mRNA_Ecto-sp13_S_contig9140.20708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9140.20708.1
Unique NamemRNA_Ecto-sp13_S_contig9140.20708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9140.20708.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.030e-6
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -1 
Query:  672 MYWYPGGLEADSSTCVVEGWKTHK 743
            MYWYPGGLE DS+TCVVEGWKTHK
Sbjct:  189 MYWYPGGLEVDSTTCVVEGWKTHK 212
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BLAST of mRNA_Ecto-sp13_S_contig9140.20708.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.440e-6
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = -1 
Query:  675 MYWYPGGLEADSSTCVVEGWKTH 743
            MYWYPGGLEADS+TCVVEGWKTH
Sbjct:  221 MYWYPGGLEADSNTCVVEGWKTH 243
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BLAST of mRNA_Ecto-sp13_S_contig9140.20708.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.700e-6
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = -1 
Query:  675 MYWYPGGLEADSSTCVVEGWKTH 743
            MYWYPGGLE DS+TCV+EGWKTH
Sbjct:  149 MYWYPGGLETDSTTCVIEGWKTH 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9140.20708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K474_9PHAE1.030e-691.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD1_ECTSI1.440e-695.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JN97_9PHAE5.700e-686.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9140contigEcto-sp13_S_contig9140:2834..3576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size743
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.884093-UTR-Ecto-sp13_S_contig9140:2833..31861681464185.884093-UTR-Ecto-sp13_S_contig9140:2833..3186Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9140 2834..3186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.8981986-CDS-Ecto-sp13_S_contig9140:3186..35761681464185.8981986-CDS-Ecto-sp13_S_contig9140:3186..3576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9140 3187..3576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9140.20708.1prot_Ecto-sp13_S_contig9140.20708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9140 3187..3576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9140.20708.1

>prot_Ecto-sp13_S_contig9140.20708.1 ID=prot_Ecto-sp13_S_contig9140.20708.1|Name=mRNA_Ecto-sp13_S_contig9140.20708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MIYAGRGIGTKCDLVCGTGLEPIGSFGQTVFVFSGNRTFLKSECHAHLLV
RPRASGRQESRRNGCGGTTMATHWALTRRITTHTTLGNTSLFHGEGTHPS
SAMKASLVSLPPLDDASAGIGFKATRIPVH
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mRNA from alignment at Ecto-sp13_S_contig9140:2834..3576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9140.20708.1 ID=mRNA_Ecto-sp13_S_contig9140.20708.1|Name=mRNA_Ecto-sp13_S_contig9140.20708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9140:2834..3576+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGATGCAGCTGTAGGGGACTTGGATCCCGGTTGATACTTGTTCTGACACT
GGATCGTTCAAAAAGACGTACATCCATTGGCTGCGTGGTGCGCGACACAA
ACAGGGCGTACAGGAGAAACGGTTACCCTTACCTCATTGAGGAGATGCAA
ACTTGCCGTATCAACCAGAGTGTGAGCCATAGCTCAAACAGGGGCGGTGG
GTCTGGAGGCTGTGCGTTGTGGGGAAACACTATCTTGACTACTGTTTACT
AAGAGTCCTGTGCCAAAACCGTCAATTTTCTTAACCTGAGCACCTTGTTT
CACAAGACGTCGACCGGGCACTCATTCTTGCTCCACCAACTTTGAACCAG
GCCATGATTTACGCTGGGCGGGGTATCGGGACCAAGTGTGACCTCGTATG
TGGTACCGGCCTCGAACCCATTGGGAGCTTTGGGCAAACCGTCTTTGTCT
TTTCTGGGAATCGAACGTTTCTGAAGTCAGAGTGTCACGCGCACCTCCTT
GTGCGACCAAGAGCGTCCGGACGCCAGGAAAGCCGGCGGAACGGTTGTGG
AGGTACCACCATGGCAACACATTGGGCGTTGACGCGACGGATAACAACAC
ACACTACTCTCGGCAACACCTCGTTATTTCATGGTGAGGGGACGCATCCC
TCATCGGCCATGAAAGCCTCACTTGTGAGTCTTCCACCCCTCGACGACGC
AAGTGCTGGAATCGGCTTCAAGGCCACCCGGATACCAGTACAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9140:2834..3576+

>mRNA_Ecto-sp13_S_contig9140.20708.1 ID=mRNA_Ecto-sp13_S_contig9140.20708.1|Name=mRNA_Ecto-sp13_S_contig9140.20708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9140:2834..3576+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTACGCTGGGCGGGGTATCGGGACCAAGTGTGACCTCGTATGTGG
TACCGGCCTCGAACCCATTGGGAGCTTTGGGCAAACCGTCTTTGTCTTTT
CTGGGAATCGAACGTTTCTGAAGTCAGAGTGTCACGCGCACCTCCTTGTG
CGACCAAGAGCGTCCGGACGCCAGGAAAGCCGGCGGAACGGTTGTGGAGG
TACCACCATGGCAACACATTGGGCGTTGACGCGACGGATAACAACACACA
CTACTCTCGGCAACACCTCGTTATTTCATGGTGAGGGGACGCATCCCTCA
TCGGCCATGAAAGCCTCACTTGTGAGTCTTCCACCCCTCGACGACGCAAG
TGCTGGAATCGGCTTCAAGGCCACCCGGATACCAGTACAT
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