTGGVVPCGHVRHFNRWNVAGCPGARFTGPKGWDGEFITLYRALVAILVFLVGPLFFLLRGVCLLVETLLAPLCCGAFGGASRSVPGII 1434
+ACLEDYLFQRI VGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHR RLEGLSGAC XXXXXXXXXXXXXX LLS++SRRAS A ADSHEEDA AGA EDNTCQSCGST XXXXXXXXXXXX G RT PGGGAGRKGRK FAWSPRWSPH R PSLD T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DEK ATGAG AG +E EGAASAAGT+AAGLRH TCPTCGAHR Q PRG VK P+DPNDE MT ATMP ST AAASETAT RRRRGS MTDNLV CLGCGEAWCLLCG PVSTA+ AAD VSSGG YRRTRTDPKEGRG DGQGE+ERG YA+ TGGVVP GHVRHF+RWNVAGCPGAR+T P GW GEFITLYRALVAILVFLVGPLFF LRGVCLLVETLLAPLCCGAFGGASR +I
Sbjct: 85 KACLEDYLFQRIMVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEHRRRLEGLSGACXXXXXXXXXXXXXXXXXXXXXXXXLLSAISRRASAAXADSHEEDAGAGANEDNTCQSCGSTXXXXXXXXXXXXXSHRQKRHPVPRDAATAGAARTAPGGGAGRKGRKGFAWSPRWSPHGRAPSLDRTATGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPPEVDEKSATGAGVGAGDKEAEGAASAAGTHAAGLRHRTCPTCGAHRRQSPRGSRVKAPVDPNDEEMTTATMPTSTPAAASETATARRRRGSDMTDNLVLCLGCGEAWCLLCGGPVSTAETAADGVSSGGXXXXXXXXXXYRRTRTDPKEGRGCDGQGERERGTGYAVSTGGVVPRGHVRHFSRWNVAGCPGARYTDPMGWKGEFITLYRALVAILVFLVGPLFFFLRGVCLLVETLLAPLCCGAFGGASRPTKMVI 572 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9154.20724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9154.20724.1 >prot_Ecto-sp13_S_contig9154.20724.1 ID=prot_Ecto-sp13_S_contig9154.20724.1|Name=mRNA_Ecto-sp13_S_contig9154.20724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=659bp QACLEDYLFQRITVGHHSLHPCPKFGEESCRSSATRNDVRRIVRAEVYEEback to top mRNA from alignment at Ecto-sp13_S_contig9154:297..3534+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9154.20724.1 ID=mRNA_Ecto-sp13_S_contig9154.20724.1|Name=mRNA_Ecto-sp13_S_contig9154.20724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3238bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9154:297..3534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9154:297..3534+ >mRNA_Ecto-sp13_S_contig9154.20724.1 ID=mRNA_Ecto-sp13_S_contig9154.20724.1|Name=mRNA_Ecto-sp13_S_contig9154.20724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1977bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9154:297..3534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |