mRNA_Ecto-sp13_S_contig9151.20723.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9151.20723.1
Unique NamemRNA_Ecto-sp13_S_contig9151.20723.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A6H5KFL7_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL7_9PHAE)

HSP 1 Score: 639 bits (1648), Expect = 1.390e-220
Identity = 374/425 (88.00%), Postives = 381/425 (89.65%), Query Frame = 1
Query:  310 QTPNASQGAWGVPGRSAADLLRSANASAAPTLASQGQSXXXXXXXXXXXXXX-----AADLAVVPLSAESIGALVGMGIDQAWAAAALRRCGGNDVSRAVEYCFSHDMGALAEEDARAFEAATNADASQQXXXXXXXXXXXXXXXXXXXXXXXLDQEERRLFEARRSTAAATLATEQGTFGSKVRVAASAAPAPPEGTGTGPSAGGASQNPPQRWGVADAEGFLDDGGEDLVSKDTELREDGDEGHMLEEXXXXXXFRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            QTPNASQGAWGVPGRSAADLLRSANASAA         XXXXXXXXXXXXXX     A DLAVVPLSAESIGALVGMGIDQAWAAAALRRCGGNDV RAVEYCFSHDMGALAEEDARAFEAAT AD  QQ         XXXXXXXXXXX   LDQEERR+FEARRSTAAATLATEQGTFGSKVRVAA+ APA P GTGTGPS GG SQNPPQRWGVADAEGF+DDGG+DL+S+DTELREDGD+G  LEE      FRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR
Sbjct:   80 QTPNASQGAWGVPGRSAADLLRSANASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDLAVVPLSAESIGALVGMGIDQAWAAAALRRCGGNDVGRAVEYCFSHDMGALAEEDARAFEAATAADVFQQQRQDNETQHXXXXXXXXXXXALALDQEERRMFEARRSTAAATLATEQGTFGSKVRVAAATAPAAPGGTGTGPSGGGGSQNPPQRWGVADAEGFMDDGGKDLLSQDTELREDGDKGDGLEEGEGGGGFRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 504          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: D7FKT4_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT4_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 2.760e-135
Identity = 284/342 (83.04%), Postives = 288/342 (84.21%), Query Frame = 1
Query:  310 QTPNASQGAWGVPGRSAADLLRSANASAAPTLASQGQSXXXXXXXXXXXXXXA------ADLAVVPLSAESIGALVGMGIDQAWAAAALRRCGGNDVSRAVEYCFSHDMGALAEEDARAFEAATNADASQQXXXXXXXXXXXXXXXXXXXXXXXLDQEERRLFEARRSTAAATLATEQGTFGSKVRVAASAAPAPPEGTGTGPSAGGASQNPPQRWGVADAEGFLDDGGEDLVSKDTELREDGDEGHMLEEXXXXXXFRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQ 1317
            QTPNASQGAWGVPGRSAADLLRSANASAA         XXXXXXXXXXXXXX       ADLAVVPL AESIGALVGMGIDQAWAAAALRRCGGNDVSRAVEYCFSHDMGALAEEDARAFEAAT ADASQ XXXXXXXXXXXXXXXXXXXXXXXLDQEERRLFEARRSTAAATLATEQGTFGSK                          +PPQRWGVADAE  +D GGEDL+S+DTELREDGDEG     XXXXXX RAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQ
