mRNA_Ecto-sp13_S_contig9134.20701.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9134.20701.1
Unique NamemRNA_Ecto-sp13_S_contig9134.20701.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 578 bits (1491), Expect = 2.050e-195
Identity = 278/298 (93.29%), Postives = 291/298 (97.65%), Query Frame = 1
Query:    1 SFLVEVADSSTTPTGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLGGNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKELH 894
            SFLVEVADSSTTPTGPT+AGGLFHTCAVLSDLSLKCFGGGSALGV +LEP SSVE GFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLGGNTVLQVAAGQSHTCVLLASG+VACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLG+GRTATHIACGQ+HTCAILDIG+LKCWGYNS+GALGLGDTDNRGE NDTMGD LP VDLGTGHTALAV+GGRHHTCAIL+N+ALKCWGA+NDT+SNYGQLGQGNTD IGIAPGQMGDNLPEVDLGTNRTAVALETGW+HTCVILDNKELH
Sbjct:   21 SFLVEVADSSTTPTGPTVAGGLFHTCAVLSDLSLKCFGGGSALGVTELEPGSSVEHGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLGGNTVLQVAAGQSHTCVLLASGNVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGALKCWGYNSFGALGLGDTDNRGEANDTMGDNLPFVDLGTGHTALAVSGGRHHTCAILDNEALKCWGARNDTSSNYGQLGQGNTDGIGIAPGQMGDNLPEVDLGTNRTAVALETGWHHTCVILDNKELH 318          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 434 bits (1117), Expect = 1.550e-140
Identity = 204/220 (92.73%), Postives = 213/220 (96.82%), Query Frame = 1
Query:  235 MSSNLPEVDLGGNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKELH 894
            MSSNLP+VDLGGNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDT+HRG SSSDMGEGLAVVDLG+GRTATHIACGQ+HTCAILDIGSLKCWG N+YGALGLGDTD+RG+TNDTMGD LPSVDLGTGHTALAVA GRHHTCAILNN+ALKCWGAKNDT +NYGQLGQGNTD IG APGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKELH
Sbjct:    1 MSSNLPQVDLGGNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTQHRGTSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGSLKCWGRNNYGALGLGDTDDRGQTNDTMGDQLPSVDLGTGHTALAVAAGRHHTCAILNNEALKCWGAKNDTMTNYGQLGQGNTDGIGTAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKELH 220          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 280 bits (716), Expect = 3.400e-88
Identity = 139/282 (49.29%), Postives = 179/282 (63.48%), Query Frame = 1
Query:   40 TGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            T   I+ G  HTCA+L + S+KC+G                   + N GQLG G+  + GD   EM   LP + LG G T   ++ G  HTC LL +G V CWG+N YGQLGLGDT  RG+   +MG+ L  + LG+GRTA  I+ G +HTCA+LD GS+KCWGYN+YG LGLGDT +RG+    MGD LP++ LGTG TA A++ G +HTCA+L+N ++KCWGA  +     GQLG G+T      PG+MGD LP V LGT RTA A+  G+YHTC +LDN
Sbjct:  103 TATAISAGFLHTCALLDNGSIKCWG-------------------YNNAGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTATAISVGGIHTCALLDNGSVKCWGYNAYGQLGLGDTSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTAKAISAGGYHTCALLDNGSVKCWGANGN-----GQLGLGDTSYRSDGPGEMGDTLPAVVLGTGRTATAISAGYYHTCALLDN 360          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE)

