mRNA_Ecto-sp13_S_contig9136.20703.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9136.20703.1
Unique NamemRNA_Ecto-sp13_S_contig9136.20703.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9136.20703.1 vs. uniprot
Match: D7FP24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP24_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 2.160e-81
Identity = 176/222 (79.28%), Postives = 180/222 (81.08%), Query Frame = 1 
Query:    1 KTERALELLSTDPRCRTLNDFCSSDGARPTVLGEWLPNGPSRPQHGGGGTSGSGASYDCYHNDGAGDAXXXXXXRR--QSANIWLTVGQRRGRPVLRSLYCCGCAYRRVTCCYVVLYRPCNPDVLEYLPTIKKNASSGXXXXXXXXXXXXXXXXXXXXXXXXXXXPHGENGSPLSRAADNAAEPPLSSAXXTAGASGARDEDGHGAAAGVGGGDREVHVGVN 660
            +TERALELLS DPRCRTLNDFCSSDGA PTVLGEWLPNG SRPQ G                      XXXXXX    QSANIWLTVGQ RGRPVLRSLYCCGCAYR  TCCYVVLYRPCNPDVLEYLPT+KKNASSG   XXXXXXXXXXXXXXXXXXXXXX   HGENGSPLSRAAD+AAEPPLSSA  TAGASGARDEDGHG AAGVGGGDREV+VGVN
Sbjct:   73 QTERALELLSADPRCRTLNDFCSSDGAPPTVLGEWLPNGHSRPQQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSANIWLTVGQSRGRPVLRSLYCCGCAYR--TCCYVVLYRPCNPDVLEYLPTVKKNASSGDEDXXXXXXXXXXXXXXXXXXXXXXA--HGENGSPLSRAADDAAEPPLSSASPTAGASGARDEDGHGVAAGVGGGDREVNVGVN 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9136.20703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP24_ECTSI2.160e-8179.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9136contigEcto-sp13_S_contig9136:326..3322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1080
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_001680.1
Cds size1080
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.5146-CDS-Ecto-sp13_S_contig9136:325..4411681464185.5146-CDS-Ecto-sp13_S_contig9136:325..441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9136 326..441 +
1681464185.526793-CDS-Ecto-sp13_S_contig9136:890..10941681464185.526793-CDS-Ecto-sp13_S_contig9136:890..1094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9136 891..1094 +
1681464185.5381658-CDS-Ecto-sp13_S_contig9136:1386..17281681464185.5381658-CDS-Ecto-sp13_S_contig9136:1386..1728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9136 1387..1728 +
1681464185.5492847-CDS-Ecto-sp13_S_contig9136:2742..30761681464185.5492847-CDS-Ecto-sp13_S_contig9136:2742..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9136 2743..3076 +
1681464185.5602906-CDS-Ecto-sp13_S_contig9136:3238..33221681464185.5602906-CDS-Ecto-sp13_S_contig9136:3238..3322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9136 3239..3322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9136.20703.1prot_Ecto-sp13_S_contig9136.20703.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9136 326..3322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9136.20703.1

