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Homology
BLAST of mRNA_Ecto-sp13_S_contig9138.20705.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE) HSP 1 Score: 889 bits (2296), Expect = 2.570e-309 Identity = 703/875 (80.34%), Postives = 717/875 (81.94%), Query Frame = 3
Query: 81 NDQHWEQLKQAQHQPHPQHHPAAASWSGGVNTLADVGGRTNSLAIAHNQHQ--LQQAPYVQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPYPTAAAATAASWAANRVPAPPPADNRATNQYPAGRSVSYSPPLRATAPPAGGAADGPAHRPLRVVDXXXXXXXXXXXXSGGSG--RPTSRGTYPASGNSLSGFAQQPNAGGXXXXXXXXXXX-----------GSKNAGGKQQEESRGKAPAARETARVSSGIWRGRGXXXXXXXXXXXXXXXXXGSLDLSNLRTSMPGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIEEGEAGEEVTAAAKPSAVARGEDRESAFSDRRSENAERSPERGTACAAXXXXXDEEIEEGEWCWQEKTEGSPRSEQPGAATEVGAAXXXXXGDRRSPSGGGRANGDRSSSTWDGSRGGSPTRPSSISGKRGREQSSLSPPRGPAKYTARSGRDPRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQDWRQERQPPSLALPSPAAQAATTAPGTSPSXXXXXXXXXXXXXXXXXXXXXXXXGGVSFVSLPAASPATPPRPLLSLPHPPHGPPRLMYAVPXXXXXXXXXL--------QFVVQPGMTVTVPATTLGAXXXXXXXXXXXXXXXXXXXXXXXXXXVAPSTAVPLSLPMPMAPAAXXXXXXXXXXXXXXXXXPRKPRRGGLKKPSQGGGG-GLKLTVRVSDAEPSAQEAPVFSSDDDDDEKPGRVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDDREWPEYPKTMTR 2633
NDQ WEQ+KQAQHQPHPQ HPAAASWSGGVNTLA VGGRTNSLAIAHNQHQ LQQAPYVQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXX SWAANRVPAPPPADNRATNQ+PAGR+VSYSPPLRA APPAGGA DG AHRP XXXXXXXXXXXX RPTSRGTYPA GNSLSGFAQQPN XXXXXXXXXXX G+KNAGGKQQEES GKAPAARETARVSSGIWRGRGXXXXXXXXXXXXXXXXX LDLSNLRTSMPGR XXXXXXXXXXXXX XXXXXXXXXX IEEGEAGEEV AAAKPSAVARGE+R +A +DRRSENAERSPERGTA A XXX DEEIEEGEWCWQEKTEGSP+SEQPGAA VG XXXXX RRSPSGGGRANG+RSSSTWDGSRGGSPTRP S SGKRGREQSSLSPPRGPAKYTARSGRDPRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQDWRQER+PPSLALPSPAAQAA TAPGTSPSXXXX XXXXXXXXXXX VSFVSLPAASPA PPRPLLSLPHPPHGPPRLMYAV XXXXXXX QFV+QPGMTVTVP TTLGA XXXXVAPSTAVPLSLPMPMAPAA X XXXXXXXXXX RKPRRGGLKKPSQG GLKLTVRVSDAEPSAQEAPVFSSDD+DD+KPGRVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPD+REWPEYPKTMTR