HSP 1 Score: 255 bits (652), Expect = 1.060e-80
Identity = 127/232 (54.74%), Postives = 157/232 (67.67%), Query Frame = 1
Query:  190 LGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            +G G+  T GD   EM  NLP VDLG G T + +AAG  HTC +L +  V CWG    GQLG GDT +RG++  +MG+ L  VDLG+GRTA  +A G +HTCA+LD G  KCWG+N+   LG GDT+NRG+    MGD LP VDLGTG TA+A+AGG  HTCA+L+N   KCWG      S+ GQLG G+T   G  PG+MGD+LP VDLGT RTAV +  G YH+C +LDN
Sbjct:    1 MGYGDTNTRGDNPGEMGDNLPFVDLGTGRTAVAMAAGAYHTCAILDTARVKCWGRAANGQLGYGDTNNRGDNPGEMGDNLPFVDLGTGRTAVVLAGGHYHTCAVLDNGRAKCWGWNNAAQLGYGDTNNRGDNPGEMGDSLPFVDLGTGRTAVAMAGGELHTCAVLDNGRAKCWGV-----SSLGQLGYGDTSIRGDNPGEMGDSLPYVDLGTGRTAVVITAGTYHSCAVLDN 227          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A0K1E936_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E936_CHOCO)

HSP 1 Score: 263 bits (673), Expect = 1.640e-80
Identity = 135/278 (48.56%), Postives = 175/278 (62.95%), Query Frame = 1
Query:   52 IAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            +A G  HTCA+L D ++KC+G  +A                   G+LG G+    GD   EM ++LP VDLG G   + +AAG SHTC LLA G + CWG N +G+LGLGDT HRG+   +MG+ L  VDLG+GRTAT +  G  H CA+LD GS+KCWG    G LGLGDT +RG  N  MGD LP+VDLGTG TA A++ G  HTC +L++ ++KCWG      ++ GQLG G+    G  PG+MG+ LP V LG  RTA A+ TG+ HTC +LD+
Sbjct:  175 VAPGELHTCALLGDGTVKCWGANTA-------------------GRLGLGDTAHRGDGAGEMGASLPAVDLGTGELAVAIAAGGSHTCALLAGGSIKCWGSNSFGELGLGDTAHRGDEPGEMGDALPAVDLGTGRTATALTVGYRHACALLDDGSVKCWGSGQNGRLGLGDTASRGNGNGQMGDLLPTVDLGTGRTAKAISAGAFHTCVVLDDDSVKCWGV-----NSRGQLGLGDMLLRGDEPGEMGNALPVVALGAGRTAKAITTGYEHTCALLDD 428          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A520PN85_9PROT (Big_5 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A520PN85_9PROT)

HSP 1 Score: 259 bits (663), Expect = 7.750e-79
Identity = 140/285 (49.12%), Postives = 182/285 (63.86%), Query Frame = 1
Query:   31 TTPTGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            T+ T PT AG  +HTC +L + S+KC+G   +                   GQLG G+  + GD  +EM +NL  VDLG G T   +AA +  TC +L +  + CWG N+ GQLG G+T   G++ S+MG+ L  +DLG+GRTAT IA G  H CAILD  S+KCWG NS G LG+G TD+RG+  + MGD LPS+DLGTG TA A+A G  H+CAIL+N A+KCWG KND     GQLG G+T+  G    +MGD+L  VDLGT RTAV++  G+ HTC +LDN
Sbjct:  183 TSTTFPTTAGA-YHTCTILENSSVKCWGKNDS-------------------GQLGLGDTNSRGDGANEMGANLSSVDLGTGRTAKAIAANRVATCAILDNSSIKCWGKNDRGQLGQGNTNSLGDAGSEMGDNLTPIDLGTGRTATAIAGGGWHNCAILDNSSIKCWGINSAGQLGIGSTDDRGDGANEMGDNLPSIDLGTGRTATAIAAGGAHSCAILDNSAVKCWG-KNDA----GQLGLGDTNNRGDGADEMGDDLDAVDLGTGRTAVSITAGYAHTCALLDN 442          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 266 bits (681), Expect = 2.050e-77