Sbjct:  216 QTPNASQGAWGVPGRSAADLLRSANASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLAVVPLGAESIGALVGMGIDQAWAAAALRRCGGNDVSRAVEYCFSHDMGALAEEDARAFEAATAADASQXXXXXXXXXXXXXXXXXXXXXXXXLDQEERRLFEARRSTAAATLATEQGTFGSK--------------------------DPPQRWGVADAEALMDGGGEDLLSQDTELREDGDEGXXXXXXXXXXXXRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQ 531          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: D7FKT3_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.660e-30
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1
Query: 1378 MQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            MQN GTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR
Sbjct:    1 MQNTGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 64          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: K8Z663_NANGC (Non-specific serine/threonine protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z663_NANGC)

HSP 1 Score: 128 bits (322), Expect = 8.070e-28
Identity = 94/211 (44.55%), Postives = 116/211 (54.98%), Query Frame = 1
Query: 1078 GGGRRKGKM-PLFKNSEGEVVSKHDAVICGRMNARDA-SNLEGVGDLTA-AGVRLGNRTFNSLKRDIRKK---KEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLL-EVHGMVKTGKEAHVYHA--LAP----EDPEAMT--------------------------GSRG--------VALKIFKTTLSEFGNRAAYVDGDPR 1569
            GG RR+ K   L+   EGEVVSKHDA I GR+NA +  S   GVGD+ A +G  + NR  N L++   K    K    AA G +E  TR TQEGV+D RTRLLL ++ N G+L  EV G+VKTGKE++VY+A  + P    ED E                             G RG         A+KIFKTTL+EF NRAAY+DGDPR
Sbjct:  199 GGRRRRQKQGELWTTWEGEVVSKHDAAINGRLNALELMSRYSGVGDVEAESGFSIPNRASNQLRQRFNKDEVAKNSSGAAAGAMEGRTRQTQEGVLDARTRLLLLRILNKGSLFREVGGVVKTGKESNVYYAPGVGPRGREEDGEGWREDGSGERERKVEGRVEEDKVLVEREGGGRGGRKAKGCDCAIKIFKTTLNEFSNRAAYIDGDPR 409          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A2P6N6M4_9EUKA (Non-specific serine/threonine protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N6M4_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 9.160e-22
Identity = 74/209 (35.41%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  970 DGGEDLVSKDTEL--------REDGDEGHMLEEXXXXXXFRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKG-MAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            D GE+   +D E+        R+ G EG +++E        A       +G+ P  K      V+KHD  I    NAR        G +    +R+ N  FN+L++++R+++ +     G +++ AT   +E VMDPRT+ ++FKM N+G L E+HG+V  GKEA+VYHA+   D E +  +   A+KIFKT+++EF NRA Y++GD R
Sbjct:  235 DEGEESEEEDDEIMLYLEEIRRQSGAEGSVVKETNEWGRAGA-------RGRTPSAKGVM--YVTKHDPTIAAIKNARVIEKYMESGSMKD--IRVSNPVFNNLRQNVRRQRTRANRVRGNKMDVAT---EEKVMDPRTKTIVFKMLNSGVLREIHGVVSAGKEANVYHAVTG-DYEGIESNVECAIKIFKTSMNEFKNRAEYLEGDYR 428          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A7S2RD27_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD27_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.490e-21