Sbjct: 19 NDQRWEQVKQAQHQPHPQQHPAAASWSGGVNTLASVGGRTNSLAIAHNQHQHQLQQAPYVQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWAANRVPAPPPADNRATNQHPAGRNVSYSPPLRAVAPPAGGATDGSAHRPXXXXXXXXXXXXXXXXXXXXXXXXRPTSRGTYPACGNSLSGFAQQPNGXXXXXXXXXXXXXXXXXXXXXXLTGAKNAGGKQQEESHGKAPAARETARVSSGIWRGRGXXXXXXXXXXXXXXXXXXXLDLSNLRTSMPGRXXXXXXXXXXXXXXVAGRATALNSIEAEKSGSXXXXXXXXXX---------------IEEGEAGEEVAAAAKPSAVARGEERAAALNDRRSENAERSPERGTASATAXXXADEEIEEGEWCWQEKTEGSPKSEQPGAAAGVGXXXXXXX--RRSPSGGGRANGNRSSSTWDGSRGGSPTRPPSTSGKRGREQSSLSPPRGPAKYTARSGRDPRGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQDWRQERRPPSLALPSPAAQAAATAPGTSPSXXXXQQLQPSYGAXXXXXXXXXXXXXVSFVSLPAASPAPPPRPLLSLPHPPHGPPRLMYAVLPPXXXXXXXXPQPXXXXPQFVIQPGMTVTVPGTTLGAAAGPIMLRPPAPLLFTPPPVTAXXXXVAPSTAVPLSLPMPMAPAAPPRPXTFXXXXXXXXXXXRKPRRGGLKKPSQGXXXXGLKLTVRVSDAEPSAQEAPVFSSDDEDDDKPGRVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTR 876
BLAST of mRNA_Ecto-sp13_S_contig9138.20705.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI) HSP 1 Score: 249 bits (635), Expect = 1.870e-72 Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 3
Query: 2268 LKLTVRVSDAEPSAQEAPVFSSDDDDDEKPGRVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDDREWPEYPKTMTR 2633
LKLTVRVSDAEPSAQEAPVFSSDDDDD KPG VSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAG+RDCVEGAVNNTPPRRLSPPPEALPD+REWPEYPKTMTR
Sbjct: 45 LKLTVRVSDAEPSAQEAPVFSSDDDDD-KPGGVSRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGNRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTR 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 2633 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-11_000240.1 |
| Cds size | 2607 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464185.650108-UTR-Ecto-sp13_S_contig9138:3437..3463 | 1681464185.650108-UTR-Ecto-sp13_S_contig9138:3437..3463 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9138 3438..3463 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464185.6638207-CDS-Ecto-sp13_S_contig9138:3463..6070 | 1681464185.6638207-CDS-Ecto-sp13_S_contig9138:3463..6070 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9138 3464..6070 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9138.20705.1 >prot_Ecto-sp13_S_contig9138.20705.1 ID=prot_Ecto-sp13_S_contig9138.20705.1|Name=mRNA_Ecto-sp13_S_contig9138.20705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=869bp