Identity = 139/279 (49.82%), Postives = 173/279 (62.01%), Query Frame = 1
Query:   49 TIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            TI+ G  HTCA+L + S+KC+G                   +   GQLG G+    GD   EM   LP V LG G T   ++ G  HTC LL +G V CWG+N+YG LGLGDT  RGN   +MG+ L  V LG+GRTAT I+ G  HTCA+LD GS+KCWG+N +G LGLGDT  RG+    MGD LP+V LGTG TA A++ G  HTCA+L+N ++KCWG      ++YG LG G+T   G  PG+MGD LP V LGT RTA A+  G  HTC +LDN
Sbjct: 1511 TISAGFKHTCALLDNGSVKCWG-------------------YNYDGQLGLGDTSPRGDGPGEMGDTLPAVALGTGRTATAISVGSWHTCALLDNGSVKCWGYNDYGYLGLGDTSRRGNELGEMGDRLPAVALGTGRTATAISAGGWHTCALLDNGSVKCWGWNQFGQLGLGDTSPRGDGPGEMGDTLPAVALGTGRTATAISAGVLHTCALLDNGSVKCWGC-----NDYGYLGLGDTSPRGDGPGEMGDTLPAVALGTGRTATAIFAGVLHTCALLDN 1765          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A6I3AX41_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3AX41_9ACTN)

HSP 1 Score: 254 bits (649), Expect = 8.380e-77
Identity = 135/288 (46.88%), Postives = 174/288 (60.42%), Query Frame = 1
Query:   22 DSSTTPTGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            D  T  T   +  G  HTCA+L + ++KC+G                       G+LG G+ +  GD   EM  NLP VDLG G T   + AG  HTC +L +  V CWG N++G+LGLGDT HRG+++S+MG+ L  VDLG+GR A  ++    H+C +LD  ++KCWGYN    LGLGDTDNRG+ +  MGD LP+VDLGTG TA AV+ G   TC+IL+N  +KCWG      S  GQLG G+T+  G   G+MGDNL  VDLGT RTA A+  G  H C +LDN
Sbjct:  199 DLGTGRTALALTSGRDHTCALLDNHTVKCWG-------------------LNEIGELGYGDTDNRGDNASEMGDNLPTVDLGTGRTAKAINAGMWHTCAILDNDTVKCWGKNDHGELGLGDTSHRGDNASEMGDNLPTVDLGTGRIAKVMSSAGVHSCVLLDNNTIKCWGYNGNADLGLGDTDNRGDNSSEMGDSLPAVDLGTGRTAKAVSSGGGGTCSILDNDTVKCWGY-----SAQGQLGYGDTNNRGDVGGEMGDNLLAVDLGTGRTASAIWYGDLHVCALLDN 462          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 255 bits (651), Expect = 2.180e-76
Identity = 132/288 (45.83%), Postives = 175/288 (60.76%), Query Frame = 1
Query:   22 DSSTTPTGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDN 882
            D  T  T   ++ G  HTCA+L + ++KC+G G +                   G+LG G+ +T+GD   E    LP VDLG G T   +AAGQ +TC LL  G V CWG N  GQLG G+T+  G++  +MG+ L  VDLG+GRTAT I+ G  HTCA+LD G++KCWG  S+G LG GD   RG+    MGD LP ++LGTG TA AV+ G  HTCA+L++  +KCWG         GQLG G+   +G  PG+MGDNLP VDLG+ RTA+A+  G   +C +LD+
Sbjct:  104 DLGTGRTATAVSAGWLHTCALLDNGTVKCWGNGGS-------------------GRLGQGSTDTIGDSTAERGDGLPTVDLGTGRTATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGG-----GFNGQLGTGDVTGLGDNPGEMGDNLPPVDLGSGRTAIAIAAGSRASCAVLDD 367          
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Match: A0A7C1UEQ2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UEQ2_9ACTN)

HSP 1 Score: 252 bits (644), Expect = 3.210e-76
