mRNA_Ecto-sp13_S_contig91324.20700.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91324.20700.1
Unique NamemRNA_Ecto-sp13_S_contig91324.20700.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 6.990e-60
Identity = 109/117 (93.16%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVARVPRNEKEARFPGL 351
            MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSK ASAGRG      KKATPKA+VARVPRNEKEARFPGL
Sbjct:    1 MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKAASAGRGGVGGGAKKATPKASVARVPRNEKEARFPGL 117
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 2.360e-57
Identity = 108/117 (92.31%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVARVPRNEKEARFPGL 351
            MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFP+PAAFRQALSENGAEFPDSLADNLLRIIGAMKPSK ASAGR       KKATPKAAVARVPRNEKEARFPGL
Sbjct:    1 MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPDPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKGASAGRAGGGGA-KKATPKAAVARVPRNEKEARFPGL 116
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.660e-36
Identity = 78/117 (66.67%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   10 SSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVA---RVPRNEKEARFPGL 351
            S +DELQRL+L+SKVCTELDNHLGLSDRTLAEFIIHLA EFPEPAAFR AL+ENGAEFP +L DNLLRII  M        G G       +A P  A +   RVPRNE EA+FPGL
Sbjct:    2 SELDELQRLALISKVCTELDNHLGLSDRTLAEFIIHLAAEFPEPAAFRSALAENGAEFPGALCDNLLRIIKLMS-------GDGGGAGSAAEAQPAVAASLQPRVPRNETEAKFPGL 111
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A7S2DM33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM33_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.380e-30
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:   16 IDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVARVPRNEKEARFPGL 351
            +DEL  L L+SKVC ELDNHLGLSD+TLAEFI+H+A E      F + L+ENGAEFP +LA+++ R+I AMKPSK +S+G        KK    A++  VPR+E++ +FPGL
Sbjct:    1 MDELVHLQLISKVCNELDNHLGLSDKTLAEFIVHIAGEVKSSTDFNEKLAENGAEFPSALAESIWRLIQAMKPSKASSSG-------IKKDAEPASI--VPRDERDIQFPGL 103
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: W7TCI3_9STRA (Atp-dependent rna helicase dhx8 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCI3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.010e-27
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:   10 SSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVARVPRNEKEARFPGL 351
            +++D+LQ LSLVSK+CTELD+HLGL+D+TLAEFIIHLA+   +  +FR AL ENGAEFP +  D L  +I AM+P +V   GR            +    R  RN KEA FPGL
Sbjct:    2 AALDKLQELSLVSKICTELDSHLGLADKTLAEFIIHLAESHGDAKSFRTALDENGAEFPPTFCDKLFNLIKAMRPHRV---GRKKTYSNGDGGEHEHVEPREARNAKEAAFPGL 112
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A7S2RRS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRS8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.900e-25
Identity = 61/113 (53.98%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:   13 SIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGXXXXXXKKATPKAAVARVPRNEKEARFPGL 351
            ++++L  L LVSKVCTELDNHLGLSD+TLAEFIIHLAD       F   LS NGAEFP +LA++L R+I  MKP     +G G  XXXX      A    VPR++++  FPGL
Sbjct:    1 TMEDLLHLQLVSKVCTELDNHLGLSDKTLAEFIIHLADGVSSATGFEAKLSANGAEFPTALAESLFRLIQQMKPKAGGKSGAGAGXXXXXXXAGPA----VPRDQRDVEFPGL 109
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: UPI001D0027B0 (ATP-dependent RNA helicase DHX8-like isoform X1 n=2 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D0027B0)

HSP 1 Score: 105 bits (262), Expect = 5.000e-24
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSK 240
            +++  I++L+ LSLVSK+CTEL+NHLGL+D+ LAEFIIHLA E P P  F+QAL ENG E  DS  DNLLRII  MKPSK
Sbjct:    2 VLNDDIEKLEYLSLVSKICTELENHLGLNDKDLAEFIIHLATENPTPNGFKQALRENGGELSDSFMDNLLRIIQHMKPSK 81
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A8J5R9Z7_9HYME (Uncharacterized protein n=2 Tax=Cotesia TaxID=32390 RepID=A0A8J5R9Z7_9HYME)

HSP 1 Score: 103 bits (258), Expect = 1.730e-23
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    4 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVAS 249
            ++ +I++L+ LSLVSK+CTEL+NHLGL D+ LAEFIIHLA E P P  F+QAL ++G E  DS  DNLLRII  MKPSK+++
Sbjct:    3 LNDAIEKLEYLSLVSKICTELENHLGLDDKDLAEFIIHLATENPTPDGFKQALRDSGGELSDSFMDNLLRIIQHMKPSKISN 84
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: T1GM52_MEGSC (RNA helicase n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GM52_MEGSC)