MQQQHFFSGGGAAATSGGNDQHWEQLKQAQHQPHPQHHPAAASWSGGVNT LADVGGRTNSLAIAHNQHQLQQAPYVQQHQQQQQQQRTPPPPHPVYDSSR HSSNGAAEPYPTAAAATAASWAANRVPAPPPADNRATNQYPAGRSVSYSP PLRATAPPAGGAADGPAHRPLRVVDDDRGGGGGGGGDSGGSGRPTSRGTY PASGNSLSGFAQQPNAGGGGGGSGSGSLSGSKNAGGKQQEESRGKAPAAR ETARVSSGIWRGRGGGRFRGRGFGVGRGAGRGSLDLSNLRTSMPGRGGGG GGGGSSAAAGGGAAGAAAGRAAALNSKEAEKSGSSSSSGSSSRSSSSSSK NEEIEEGEAGEEVTAAAKPSAVARGEDRESAFSDRRSENAERSPERGTAC AAAAAADDEEIEEGEWCWQEKTEGSPRSEQPGAATEVGAAAAAAAGDRRS PSGGGRANGDRSSSTWDGSRGGSPTRPSSISGKRGREQSSLSPPRGPAKY TARSGRDPRGFRGAASAATAESTRRPDRGGDGSATSPQSPSSAGQDWRQE RQPPSLALPSPAAQAATTAPGTSPSSPPQQQLQSSYGAPPTRAPPPPAAG GVSFVSLPAASPATPPRPLLSLPHPPHGPPRLMYAVPPPPRQQQQQLQFV VQPGMTVTVPATTLGAAAGPIMLRPPPPPLFTPPPVTAAAAAVAPSTAVP LSLPMPMAPAAPPRPPTFVPPPAPAAAAPRKPRRGGLKKPSQGGGGGLKL TVRVSDAEPSAQEAPVFSSDDDDDEKPGRVSRRDTRGEWPHEFKFRPQLG GSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPP PEALPDDREWPEYPKTMTR back to topmRNA from alignment at Ecto-sp13_S_contig9138:3438..6070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9138.20705.1 ID=mRNA_Ecto-sp13_S_contig9138.20705.1|Name=mRNA_Ecto-sp13_S_contig9138.20705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9138:3438..6070+ (Ectocarpus species13 EcNAP12_S_4_19m) GATCCCTTTTACGGGGAAGTACACGGATGCAACAGCAACATTTCTTTTCT
GGAGGCGGTGCTGCTGCCACCAGCGGGGGCAACGATCAGCATTGGGAGCA
GTTGAAACAAGCGCAGCATCAACCCCATCCTCAGCACCACCCTGCGGCAG
CATCATGGAGCGGGGGAGTCAACACCCTGGCGGACGTTGGCGGGCGCACC
AACAGCTTGGCGATCGCCCACAACCAGCACCAGCTCCAGCAGGCTCCATA
TGTCCAGCAACATCAGCAGCAGCAGCAGCAGCAGCGCACGCCTCCTCCTC
CTCACCCAGTGTATGACAGCAGCAGGCATTCTTCCAACGGAGCGGCGGAA
CCGTACCCAACGGCGGCGGCGGCGACGGCGGCATCATGGGCAGCCAACCG
AGTCCCGGCGCCCCCCCCCGCCGACAATCGAGCGACCAACCAGTATCCAG
CGGGAAGAAGCGTAAGTTATTCCCCTCCTCTCCGTGCTACTGCTCCTCCT
GCCGGCGGCGCCGCCGATGGGCCGGCGCATCGTCCGCTGCGTGTCGTTGA
CGACGACCGCGGCGGCGGCGGCGGCGGCGGCGGTGACAGCGGTGGTAGCG
GCCGGCCTACCTCACGCGGAACGTATCCGGCTAGCGGAAATTCTCTCAGC
GGGTTCGCGCAGCAGCCGAACGCTGGCGGCGGCGGCGGCGGCAGCGGCTC
TGGCTCTTTGTCAGGCTCGAAAAATGCGGGGGGAAAGCAGCAGGAGGAAA
GCCGCGGCAAGGCGCCGGCGGCTCGGGAGACGGCCCGGGTTTCTTCCGGC
ATCTGGCGAGGGAGAGGGGGCGGGAGGTTTAGAGGGAGAGGGTTCGGGGT
AGGGCGAGGGGCGGGACGAGGGTCGCTCGATCTTTCGAATCTCCGAACTT
CCATGCCGGGTCGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGCGGCA
GCGGGGGGGGGGGCGGCGGGGGCGGCGGCGGGGAGAGCGGCAGCACTAAA
CAGCAAAGAAGCAGAAAAGTCAGGCAGCAGCAGCAGCAGCGGCAGCAGCA
GCAGAAGTAGCAGCAGCAGTAGTAAGAACGAGGAGATAGAAGAGGGGGAG
GCGGGGGAGGAGGTAACCGCAGCAGCTAAGCCCTCGGCAGTCGCCAGGGG
CGAGGATAGGGAATCAGCATTTAGCGACAGGCGTAGTGAGAACGCGGAGA