Identity = 141/287 (49.13%), Postives = 168/287 (58.54%), Query Frame = 1
Query:   55 AGGLFHTCAVLSDLSLKCFGGGSALGVADLEPTSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLG-GNTVLQVAAGQSHTCVLLASGDVACWGFNEYGQLGLGDTEHR-GNSSSDMGEGLAVVDLGSGRTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGDYLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYG------QLGQGNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKEL 891
            A G  HTCA+ SD  L+C+G  S                   FGQLG GN  T+GD   EM SNLP +DLG G T + V  G   TC LL  G V CWG N +G LG+G ++   G    +MG+ L  +DLG+GRTA  I+ G  HTCA+LD   LKCWG+N+ G LG GD+  RG   D MGD LP +DLGTG TA+AV+ G   TCAIL+N  LKCWGA  +     G        G G+   IG APG+MGDNLP VDLGT RTAVA+     H C ILDN EL
Sbjct:   50 AAGSGHTCAIDSDAQLRCWGAAS-------------------FGQLGQGNQNTIGDGPGEMGSNLPPIDLGTGRTTVAVGVGSGFTCALLDDGSVKCWGDNPFGILGIGKSQGSVGAHPDEMGDNLPPIDLGTGRTAVAISVGGGHTCALLDNHDLKCWGFNTAGGLGQGDSLIRGGDPDEMGDNLPPIDLGTGRTAVAVSAGGGTTCAILDNGDLKCWGANREGQMGQGYKASSLNFGPGSELHIGDAPGEMGDNLPPVDLGTGRTAVAVSASSRHICAILDNGEL 317          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9134.20701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKP6_ECTSI2.050e-19593.29Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JPT1_9PHAE1.550e-14092.73Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835T669_9CHLO3.400e-8849.29Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A150G0E4_GONPE1.060e-8054.74Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A0K1E936_CHOCO1.640e-8048.56Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A520PN85_9PROT7.750e-7949.12Big_5 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835T094_9CHLO2.050e-7749.82Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A6I3AX41_9ACTN8.380e-7746.88Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A7C1YRK2_9ACTN2.180e-7645.83Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7C1UEQ2_9ACTN3.210e-7649.13Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9134contigEcto-sp13_S_contig9134:188..4840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score579.7
Seed ortholog evalue7.7e-163
Seed eggNOG ortholog2880.D7FKP6
Preferred nameRCCD1
Model size897
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons8
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
Cds size894
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9134.20701.1prot_Ecto-sp13_S_contig9134.20701.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9134 190..4840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.2754834-CDS-Ecto-sp13_S_contig9134:189..2201681464185.2754834-CDS-Ecto-sp13_S_contig9134:189..220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 190..220 -