Identity = 66/164 (40.24%), Postives = 97/164 (59.15%), Query Frame = 1
Query: 1084 GRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDAS-NLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKE--KGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDP 1566
            GRR G +   +  +G +++KHDA + GR NAR AS N+ G+GDL+   V L N  +NSL+R +R+ +   KG+   G+V +   +T+EGV+DPRTR LL+++ N G L EV+G+VKTGKE+ VY A   E             K+F+    E    A  +D +P
Sbjct:  218 GRRGGGVDWIRLPDGSIITKHDAEVNGRENARLASDNMPGMGDLSEDDVLLPNTAYNSLRRAVRRTQGVVKGVYVKGKVSKEAVATREGVLDPRTRKLLWRLINKGALDEVYGVVKTGKESRVYLARGKE-------------KLFERPREEGSETATEMDSNP 368          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A443SQM9_9ACAR (Serine/threonine-protein kinase RIO3 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SQM9_9ACAR)

HSP 1 Score: 107 bits (267), Expect = 3.840e-21
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = 1
Query: 1096 GKMPLFKNSEGEVVS-KHDAVICGRMNARDASNLE-GVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            GK    K  +G+V++ KHDA +CGR NA      +   GD     ++L N  +N+LK  +    E G  A    E+  +S+ E VMD  TRLLL+K+ N G L E++G+V TGKEA+VYH +   DPE    +  VA+K++KTTLSEF NR  Y+  D R
Sbjct:  153 GKQGFAK--QGKVITTKHDANVCGRRNACKVMGFDISTGDGGGFDMKLNNNVYNALK--VHSVSE-GKRAARLHEKKEKSSAEHVMDETTRLLLYKLLNRGLLEEINGIVSTGKEANVYHGIGG-DPEKQITTGEVAIKVYKTTLSEFKNRDPYIKDDFR 306          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A8B8AAD8_CRAVI (Serine/threonine-protein kinase RIO3 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8AAD8_CRAVI)

HSP 1 Score: 107 bits (268), Expect = 4.080e-21
Identity = 64/149 (42.95%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 1132 VVSKHDAVICGRMNARDASNLEG---VGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            + +KHDAVICGR NA    +       GD     ++L N+ +N+LK     + ++      + E    ST E V+DPRT+LLL+KM NNGTL  V G + +GKE+ +YHA        +  S   A+KI+KTTL+EF NR AYVDGD R
Sbjct:  173 ITTKHDAVICGRRNASKIMDFGPDFHSGDGEGIDMKLSNKVYNTLKMHSLAENKRSQRLHEKKEF---STSEHVLDPRTKLLLYKMVNNGTLESVGGSISSGKESVIYHAYGGSKNGVLL-SPECAIKIYKTTLNEFKNRGAYVDGDHR 317          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: UPI001E1DE0D9 (serine/threonine-protein kinase RIO3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE0D9)

HSP 1 Score: 107 bits (266), Expect = 5.900e-21
Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 1099 KMPLFKNSEG------EVVSKHDAVICGRMNARDASNL--EGV-GDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            K P F N++G       + +KHDAVICGR NA    N   E V GD     ++L N  +N LKR    + ++      + E    ST E  MDPRTRL+L+K+ NNGTL  V G + TGKE+ V+HA      +    +  VA+K+FKTTL+EF  R  YV GD R
Sbjct:  155 KSPSF-NAQGYAGKGKNITTKHDAVICGRKNASKMMNFPPEFVSGDGEGMDMQLPNHVYNKLKRHSDSENKRNQRLHDKKEH---STAEHAMDPRTRLILYKLVNNGTLESVSGSISTGKESVVHHAFGGSIKDRSLPTE-VAIKVFKTTLNEFKTREKYVHGDHR 315          
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Match: A0A8B6DI75_MYTGA (Serine/threonine-protein kinase RIO3 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DI75_MYTGA)

HSP 1 Score: 106 bits (265), Expect = 8.910e-21
Identity = 70/167 (41.92%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 1099 KMPLFKN-----SEGEVVSKHDAVICGRMNARDASNLEGV---GDLTAAGVRLGNRTFNSLKR--DIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPR 1569
            K P FK      S   VV+KHD VICGR NA    +       GD  +  ++L NR +N LKR  D   K+ + +      E+   ST   VMD RTRL+L+K+ NNG L  + G + TGKE+ V+HA   E     T  +  A+K++KTTL+EF NR  YVDGD R
Sbjct:  173 KSPSFKKNGTVGSGKNVVTKHDKVICGRKNASKLMDFPPEFHSGDGESMDMQLNNRIYNKLKRHSDAENKRHQRLH-----EKKEHSTAGQVMDARTRLILYKLVNNGVLDSISGSISTGKESVVFHAYGGE-LNGETLPKECAIKVYKTTLNEFKNRGKYVDGDHR 333          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9151.20723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFL7_9PHAE1.390e-22088.00Non-specific serine/threonine protein kinase n=1 T... [more]
D7FKT4_ECTSI2.760e-13583.04UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FKT3_ECTSI1.660e-3098.44Non-specific serine/threonine protein kinase n=1 T... [more]
K8Z663_NANGC8.070e-2844.55Non-specific serine/threonine protein kinase n=2 T... [more]
A0A2P6N6M4_9EUKA9.160e-2235.41Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S2RD27_9STRA1.490e-2140.24Non-specific serine/threonine protein kinase (Frag... [more]
A0A443SQM9_9ACAR3.840e-2142.50Serine/threonine-protein kinase RIO3 n=1 Tax=Lepto... [more]
A0A8B8AAD8_CRAVI4.080e-2142.95Serine/threonine-protein kinase RIO3 n=2 Tax=Crass... [more]
UPI001E1DE0D95.900e-2142.17serine/threonine-protein kinase RIO3-like n=1 Tax=... [more]
A0A8B6DI75_MYTGA8.910e-2141.92Serine/threonine-protein kinase RIO3 n=2 Tax=Mytil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9151contigEcto-sp13_S_contig9151:2677..5924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score131.7
Seed ortholog evalue9.8e-28
Seed eggNOG ortholog2880.D7FKT3
Model size1574
KEGG koko:K07178
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsCOG1718@1,KOG2270@2759
Ec32 ortholog descriptionRIO-like kinase
Ec32 orthologEc-17_001300.1
