mRNA_Ecto-sp13_S_contig91507.20722.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91507.20722.1
Unique NamemRNA_Ecto-sp13_S_contig91507.20722.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91507.20722.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.230e-23
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 TGEGAQCEDLAEGNELIKSLQAKSALSKDRYFQETLDTYNVHNFK 135
            TGEGAQCEDLAEGNELIKSLQAKSA+SKDRYFQETLDTYNVHNFK
Sbjct:   87 TGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFK 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91507.20722.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 2.900e-8
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 GEGAQCEDLAEGNELIKSLQAKSALSKDRYFQETLDTYNVHNF 132
            G G  C DL+EGNELI+SLQ KSA++++RY QE LD Y + N+
Sbjct:   54 GVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNY 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91507.20722.1 vs. uniprot
Match: A0A7S0CI77_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI77_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.800e-6
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 GEGAQCEDLAEGNELIKSLQAKSALSKDRYFQETLDTYNVHNF 132
            GEG+ C+++A+GN+ I+SLQ KSA  K+ Y +E+LD Y + N+
Sbjct:   65 GEGSACDEIADGNKFIQSLQQKSAARKEIYAKESLDAYYMKNY 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91507.20722.1 vs. uniprot
Match: B7G784_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G784_PHATC)

HSP 1 Score: 45.4 bits (106), Expect = 8.110e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 TGEGAQCEDLAEGNELIKSLQAKSALSKDRYFQ 99
            +G G  C+DL+EGNELIKSLQ KSA  +D+Y Q
Sbjct:   62 SGVGDGCDDLSEGNELIKSLQEKSAAKRDQYAQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91507.20722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FLT7_ECTSI6.230e-2397.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5KK89_FISSO2.900e-858.14Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0CI77_9STRA2.800e-648.84Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G784_PHATC8.110e-563.64Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91507contigEcto-sp13_S_contig91507:40..177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.6
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D7FLT7
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CACH@1,2SH2H@2759
Cds size138
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464187.0632274-CDS-Ecto-sp13_S_contig91507:39..1771681464187.0632274-CDS-Ecto-sp13_S_contig91507:39..177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91507 40..177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91507.20722.1prot_Ecto-sp13_S_contig91507.20722.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91507 40..177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91507.20722.1

>prot_Ecto-sp13_S_contig91507.20722.1 ID=prot_Ecto-sp13_S_contig91507.20722.1|Name=mRNA_Ecto-sp13_S_contig91507.20722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
TGEGAQCEDLAEGNELIKSLQAKSALSKDRYFQETLDTYNVHNFKG
back to top

mRNA from alignment at Ecto-sp13_S_contig91507:40..177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91507.20722.1 ID=mRNA_Ecto-sp13_S_contig91507.20722.1|Name=mRNA_Ecto-sp13_S_contig91507.20722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91507:40..177- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGGCGAGGGTGCGCAATGCGAGGACTTGGCGGAGGGGAACGAGCTCAT
CAAGTCTCTCCAGGCCAAGTCGGCGCTCTCGAAAGACCGTTACTTCCAGG
AGACCCTCGACACCTACAACGTCCACAATTTTAAAGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91507:40..177-

>mRNA_Ecto-sp13_S_contig91507.20722.1 ID=mRNA_Ecto-sp13_S_contig91507.20722.1|Name=mRNA_Ecto-sp13_S_contig91507.20722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91507:40..177- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGGCGAGGGTGCGCAATGCGAGGACTTGGCGGAGGGGAACGAGCTCAT
CAAGTCTCTCCAGGCCAAGTCGGCGCTCTCGAAAGACCGTTACTTCCAGG
AGACCCTCGACACCTACAACGTCCACAATTTTAAAGGC
back to top