1681464185.2875142-CDS-Ecto-sp13_S_contig9134:629..7931681464185.2875142-CDS-Ecto-sp13_S_contig9134:629..793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 630..793 -
1681464185.300955-CDS-Ecto-sp13_S_contig9134:1231..13021681464185.300955-CDS-Ecto-sp13_S_contig9134:1231..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 1232..1302 -
1681464185.3193657-CDS-Ecto-sp13_S_contig9134:1792..18751681464185.3193657-CDS-Ecto-sp13_S_contig9134:1792..1875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 1793..1875 -
1681464185.3389928-CDS-Ecto-sp13_S_contig9134:2415..25941681464185.3389928-CDS-Ecto-sp13_S_contig9134:2415..2594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 2416..2594 -
1681464185.3892398-CDS-Ecto-sp13_S_contig9134:3251..33921681464185.3892398-CDS-Ecto-sp13_S_contig9134:3251..3392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 3252..3392 -
1681464185.407624-CDS-Ecto-sp13_S_contig9134:3910..40611681464185.407624-CDS-Ecto-sp13_S_contig9134:3910..4061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 3911..4061 -
1681464185.4283621-CDS-Ecto-sp13_S_contig9134:4766..48401681464185.4283621-CDS-Ecto-sp13_S_contig9134:4766..4840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9134 4767..4840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9134.20701.1

>prot_Ecto-sp13_S_contig9134.20701.1 ID=prot_Ecto-sp13_S_contig9134.20701.1|Name=mRNA_Ecto-sp13_S_contig9134.20701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp
SFLVEVADSSTTPTGPTIAGGLFHTCAVLSDLSLKCFGGGSALGVADLEP
TSSVEDGFGNFGQLGTGNNETLGDEEDEMSSNLPEVDLGGNTVLQVAAGQ
SHTCVLLASGDVACWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGSG
RTATHIACGQHHTCAILDIGSLKCWGYNSYGALGLGDTDNRGETNDTMGD
YLPSVDLGTGHTALAVAGGRHHTCAILNNQALKCWGAKNDTTSNYGQLGQ
GNTDAIGIAPGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNKELH
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mRNA from alignment at Ecto-sp13_S_contig9134:188..4840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9134.20701.1 ID=mRNA_Ecto-sp13_S_contig9134.20701.1|Name=mRNA_Ecto-sp13_S_contig9134.20701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9134:188..4840- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTTCTGGTGGAGGTGGCCGATTCGTCAACGACGCCAACCGGACCTAC CATCGCCGGAGGGCTGTTCCACACGTGAGAAGACGTGTAGGGGTCATTTT CGAGGATGGGCGGCGATTTTTGGGCAACGTGGCTCCCAGCGTCTGGGGGC CGGTTCCCTTCCCTCTTCTTTCATGTCTGGCAAATGGCGGTGACGTGCTG AGGATACGTCCCTTCGTGAATTGGCAGGGGGATCGATGAAAATAGCGTTT CACACACGTACTGCTGAAGGGCCAATGAGAGAGCCCGTGAACCTGTACGT AAACAGTTGATAGTTTGCTCTTGAGAGGGGTGAAATCATCGTGGTGGACG TTTAGTCGTTCTTTCTCTTCGTCTCTCTTGCGCCTTTTGTGAGGAATGAC CCTACGCTGTAACCGTCACTCCGCGCGGCGTGCGCAGAATACCACGTGCA TAATGTTCAGATGGATTGTTTGACGCGTGTTGCCATTCAATCATGGACAA CGGGCGCACAAACGCCCCCCCCCCCCCTACCGCTAGAGTCCTTTGACTTG