EC2.7.11.1
Cds size1572
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.093152-CDS-Ecto-sp13_S_contig9151:2676..33571681464187.093152-CDS-Ecto-sp13_S_contig9151:2676..3357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9151 2677..3357 +
1681464187.1072764-CDS-Ecto-sp13_S_contig9151:3621..41061681464187.1072764-CDS-Ecto-sp13_S_contig9151:3621..4106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9151 3622..4106 +
1681464187.119121-CDS-Ecto-sp13_S_contig9151:4421..45731681464187.119121-CDS-Ecto-sp13_S_contig9151:4421..4573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9151 4422..4573 +
1681464187.1319757-CDS-Ecto-sp13_S_contig9151:5188..52741681464187.1319757-CDS-Ecto-sp13_S_contig9151:5188..5274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9151 5189..5274 +
1681464187.145276-CDS-Ecto-sp13_S_contig9151:5756..59241681464187.145276-CDS-Ecto-sp13_S_contig9151:5756..5924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9151 5757..5924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9151.20723.1prot_Ecto-sp13_S_contig9151.20723.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9151 2677..5924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9151.20723.1

>prot_Ecto-sp13_S_contig9151.20723.1 ID=prot_Ecto-sp13_S_contig9151.20723.1|Name=mRNA_Ecto-sp13_S_contig9151.20723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=524bp
RESYLYACTFCTPVVFPEPFSLLERVSRESPSTGRRWTQRRILLVAEDLQ
ISVILFFAPAALHAQEADAGRLFSRSCVFISPPKRSFQPLSDSPPPTRLP
LSRQTPNASQGAWGVPGRSAADLLRSANASAAPTLASQGQSSPPAHTTAA
RSSSAAADLAVVPLSAESIGALVGMGIDQAWAAAALRRCGGNDVSRAVEY
CFSHDMGALAEEDARAFEAATNADASQQQRQDNESQHQQPDADSDMAFAL
ALDQEERRLFEARRSTAAATLATEQGTFGSKVRVAASAAPAPPEGTGTGP
SAGGASQNPPQRWGVADAEGFLDDGGEDLVSKDTELREDGDEGHMLEEEE
EGGGFRAVPGGGRRKGKMPLFKNSEGEVVSKHDAVICGRMNARDASNLEG
VGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMD
PRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVA
LKIFKTTLSEFGNRAAYVDGDPR*
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mRNA from alignment at Ecto-sp13_S_contig9151:2677..5924+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9151.20723.1 ID=mRNA_Ecto-sp13_S_contig9151.20723.1|Name=mRNA_Ecto-sp13_S_contig9151.20723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9151:2677..5924+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAATCATATTTATACGCATGTACATTTTGTACCCCGGTTGTTTTCCC GGAGCCTTTCTCTCTTCTCGAACGTGTGTCGAGGGAATCGCCCTCAACAG GCAGACGTTGGACCCAGCGTCGTATACTCTTGGTGGCAGAGGATCTCCAA ATTTCTGTTATTTTGTTTTTTGCCCCCGCCGCTCTTCACGCTCAAGAGGC CGACGCGGGTCGACTCTTCTCCCGATCCTGCGTGTTCATTTCGCCTCCCA