>prot_Ecto-sp13_S_contig9136.20703.1 ID=prot_Ecto-sp13_S_contig9136.20703.1|Name=mRNA_Ecto-sp13_S_contig9136.20703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
KTERALELLSTDPRCRTLNDFCSSDGARPTVLGEWLPNGPSRPQHGGGGT
SGSGASYDCYHNDGAGDAAAAAAARRQSANIWLTVGQRRGRPVLRSLYCC
GCAYRRVTCCYVVLYRPCNPDVLEYLPTIKKNASSGDEDGGGGGGGGGNE
DNKASVAAADNNNPHGENGSPLSRAADNAAEPPLSSAASTAGASGARDED
GHGAAAGVGGGDREVHVGVNSRRSSSRAGASSSSRSSSRQHPSSSLGDTT
TAAAAAAAGGSGGTNGRGSGGLRRGRIGHGTALVSPSARETGNPSGLARD
AASLLMGGGGGGGGEDPTDLDLAIRQARWGGGGVRAWVRFLFRSACLTGG
LGHFRAASK*
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mRNA from alignment at Ecto-sp13_S_contig9136:326..3322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9136.20703.1 ID=mRNA_Ecto-sp13_S_contig9136.20703.1|Name=mRNA_Ecto-sp13_S_contig9136.20703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9136:326..3322+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACCGAGCGCGCACTGGAATTACTGTCTACGGACCCCCGCTGCCGTAC
CCTGAACGACTTCTGCTCGAGTGACGGGGCTCGGCCTACCGTCCTGGGAG
AGTGGCTACCCAATGGGTGAGACGACAGAGGAAGGAGTACCCTGGAGGCG
CAGATATGGCACCCCCGCCTGGAGCGACTTTCAAAGCTCGATTGCTCCAC
AGTCCAGGGGGCGCGGAAAGAGCCGGATACGTCCACGGAAAGCCCTCGAC
GAGGTGCTTTTGTGGTTGGGGAGCAGTCGAGCTTTGGAAGTCGGTCTAGG
AGTGACGCCATCTCTCCCCCTCTTCCGGTATCTGGGCATGGTCGACCTGT
AAAGATGAGATGTCCCCTGGGGTTGTTGTTGTTCGGTGGTTCGGTGCTCA
ATCAGTATTCTCTTCTTCTTCGAACGTACCGCCGTCTGCCGTGCAGCTGC
CGGGCGCTCGTCTTCCGGTCCCCAAAACAAAAAAAATTGTCAACACTTTC
CTGCGTTTTTTCCCGAACCCTTCGTATCGACTGCTCATATTGCGTCGTTC
TCGTGTTCTCATCAGGCCCTCTCGTCCTCAACACGGCGGCGGCGGGACCA
GTGGGAGCGGTGCGAGTTACGACTGCTACCACAACGATGGGGCCGGCGAT
GCGGCGGCTGCGGCGGCCGCACGAAGGCAGAGCGCCAACATCTGGCTCAC
CGTGGGGCAGAGGAGGGGCCGTCCGGTGCTGCGTTCGCTCTACTGCTGCG
GTTGCGCCTACAGGCGAGTGTCGGCCCAGCCACAGCAACAGCAGTGATCG
GCGCCAAAAAATGGATACCGTTGTCAGCATCCCAGAAATGTACGGCTCGC
CATTTGCTTTGCGCGAGCAGATTCCCCCCCTTTTTCGCTTATTTTCGTTT
TCTGCGCGGCCCCATTCCCCCCCCGATTGGCTGTCTCGGTCCTGTGGGAA
CAACGCTCCGTCCTCTCGAGGAAGCGTGATCCAACAGCCAAGGCGTGCGA
AACATTGAGTACGCCCTCGCCCACACGCCCCCGTCCGCCCCCGCCGTGTG
CCTGCCGCCAGGACCTGCTGCTATGTGGTGCTGTACCGGCCGTGCAACCC
CGACGTGCTGGAGTACCTCCCGACGATCAAGAAAAACGCCTCCTCAGGAG
ATGAGGACGGCGGCGGCGGCGGCGGCGGCGGCGGCAACGAAGACAACAAA
GCGAGTGTTGCCGCTGCAGACAACAACAACCCGCATGGGGAGAACGGTAG
CCCGTTATCTCGAGCCGCTGATAATGCTGCGGAGCCCCCCCTCTCTTCGG
CGGCGTCTACGGCGGGTGCGAGCGGCGCCCGTGATGAAGACGGCCACGGA
GCGGCGGCCGGGGTTGGTGGTGGGGACCGTGAGGTTCACGTCGGCGTGAA
CAGGTGAGCCCGTTCGGAGTACAGTAGTAGACGCACAGCAGGGTAGAGTG
CTTCTTTGTTTCTTGTGAGGCTATTAACTCAGGAGTTGTTTCGGAGAACA
TCATAGTAGAGGAACGATTTCGCAAGTGTTAGTTTATCTTCTCTAGGAGA
CACTCTGTCCATTCTCGTCCACGACTCCAGACCTAAACCGCCATAGCGTT
GTCGTAGTTGACGCTGGAGCTCTTTTGCGAATACTACCGAGCATGCTCCT
CCTCTGTCTGGCTCTTTGCTAATGCTCCCGCCACCGCTGCAATTTTCTTT
GCAACGCCATCAGTCATTGAAATATGCTCCGTACCCTCGGGACACCATCA