GAAAGCGCGCGGAGGCGTTTTGGTTTTTCATTTTTCCCGCTGTGAGACCG ACGTCTTCCCGCTCGTTGGCGCGGTCATGCTACATGCACTCCCCGAACCT GAAAAATAATTAATTTAAATCACACCCCATGTCTAGACTATACCTATGTA CTCCCCAAACCCGAAAAACAAAAAATTAATGAAACACCCCCATAAATTCA AGAAACACACACGTGCGCGCGCGAATCAGGTGCGCGGTGTTGTCGGACCT ATCGCTCAAGTGTTTCGGGGGAGGCAGCGCCCTCGGAGTGGCAGACCTGG AACCGACATCGTCGGTGGAAGATGGCTTCGGAAATTTCGGCCAACTGGGC ACCGGAAACAATGAAACCCTCGGGGATGAGGTGAGGGCGGCGGCCGTGAC CGTTTCCCGAGATGAATGCCGGGGAGTAGTAGATATACGTTCATACCATC CAGTGGTAATTTCACCGCGGCAGGCGTTCGGTCGGAACCGCTCGGGGCGC GCTTCCGTTGTTTTTGTCCCACACCGATGTACCATGCAGGCGCTTCCCCA GGCCGTTCCGCCCAAACGCAGAGAAGAACGGTCAGCGTGCGTAAACGTAC CGTTTGGCTACACGGAGCTTGCTCTATTTATGCCGTCGAACTGCAACAGG ACGGGAACACCACAAGATGATGCTTCGGGACTCCCCCAGAAAGGATCGAC GCCCAGCCCTCGTTGACGATTCACCCGAGGGGCACAGTTTATCTACCACC CCGCGCGCTCTTGCCAGCGTACAGGCAAGACAAAGTTTCCTGCCATCTGC CGCCGTTCTCTTGACAGCCAGCACTGCTGTGCTTGCCTTTTCGGAATGTT GGTTGTCTCTCGCGCGCGTTTCGTCGCTGCTTGCTTGCTTGTCTTCAGGA GGACGAAATGAGTTCCAATCTGCCGGAGGTTGATCTCGGAGGTAACACGG TGCTGCAGGTGGCGGCCGGACAGAGCCACACGTGCGTCCTGCTGGCCTCG GGAGACGTGGCGTGCTGGGGTTTCAATGAGTATGGCCAGGCAAGCAAGCA ATAGGGGTTCGGGTCGGTAGATGTAGGTAGCCTTGTTCGGGCGTAGTGCC GTACTACGTTAGCTTGGAGCTATAACAGTGCGCTGCCACCTTGCAGTATC CGAAATCGCTTGTTTTATCCGTGTTAAGACATGTGCGGTTGAAATACAAT TCGAAGTACGATTTTGGGACATTCTCGAGCCGTCGTCGGATACGCACGCC ACGGCGCCCTTTTAGGCGATGGAGCACGGTTCTCATGCACGATACCACGC CACGCCGATCGGACAGAGATGGGTATTGACCCATGCTTGACTATGTACGT CGCATCGCCGGGACATTCGGCTCGCGATGCTGTTGTCGGTCGCCGCCACT GTGGCAAACCTGCTGCCGCACGTGCGGCGAGTCGTTTCGCGTCTGGCCGC TCCGTGTTTCAAGCTATTGGACACGGCACCACCCGTTCCCTCCCGTGCGC TCTTTCATTCAAATCGTGCTTTGAAATCGGTGAAAAGATCAACGCATGTC CCAACACGACCCACGTCTCGCTTTTGTCTTTGCCTTTGGGCGTTGCCCTG GTTAGCCTATGTACTTTTTCCCCCCTTTGTCTACTCTGACGTTCTGCCTG GTCGCGTGTCTGTCATTGGGTGCCGCCGTTGTCGTCGACCGCACAGCTCG GTCTTGGGGACACCGAACACAGAGGAAACTCTTCCTCCGACATGGGGGAG GGTCTGGCTGTCGTAGACCTGGGGTCGGGTAGAACGGCGACCCACATCGC TTGCGGACAGCACCACACGTGCGCCATTCTCGACATCGGGTCCCTGAAGT GCTGGGGGTACAACTCCTACGGCGCGTGAGAACTACATTACTTGCATTGC GACTGACCGAGGGGGGGGGGGAGTGATGATGGGACCTGCGTTCATTTCTC TCGGCTGTTACATCGTTCTGGCAGCCTGTCGGACTACTGCTTTGCTGCTA TTATAGCTTGGGTTTTCTTTGCCTCTCTTTCGTTGCCAGGCCCCATTTAC TGCCCTCGCTGGCAGGTTGAAGCGTAGCTTGGCCTGCCGTCTTGCTTCTC GAACACGTGCGTCGCCACGCGGCACATGCATGATTTATGTTTCCCCCACG GTAGATGCCTTACTCTTGTTTGCGCGTTAACGGTCGTGTGATTCCTTCCA CCAAGCGCACGCAAGCACTGGCACCTTCCATGGCAGGACGAGATTGCGTG AGTTTGCGAAGCACTCGTCGCGGTGATGGACTGGTCCGTTCGAAGGGCCC GATACAGCTGTCTGTCTCTGTCGACCGCGCAAAAGATGCAAGAGTAGTCA GGTGGTTCGTCCCTGACATTGGCCTGGCCTTGTCTCGTGCGACGTGCTCT TGACTTCTTGCTCAGGTTGGGGCTGGGAGACACAGACAATCGGGGAGAAA CGAACGATACGATGGGTGACTACCTGCCGTCTGTCGACTTGGGTACTGGT GAGACAACAGGAGCTATAATAGTAGAGCAAGGCGATTTTTCCGCGCGGGC CAAGTAGGAAGACACGTAGGCATACATGGGTTCAAATCTGCGTTTCCATC AATCGGACGGGGAGATTTTTTTACTCTTCTCTCCTTCGTTTCACCACGGC AAGAAAAACAAGTCGAAAAAGCCGGCGCTCTCGTCGAGATACGTACTGTG