AACGTTCCTTTCAACCGCTTTCCGATTCGCCGCCCCCTACCCGCCTTCCC CTCTCGCGCCAGACCCCGAACGCGTCTCAGGGCGCATGGGGGGTTCCCGG ACGAAGCGCTGCCGACCTCCTACGCTCCGCCAACGCATCTGCAGCTCCTA CCCTCGCCTCGCAAGGACAATCATCTCCGCCTGCTCATACTACCGCCGCT CGCTCCTCCTCCGCCGCCGCCGACCTCGCGGTGGTGCCGCTGAGCGCCGA GTCGATCGGGGCATTGGTGGGCATGGGGATCGACCAGGCGTGGGCGGCCG CGGCGTTGCGGCGCTGCGGCGGTAACGACGTGAGCCGAGCCGTGGAATAC TGCTTCTCGCACGACATGGGGGCCTTAGCCGAGGAAGACGCGAGGGCCTT CGAGGCGGCGACTAACGCTGACGCGTCCCAGGTGGGGGGGGTGTACTCAT GTAAACGCATGCCGTAGTCGTTAGTCCATTGACCTCGCACCCCTGCAATG CCCGGGCGGAGCGACGTGTATGCCAGGTTTTCGCCGGCCCAGGGGTCGGT CCCCTTTTGGCTCCGTTATGTTTCTACGTTTGTATACCTCAGTTGATTCA GATCATTCGCCTACGGAAGCACGGCAAGTTCGCGCGAACCCTTGACTTCA GCCCCGTTCGCCTCGTTTTTGGACCCGCGATGGATGCCGAAGTAGCAGCA GCGGCAGGACAATGAGTCCCAGCACCAGCAGCCAGACGCAGACAGTGACA TGGCCTTCGCCCTGGCTCTGGACCAGGAAGAGAGAAGGTTGTTCGAGGCG CGCCGCTCCACCGCCGCGGCCACCCTGGCCACCGAACAGGGCACCTTCGG CTCCAAGGTCAGGGTCGCTGCCTCCGCCGCCCCCGCCCCCCCTGAGGGCA CCGGCACCGGGCCGTCCGCGGGGGGGGCGTCCCAGAACCCCCCCCAAAGA TGGGGAGTTGCCGATGCGGAAGGTTTCTTGGACGACGGTGGTGAAGATCT CGTGTCCAAGGACACCGAGTTACGCGAGGATGGAGATGAAGGCCATATGT TGGAGGAGGAGGAGGAGGGGGGGGGGTTTCGGGCTGTCCCGGGGGGGGGG CGGAGGAAGGGGAAGATGCCGCTCTTTAAGAACTCCGAGGGGGAGGTGGT GTCGAAGCACGACGCCGTCATTTGCGGGAGGTGAGAGGAGGAGGCTAACT AAACAGACAGAGAGAGGCAGCTAGGGGAAACGGAGCTCGAGTTCCAGCGA GAGGAGTCGTGGTGATGGTGGTGGTGCTTGACCCGAGCAACGGGAAACTT CTCTCACCTTATGGCGTGGTGTGTGGGACTCTCCTTTCACGCGCTATCAT TGCGCCTGCGCGCCTATCAAACAGACCACCGCCACACACATACCTCGAAA CCATGCCCCTCTCTCCCCGTAGTAGAATGAAGCTAACACCTCCCCCCGTC CCCACGCTACGCCACCCCTTTCGTACCTCGTCTCTCTCCCACAAGGATGA ACGCGCGAGACGCGTCCAACTTGGAGGGAGTCGGAGACCTGACGGCGGCC GGGGTGCGCCTCGGCAACCGCACGTTCAACAGCCTTAAGCGTGACATCCG CAAGAAGAAGGAGAAGGGCATGGCCGCCGGGGGCAGGGTCGAGCAGGGTG AGTGGGTGCCTGGAGCGACGACGATGACTCATTTTTTCATGGCGCTTCCT TCTCTCTCACACACACACTCCAAAGGGTGCGGTGGTTGGCGCTTGGTATC GTAGTGGCACACCCTCTTGCTCCGTGTTTCCCGGCTCTCTCTGCATGCTA TTAGTAGACACCACCTCTGTCACCCTCCCCTGCCTTTTAGACCCTCTTGT GGCGCGTTGTGGTGCGGTGCGGCGCGGTACTGTACGGTACGGTACGATAC GGTAAGGGGTAAGGCATGCACTGCTAAAGATGTAGCGCTGCGCAGTTCTT CCGCGGGGAGCGGGGACAACCAAGGGCCTCTTGGAGCCGTAGACACCAGT TGGCTCTCCCACACGTCTCAGTGAGGCATGTGAGAAAGTGTGATGATATA AACAGTTTGTTTACGAGCGAACTGCCGTGGGCGGCATACCGGGCATGTAG TTTGCTTTCGTGGTTTGTGTTTGGCAAAGTGATGGGTCATGACAGCAGTT GCGCAGGTGGTTTCCTCCCGGGTTGAACTGAAGCATTCTCCGTATGAGAA ATGATAGATGCCGAAAACATCTGAACCCCCCGAATCTTGGTCTGTTTGCA CCCCGCTGGCAGCCACGAGGTCTACCCAGGAAGGGGTCATGGACCCCCGC ACAAGGCTGCTCCTGTTCAAGATGCAGAACAACGGCACTCTCTTGGAGGT AGGTTTGTTTCGTTCATTTGCATGCTTGTTGGGTACAGTCATTTCAACTG TCAGCTACCACCCTTTTCCCAGTCCCGCCCCTTTTCGCCTCGTGTGCTAG