GGAGTCCAGAACGGGGTACGGCTTGCGCAGCAGCAGCAGCAGCAGACGAT
GAAGAAATAGAGGAAGGCGAGTGGTGTTGGCAGGAGAAAACTGAAGGGAG
TCCCAGGTCGGAGCAACCCGGCGCAGCAACCGAGGTCGGGGCTGCGGCGG
CCGCGGCGGCGGGGGATCGTCGATCTCCAAGCGGCGGTGGCCGTGCGAAC
GGGGACAGGAGCAGCAGCACCTGGGACGGCAGCCGCGGCGGCTCGCCGAC
ACGACCTTCGAGCATAAGCGGGAAGAGGGGCCGGGAGCAGTCGAGCTTGT
CGCCCCCGAGGGGCCCAGCCAAGTACACCGCGAGGAGCGGTCGTGACCCA
CGAGGGTTTCGCGGCGCCGCCTCCGCCGCCACCGCCGAATCCACCCGGCG
GCCGGATCGAGGGGGCGACGGTAGCGCCACCAGCCCTCAGAGCCCGTCGT
CCGCGGGACAAGACTGGCGGCAAGAGCGGCAACCCCCGTCTCTGGCTCTT
CCCTCGCCAGCCGCCCAAGCCGCCACCACCGCCCCGGGGACCTCGCCGTC
CTCACCGCCTCAGCAGCAGCTGCAGTCGAGCTACGGGGCCCCTCCGACGC
GTGCTCCCCCCCCCCCCGCCGCCGGAGGGGTTTCTTTCGTTTCTCTCCCG
GCGGCGTCGCCCGCAACCCCCCCACGGCCTCTCTTGTCGCTGCCTCACCC
ACCCCACGGACCCCCTCGGCTGATGTACGCGGTGCCCCCACCGCCACGGC
AGCAGCAGCAGCAGCTGCAATTTGTCGTTCAACCGGGCATGACTGTCACG
GTCCCGGCCACGACGCTAGGGGCGGCGGCAGGACCGATTATGCTGCGACC
CCCGCCGCCGCCGCTCTTCACGCCGCCGCCGGTAACGGCGGCGGCGGCGG
CGGTGGCACCTTCTACGGCGGTTCCCTTGTCCTTGCCGATGCCGATGGCG
CCGGCGGCGCCACCACGGCCGCCAACGTTTGTGCCGCCCCCGGCGCCTGC
CGCCGCGGCTCCGCGAAAACCCAGGCGTGGAGGGTTGAAGAAGCCATCCC
AGGGCGGCGGCGGCGGCCTAAAACTGACGGTTCGGGTGTCGGACGCGGAG
CCTTCGGCGCAGGAAGCTCCGGTATTTTCTTCGGACGACGACGACGACGA
GAAGCCAGGCAGGGTCTCGCGGCGGGACACACGAGGCGAGTGGCCGCACG
AGTTCAAGTTCCGGCCTCAGCTGGGGGGCAGCAGGAAGGTGTGCGCCGTC
TGCGGGAAGGACTTCGTGCGCATCTGCACGGCCTGTGGGAAGTGCATGGA
GTGCTTCCGCGCGGGGGACAGGGATTGCGTGGAGGGTGCGGTGAACAACA
CGCCGCCGCGGCGGCTCTCGCCCCCGCCGGAGGCGTTGCCGGATGACAGA
GAATGGCCAGAGTACCCCAAGACTATGACGAGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9138:3438..6070+ >mRNA_Ecto-sp13_S_contig9138.20705.1 ID=mRNA_Ecto-sp13_S_contig9138.20705.1|Name=mRNA_Ecto-sp13_S_contig9138.20705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9138:3438..6070+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCAACAGCAACATTTCTTTTCTGGAGGCGGTGCTGCTGCCACCAGCGG GGGCAACGATCAGCATTGGGAGCAGTTGAAACAAGCGCAGCATCAACCCC ATCCTCAGCACCACCCTGCGGCAGCATCATGGAGCGGGGGAGTCAACACC CTGGCGGACGTTGGCGGGCGCACCAACAGCTTGGCGATCGCCCACAACCA GCACCAGCTCCAGCAGGCTCCATATGTCCAGCAACATCAGCAGCAGCAGC AGCAGCAGCGCACGCCTCCTCCTCCTCACCCAGTGTATGACAGCAGCAGG CATTCTTCCAACGGAGCGGCGGAACCGTACCCAACGGCGGCGGCGGCGAC GGCGGCATCATGGGCAGCCAACCGAGTCCCGGCGCCCCCCCCCGCCGACA ATCGAGCGACCAACCAGTATCCAGCGGGAAGAAGCGTAAGTTATTCCCCT