CATTGTCAACGTACTGTATCGCGTGATGTTGATAACAACCCGAGCGGACC TTTGACATCGGTGTGTGTAAGCTACCGTTCTTTGGGTGGTGCAAAGCGAG GTCAGGTGTGTACCGCGACCAAGGGTACGAAGATGCTTTCCAACACATAT ATCACATCACCCATCAGCTACCTCGGCTAGAACTCATCAAACATGAACGT CAACCTCGGTGGCGTCTTCTGGCCGCCCCTGCTGCATGCTCCTGTCCATC GGTGGCACCTTCCGTGGCACCGGGGGACGGTTGGGCAGGACACACGGCCT TGGCCGTGGCGGGAGGCAGGCATCACACTTGCGCTATCTTGAACAATCAG GCGTTGAAGGTGAGCGAGCGTCGGATATAGGTTGAGACTGACTGACTTGA TTGCTGTGAAGCGCTTGTACAACGCGCCGGGACGTGAGTGCGCCCAAGGA CGTTGGGCCGTGGCTCTGAGGGTTATCAGAAAAACAATCATGAAGCAAAA GGGATTTTCATATGATCAATCTCGCCTTGGAGATGCCTTTCAAAAATTTA GGGTACAACCCCCATGTCTCTCGTGTATGGTGGTTACATTTTTTGTTCTC GCGACAACCCCCAAGTGGGGCTTCAGAATACTCACCCAACTCCGGCAACC CATGAAGGCCATTACGCCGAGATATGCTGAACGCAAACTTGCCTGCACCA GCTAGCTTGTGTATTCCCGACGTAACACACGTATCTCCACCAACATCCTC TTTGGTGCGCCTCCTCGATCGATCGTGTCATGACGTCATGGCAACAGTGC TGGGGGGCGAAGAACGATACCACGTCCAACTACGGCCAGCTGGGGCAAGG CAACACTGACGCTATCGGCATCGCGCCAGGCCAGATGGGAGACAATCTAC CCGAGGTCGACCTTGGGACAAACCGGACCGCTGTGGCTTTGGAGACTGGC TGGTACCACACGTGAGCGTATCGAGGCTGCGGAGGCACTGACTGTGAATG AATCTACTGTAATAATATCTACATAGACATGAGTGTGTTTTTTTGTACTG AAGCTTTCTGAAGCTGAGAACGCTGTGGTTTCGTTCTGGACGCTTTGCTG CGGCTTCGCCACGAACCCATTCCCGACACCGTTTAGTGTTCGAGGGTCAA AAGCCGTGAGTCGCCTCCGCATCACACGCGACACACACGCTTGAACTTAG CGTCGTGTTGTGTTGTTTCCCGCAGTGCTTTTCTCGCGTCCACGGGCGAG ACACCTCGCATGGGACTCGTTCGCCACTGCTCAGCTCCAAGAGTGGAGAA ACGTGCACTTGTTCTTGAAAATAATGTGTTGCTTTTGCCGAATCGCGCCC CCCCTCTCTTGCACGGAAAGGTGCGTGATCCTGGACAACAAGGAGCTGCA CTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9134:188..4840-

>mRNA_Ecto-sp13_S_contig9134.20701.1 ID=mRNA_Ecto-sp13_S_contig9134.20701.1|Name=mRNA_Ecto-sp13_S_contig9134.20701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9134:188..4840- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTTCTGGTGGAGGTGGCCGATTCGTCAACGACGCCAACCGGACCTAC
CATCGCCGGAGGGCTGTTCCACACGTGCGCGGTGTTGTCGGACCTATCGC
TCAAGTGTTTCGGGGGAGGCAGCGCCCTCGGAGTGGCAGACCTGGAACCG
ACATCGTCGGTGGAAGATGGCTTCGGAAATTTCGGCCAACTGGGCACCGG
AAACAATGAAACCCTCGGGGATGAGGAGGACGAAATGAGTTCCAATCTGC
CGGAGGTTGATCTCGGAGGTAACACGGTGCTGCAGGTGGCGGCCGGACAG
AGCCACACGTGCGTCCTGCTGGCCTCGGGAGACGTGGCGTGCTGGGGTTT
CAATGAGTATGGCCAGCTCGGTCTTGGGGACACCGAACACAGAGGAAACT
CTTCCTCCGACATGGGGGAGGGTCTGGCTGTCGTAGACCTGGGGTCGGGT
AGAACGGCGACCCACATCGCTTGCGGACAGCACCACACGTGCGCCATTCT
CGACATCGGGTCCCTGAAGTGCTGGGGGTACAACTCCTACGGCGCGTTGG
GGCTGGGAGACACAGACAATCGGGGAGAAACGAACGATACGATGGGTGAC
TACCTGCCGTCTGTCGACTTGGGTACTGGACACACGGCCTTGGCCGTGGC
GGGAGGCAGGCATCACACTTGCGCTATCTTGAACAATCAGGCGTTGAAGT
GCTGGGGGGCGAAGAACGATACCACGTCCAACTACGGCCAGCTGGGGCAA
GGCAACACTGACGCTATCGGCATCGCGCCAGGCCAGATGGGAGACAATCT
ACCCGAGGTCGACCTTGGGACAAACCGGACCGCTGTGGCTTTGGAGACTG
GCTGGTACCACACGTGCGTGATCCTGGACAACAAGGAGCTGCAC
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