HSP 1 Score: 102 bits (253), Expect = 8.170e-23
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:   16 IDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPS 237
            + +L+ LSLVSK+CTELDNHLG++D+ LAEFIIHLADE P    FR+AL  NGAEFPDSL +NLLRII  M+ S
Sbjct:    4 LKQLEYLSLVSKICTELDNHLGINDKDLAEFIIHLADENPALTDFRRALESNGAEFPDSLTENLLRIIKLMRSS 77
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BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Match: A0A813C684_9DINO (Prp22 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C684_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 1.170e-22
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 VSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAFRQALSENGAEFPDSLADNLLRIIGAMKPSKVASA 252
            +SS ++ LQ LSLVSKVC ELD+H+GLSD TLAEFIIHLA E   P +F  A+ ENGA+F DS A +LL  I +M PSK  SA
Sbjct:    1 MSSELERLQHLSLVSKVCQELDDHIGLSDATLAEFIIHLAKEHSTPESFANAVRENGADFGDSFAASLLETIHSMLPSKQGSA 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91324.20700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEZ0_9PHAE6.990e-6093.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN25_ECTSI2.360e-5792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV72_9STRA3.660e-3666.67Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A7S2DM33_9STRA4.380e-3053.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TCI3_9STRA2.010e-2751.75Atp-dependent rna helicase dhx8 (Fragment) n=1 Tax... [more]
A0A7S2RRS8_9STRA2.900e-2553.98Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI001D0027B05.000e-2465.00ATP-dependent RNA helicase DHX8-like isoform X1 n=... [more]
A0A8J5R9Z7_9HYME1.730e-2360.98Uncharacterized protein n=2 Tax=Cotesia TaxID=3239... [more]
T1GM52_MEGSC8.170e-2367.57RNA helicase n=1 Tax=Megaselia scalaris TaxID=3616... [more]
A0A813C684_9DINO1.170e-2261.45Prp22 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91324contigEcto-sp13_S_contig91324:122..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score201.8
Seed ortholog evalue1.7e-49
Seed eggNOG ortholog2880.D8LN25
Preferred nameDHX8
Model size351
KEGG koko:K12818
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
Cds size351
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.232007-CDS-Ecto-sp13_S_contig91324:121..4721681464185.232007-CDS-Ecto-sp13_S_contig91324:121..472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91324 122..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91324.20700.1prot_Ecto-sp13_S_contig91324.20700.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91324 122..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91324.20700.1

>prot_Ecto-sp13_S_contig91324.20700.1 ID=prot_Ecto-sp13_S_contig91324.20700.1|Name=mRNA_Ecto-sp13_S_contig91324.20700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MVSSSIDELQRLSLVSKVCTELDNHLGLSDRTLAEFIIHLADEFPEPAAF
RQALSENGAEFPDSLADNLLRIIGAMKPSKVASAGRGGGGGAAKKATPKA
AVARVPRNEKEARFPGL
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mRNA from alignment at Ecto-sp13_S_contig91324:122..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91324.20700.1 ID=mRNA_Ecto-sp13_S_contig91324.20700.1|Name=mRNA_Ecto-sp13_S_contig91324.20700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91324:122..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAGCAGCAGCATAGACGAGCTCCAGCGGCTCTCCCTGGTGTCCAA
GGTCTGCACTGAGCTCGACAACCACTTGGGCCTGAGCGACCGCACGCTCG
CCGAGTTCATCATCCACCTGGCCGATGAGTTCCCGGAGCCGGCGGCGTTC
CGCCAGGCCCTGTCGGAGAACGGAGCCGAGTTCCCGGACTCCCTCGCCGA
CAACCTCCTCCGGATCATCGGCGCCATGAAGCCCTCCAAGGTGGCTTCGG
CCGGGCGGGGGGGGGGGGGGGGGGCTGCGAAGAAGGCCACGCCTAAGGCT
GCTGTGGCCAGGGTGCCGAGGAACGAGAAGGAGGCGCGGTTTCCGGGGCT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91324:122..472+

>mRNA_Ecto-sp13_S_contig91324.20700.1 ID=mRNA_Ecto-sp13_S_contig91324.20700.1|Name=mRNA_Ecto-sp13_S_contig91324.20700.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91324:122..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAGCAGCAGCATAGACGAGCTCCAGCGGCTCTCCCTGGTGTCCAA
GGTCTGCACTGAGCTCGACAACCACTTGGGCCTGAGCGACCGCACGCTCG
CCGAGTTCATCATCCACCTGGCCGATGAGTTCCCGGAGCCGGCGGCGTTC
CGCCAGGCCCTGTCGGAGAACGGAGCCGAGTTCCCGGACTCCCTCGCCGA
CAACCTCCTCCGGATCATCGGCGCCATGAAGCCCTCCAAGGTGGCTTCGG
CCGGGCGGGGGGGGGGGGGGGGGGCTGCGAAGAAGGCCACGCCTAAGGCT
GCTGTGGCCAGGGTGCCGAGGAACGAGAAGGAGGCGCGGTTTCCGGGGCT
G
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