CCTCTCCGTGCTACTGCTCCTCCTGCCGGCGGCGCCGCCGATGGGCCGGC GCATCGTCCGCTGCGTGTCGTTGACGACGACCGCGGCGGCGGCGGCGGCG GCGGCGGTGACAGCGGTGGTAGCGGCCGGCCTACCTCACGCGGAACGTAT CCGGCTAGCGGAAATTCTCTCAGCGGGTTCGCGCAGCAGCCGAACGCTGG CGGCGGCGGCGGCGGCAGCGGCTCTGGCTCTTTGTCAGGCTCGAAAAATG CGGGGGGAAAGCAGCAGGAGGAAAGCCGCGGCAAGGCGCCGGCGGCTCGG GAGACGGCCCGGGTTTCTTCCGGCATCTGGCGAGGGAGAGGGGGCGGGAG GTTTAGAGGGAGAGGGTTCGGGGTAGGGCGAGGGGCGGGACGAGGGTCGC TCGATCTTTCGAATCTCCGAACTTCCATGCCGGGTCGCGGCGGCGGCGGC GGCGGCGGCGGCAGCAGCGCGGCAGCGGGGGGGGGGGCGGCGGGGGCGGC GGCGGGGAGAGCGGCAGCACTAAACAGCAAAGAAGCAGAAAAGTCAGGCA GCAGCAGCAGCAGCGGCAGCAGCAGCAGAAGTAGCAGCAGCAGTAGTAAG AACGAGGAGATAGAAGAGGGGGAGGCGGGGGAGGAGGTAACCGCAGCAGC TAAGCCCTCGGCAGTCGCCAGGGGCGAGGATAGGGAATCAGCATTTAGCG ACAGGCGTAGTGAGAACGCGGAGAGGAGTCCAGAACGGGGTACGGCTTGC GCAGCAGCAGCAGCAGCAGACGATGAAGAAATAGAGGAAGGCGAGTGGTG TTGGCAGGAGAAAACTGAAGGGAGTCCCAGGTCGGAGCAACCCGGCGCAG CAACCGAGGTCGGGGCTGCGGCGGCCGCGGCGGCGGGGGATCGTCGATCT CCAAGCGGCGGTGGCCGTGCGAACGGGGACAGGAGCAGCAGCACCTGGGA CGGCAGCCGCGGCGGCTCGCCGACACGACCTTCGAGCATAAGCGGGAAGA GGGGCCGGGAGCAGTCGAGCTTGTCGCCCCCGAGGGGCCCAGCCAAGTAC ACCGCGAGGAGCGGTCGTGACCCACGAGGGTTTCGCGGCGCCGCCTCCGC CGCCACCGCCGAATCCACCCGGCGGCCGGATCGAGGGGGCGACGGTAGCG CCACCAGCCCTCAGAGCCCGTCGTCCGCGGGACAAGACTGGCGGCAAGAG CGGCAACCCCCGTCTCTGGCTCTTCCCTCGCCAGCCGCCCAAGCCGCCAC CACCGCCCCGGGGACCTCGCCGTCCTCACCGCCTCAGCAGCAGCTGCAGT CGAGCTACGGGGCCCCTCCGACGCGTGCTCCCCCCCCCCCCGCCGCCGGA GGGGTTTCTTTCGTTTCTCTCCCGGCGGCGTCGCCCGCAACCCCCCCACG GCCTCTCTTGTCGCTGCCTCACCCACCCCACGGACCCCCTCGGCTGATGT ACGCGGTGCCCCCACCGCCACGGCAGCAGCAGCAGCAGCTGCAATTTGTC GTTCAACCGGGCATGACTGTCACGGTCCCGGCCACGACGCTAGGGGCGGC GGCAGGACCGATTATGCTGCGACCCCCGCCGCCGCCGCTCTTCACGCCGC CGCCGGTAACGGCGGCGGCGGCGGCGGTGGCACCTTCTACGGCGGTTCCC TTGTCCTTGCCGATGCCGATGGCGCCGGCGGCGCCACCACGGCCGCCAAC GTTTGTGCCGCCCCCGGCGCCTGCCGCCGCGGCTCCGCGAAAACCCAGGC GTGGAGGGTTGAAGAAGCCATCCCAGGGCGGCGGCGGCGGCCTAAAACTG ACGGTTCGGGTGTCGGACGCGGAGCCTTCGGCGCAGGAAGCTCCGGTATT TTCTTCGGACGACGACGACGACGAGAAGCCAGGCAGGGTCTCGCGGCGGG ACACACGAGGCGAGTGGCCGCACGAGTTCAAGTTCCGGCCTCAGCTGGGG GGCAGCAGGAAGGTGTGCGCCGTCTGCGGGAAGGACTTCGTGCGCATCTG CACGGCCTGTGGGAAGTGCATGGAGTGCTTCCGCGCGGGGGACAGGGATT GCGTGGAGGGTGCGGTGAACAACACGCCGCCGCGGCGGCTCTCGCCCCCG CCGGAGGCGTTGCCGGATGACAGAGAATGGCCAGAGTACCCCAAGACTAT GACGAGG back to top
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