TGGTACAGGGGGTTCCGTAGCTCAGTGGCAGAGCGTGCGACTGTTAATCG
CGAGGTCGAGGGTTCGATGCCCTCCGGAACCGTCTTTTTTTTGTGTTGCC
TTCATTTTCGGCCGCCCCATGTGGTGTTTGCCAATCGGGGTTGGGTTTTT
GGCGCTTGACAACGACGTTACAAGCCAAGCCGATAGGTCCGTGAGCTCTA
CAACCACATTACAGATCTTTTTTGCCTTCGGTTTTTTTTTGCGGTACTCT
AACCATATTGGTGGTCGAGTTGATAATGTTGTGCGGGGTCGAGAACCGTC
ACTCCGCGCAAATAAATTGCACAACGTTATGTTCAATGGGCCAAGCACCT
TCGAGGTAGATACACAGCAGTGCTAATAACTGCCTCTGGAAGTGAAAACA
CCGGATAAGAAGTCAAGTAATTCGCAGCCGTCATCCGTGTGTAAGGAAGT
AAGCACAAGAAGCGGAACACCCTTCAGCGCAATGCAGCGCACCCTCCATT
CGACTCGACAAATACCTCACGGCGCTTCGCGCATGGTGATGTGAGAGCCT
GGTCCAGTGAGAACCGGCGTGCTCCGTCCCAGCTTTGTAGTGAAGCGAGG
TCAATGGTCTAACAACTACGGCATGCACGACTTTGAGTACACTCCCCACT
TCAACTGCTACCCTCAGCAGACGCAGCTCCAGTCGAGCCGGTGCCAGCAG
TAGCAGCCGGAGCAGCTCGCGACAACACCCTAGTAGCTCCCTCGGTGACA
CCACCACCGCCGCCGCCGCCGCGGCAGCTGGCGGCAGCGGCGGGACCAAC
GGTCGCGGCAGCGGTGGCCTACGGCGGGGACGCATCGGCCACGGCACGGC
CTTGGTGTCGCCGAGCGCACGGGAGACTGGAAACCCGAGCGGCCTCGCTC
GCGACGCGGCGTCCCTGCTGATGGGGGGCGGGGGAGGAGGCGGGGGGGAA
GACCCCACGGATCTGGACCTCGCCATACGACAGGCGAGATGGGGTGGAGG
TGTACTCATTGCCGTGCATACCGTAGTCGTTTGACCGCTGAGCTCGCATC
TCTGCAAAGCCGGGACGGAGCACGCCGGGTTTTCACCGGACCAGGGTATC
ATCTCACCAAGCGCGAAGCGAGAATATTTCGGGGTTGTCTGCTGCCCACG
CCCACGCCCGTAGGGCGTGCGTGCGTGGGTACGATTCCTTTTTAGGAGTG
CATGCTTGACTGGGGGTCTGGGTCACTTTAGGGCGGCCTCGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9136:326..3322+

>mRNA_Ecto-sp13_S_contig9136.20703.1 ID=mRNA_Ecto-sp13_S_contig9136.20703.1|Name=mRNA_Ecto-sp13_S_contig9136.20703.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9136:326..3322+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACCGAGCGCGCACTGGAATTACTGTCTACGGACCCCCGCTGCCGTAC
CCTGAACGACTTCTGCTCGAGTGACGGGGCTCGGCCTACCGTCCTGGGAG
AGTGGCTACCCAATGGGCCCTCTCGTCCTCAACACGGCGGCGGCGGGACC
AGTGGGAGCGGTGCGAGTTACGACTGCTACCACAACGATGGGGCCGGCGA
TGCGGCGGCTGCGGCGGCCGCACGAAGGCAGAGCGCCAACATCTGGCTCA
CCGTGGGGCAGAGGAGGGGCCGTCCGGTGCTGCGTTCGCTCTACTGCTGC
GGTTGCGCCTACAGGCGAGTGACCTGCTGCTATGTGGTGCTGTACCGGCC
GTGCAACCCCGACGTGCTGGAGTACCTCCCGACGATCAAGAAAAACGCCT
CCTCAGGAGATGAGGACGGCGGCGGCGGCGGCGGCGGCGGCGGCAACGAA
GACAACAAAGCGAGTGTTGCCGCTGCAGACAACAACAACCCGCATGGGGA
GAACGGTAGCCCGTTATCTCGAGCCGCTGATAATGCTGCGGAGCCCCCCC
TCTCTTCGGCGGCGTCTACGGCGGGTGCGAGCGGCGCCCGTGATGAAGAC
GGCCACGGAGCGGCGGCCGGGGTTGGTGGTGGGGACCGTGAGGTTCACGT
CGGCGTGAACAGCAGACGCAGCTCCAGTCGAGCCGGTGCCAGCAGTAGCA
GCCGGAGCAGCTCGCGACAACACCCTAGTAGCTCCCTCGGTGACACCACC
ACCGCCGCCGCCGCCGCGGCAGCTGGCGGCAGCGGCGGGACCAACGGTCG
CGGCAGCGGTGGCCTACGGCGGGGACGCATCGGCCACGGCACGGCCTTGG
TGTCGCCGAGCGCACGGGAGACTGGAAACCCGAGCGGCCTCGCTCGCGAC
GCGGCGTCCCTGCTGATGGGGGGCGGGGGAGGAGGCGGGGGGGAAGACCC
CACGGATCTGGACCTCGCCATACGACAGGCGAGATGGGGTGGAGGTGGCG
TGCGTGCGTGGGTACGATTCCTTTTTAGGAGTGCATGCTTGACTGGGGGT
CTGGGTCACTTTAGGGCGGCCTCGAAGTGA
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