TTTTCCTTGCAAGCTTGCGGCCCTGGCTGCTTGTTTGGCTTTCGCTGCTG TTGTCTCCAATTTTCAACACACTTTAGTGATGTCCGGTACCTTCTCTTTG TTCCCCATGCTGCATACCTCTTTTAAGGCAAGTTTTTTTTTACCGTGGTC ACCAGATAAACCTAAATATGGCACTGTCTGCTCGAATTGGATACATAGCA GTATGTGTCTCAAAAGAGTACATCTTGCTCTTCTCGGTGATGGGATGTCT GTCGCCTGTCTCCTCCCCCCCCTTCCTGTACAACACGCCCGGCTCCGCTA CTTGTGATCTGAAATACCTCGTCGAACTAATCCCCATTCCATGGCTGGGC TTCGTCCCGTACCACATGTGCTACCCACAGGTTCACGGGATGGTTAAGAC AGGGAAGGAGGCCCATGTTTACCACGCTCTCGCACCCGAAGACCCCGAAG CCATGACGGGTAGCCGAGGTGTCGCGTTGAAGATTTTCAAGACGACGCTC AGCGAGTTTGGAAACCGTGCGGCGTACGTTGATGGGGACCCTCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9151:2677..5924+

>mRNA_Ecto-sp13_S_contig9151.20723.1 ID=mRNA_Ecto-sp13_S_contig9151.20723.1|Name=mRNA_Ecto-sp13_S_contig9151.20723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1572bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9151:2677..5924+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAATCATATTTATACGCATGTACATTTTGTACCCCGGTTGTTTTCCC
GGAGCCTTTCTCTCTTCTCGAACGTGTGTCGAGGGAATCGCCCTCAACAG
GCAGACGTTGGACCCAGCGTCGTATACTCTTGGTGGCAGAGGATCTCCAA
ATTTCTGTTATTTTGTTTTTTGCCCCCGCCGCTCTTCACGCTCAAGAGGC
CGACGCGGGTCGACTCTTCTCCCGATCCTGCGTGTTCATTTCGCCTCCCA
AACGTTCCTTTCAACCGCTTTCCGATTCGCCGCCCCCTACCCGCCTTCCC
CTCTCGCGCCAGACCCCGAACGCGTCTCAGGGCGCATGGGGGGTTCCCGG
ACGAAGCGCTGCCGACCTCCTACGCTCCGCCAACGCATCTGCAGCTCCTA
CCCTCGCCTCGCAAGGACAATCATCTCCGCCTGCTCATACTACCGCCGCT
CGCTCCTCCTCCGCCGCCGCCGACCTCGCGGTGGTGCCGCTGAGCGCCGA
GTCGATCGGGGCATTGGTGGGCATGGGGATCGACCAGGCGTGGGCGGCCG
CGGCGTTGCGGCGCTGCGGCGGTAACGACGTGAGCCGAGCCGTGGAATAC
TGCTTCTCGCACGACATGGGGGCCTTAGCCGAGGAAGACGCGAGGGCCTT
CGAGGCGGCGACTAACGCTGACGCGTCCCAGCAGCAGCGGCAGGACAATG
AGTCCCAGCACCAGCAGCCAGACGCAGACAGTGACATGGCCTTCGCCCTG
GCTCTGGACCAGGAAGAGAGAAGGTTGTTCGAGGCGCGCCGCTCCACCGC
CGCGGCCACCCTGGCCACCGAACAGGGCACCTTCGGCTCCAAGGTCAGGG
TCGCTGCCTCCGCCGCCCCCGCCCCCCCTGAGGGCACCGGCACCGGGCCG
TCCGCGGGGGGGGCGTCCCAGAACCCCCCCCAAAGATGGGGAGTTGCCGA
TGCGGAAGGTTTCTTGGACGACGGTGGTGAAGATCTCGTGTCCAAGGACA
CCGAGTTACGCGAGGATGGAGATGAAGGCCATATGTTGGAGGAGGAGGAG
GAGGGGGGGGGGTTTCGGGCTGTCCCGGGGGGGGGGCGGAGGAAGGGGAA
GATGCCGCTCTTTAAGAACTCCGAGGGGGAGGTGGTGTCGAAGCACGACG
CCGTCATTTGCGGGAGGATGAACGCGCGAGACGCGTCCAACTTGGAGGGA
GTCGGAGACCTGACGGCGGCCGGGGTGCGCCTCGGCAACCGCACGTTCAA
CAGCCTTAAGCGTGACATCCGCAAGAAGAAGGAGAAGGGCATGGCCGCCG
GGGGCAGGGTCGAGCAGGCCACGAGGTCTACCCAGGAAGGGGTCATGGAC
CCCCGCACAAGGCTGCTCCTGTTCAAGATGCAGAACAACGGCACTCTCTT
GGAGGTTCACGGGATGGTTAAGACAGGGAAGGAGGCCCATGTTTACCACG
CTCTCGCACCCGAAGACCCCGAAGCCATGACGGGTAGCCGAGGTGTCGCG
TTGAAGATTTTCAAGACGACGCTCAGCGAGTTTGGAAACCGTGCGGCGTA
CGTTGATGGGGACCCTCGGTGA
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