mRNA_Ecto-sp13_S_contig91321.20699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91321.20699.1
Unique NamemRNA_Ecto-sp13_S_contig91321.20699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.210e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    1 GGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 129
            GGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS
Sbjct:  366 GGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 408          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A8K0WV57_9HYPO (Uncharacterized protein n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0WV57_9HYPO)

HSP 1 Score: 55.5 bits (132), Expect = 5.170e-8
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   22 VAFKRCSQCHAVGYCSRECQKAGWKKHRKAC 114
            V+ KRC++CH   YCSRECQKA WK+HR+ C
Sbjct:   15 VSLKRCAKCHTTPYCSRECQKADWKQHRRTC 45          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A319E0C8_ASPSB (MYND-type zinc finger protein samB n=1 Tax=Aspergillus sclerotiicarbonarius (strain CBS 121057 / IBT 28362) TaxID=1448318 RepID=A0A319E0C8_ASPSB)

HSP 1 Score: 55.1 bits (131), Expect = 9.930e-8
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   10 GAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACS 117
            G+ASV  KRC++C    YCSR+CQKA WKKH++ CS
Sbjct:   17 GSASVPLKRCAKCKTQWYCSRDCQKADWKKHKQICS 52          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: S8AH82_DACHA (MYND-type zinc finger protein samB n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AH82_DACHA)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-7
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:   16 ASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 129
            AS   K C++C +V YCSR+CQKA WK H+K C  VN+
Sbjct:   15 ASEDLKHCARCKSVNYCSRDCQKANWKHHKKVCGKVNT 52          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A0F9X4H5_TRIHA (MYND-type zinc finger protein samB n=4 Tax=Trichoderma TaxID=5543 RepID=A0A0F9X4H5_TRIHA)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-7
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:   10 GAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 129
            G   V+ KRC++CH   YCSR+CQKA WK H+K C+  +S
Sbjct:   11 GPPEVSLKRCAKCHTTPYCSRDCQKADWKAHKKICAKNHS 50          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A0N0RZN0_9EURO (MYND-type zinc finger protein samB n=1 Tax=Penicillium nordicum TaxID=229535 RepID=A0A0N0RZN0_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 1.960e-7
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1
Query:   25 AFKRCSQCHAVGYCSRECQKAGWKKHRKACSA 120
            A + CS+CH   YCSR+CQKA WKKH+K C A
Sbjct:  218 ALRNCSRCHKAKYCSRDCQKADWKKHKKVCKA 249          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A8K0UZV9_9AGAM (Uncharacterized protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0UZV9_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-7
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:   28 FKRCSQCHAVGYCSRECQKAGWKKHRKACSAV 123
             KRC  CH V YCSRECQKA W++H++ C A+
Sbjct:  220 LKRCGTCHQVSYCSRECQKADWRRHKQFCQAI 251          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A7S3V4I3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4I3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-7
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1
Query:   28 FKRCSQCHAVGYCSRECQKAGWKKHRKACSAVN 126
            FKRC+QCHAV YCSR CQK  WK H+  C+ ++
Sbjct:   61 FKRCAQCHAVCYCSRNCQKMDWKNHKMDCADID 93          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: H6BUN6_EXODN (MYND-type zinc finger protein samB n=1 Tax=Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) TaxID=858893 RepID=H6BUN6_EXODN)

HSP 1 Score: 53.5 bits (127), Expect = 3.740e-7
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   28 FKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 129
             KRCS+CH + YCSR+CQ A WK+H+K C+  N+
Sbjct:   27 LKRCSKCHIIQYCSRQCQAADWKQHKKPCNKNNA 60          
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Match: A0A1W5D628_9LECA (MYND-type zinc finger protein samB n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5D628_9LECA)

HSP 1 Score: 53.1 bits (126), Expect = 4.940e-7
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1
Query:   19 SVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAV 123
            S+  KRC++CH   YCSR+CQKA WK H+K C+  
Sbjct:   52 SIPLKRCAKCHTGLYCSRDCQKADWKSHKKTCAVT 86          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91321.20699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNJ8_9PHAE4.210e-22100.00MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A8K0WV57_9HYPO5.170e-864.52Uncharacterized protein n=1 Tax=Stachybotrys elega... [more]
A0A319E0C8_ASPSB9.930e-861.11MYND-type zinc finger protein samB n=1 Tax=Aspergi... [more]
S8AH82_DACHA1.120e-755.26MYND-type zinc finger protein samB n=1 Tax=Dactyle... [more]
A0A0F9X4H5_TRIHA1.260e-752.50MYND-type zinc finger protein samB n=4 Tax=Trichod... [more]
A0A0N0RZN0_9EURO1.960e-762.50MYND-type zinc finger protein samB n=1 Tax=Penicil... [more]
A0A8K0UZV9_9AGAM2.390e-759.38Uncharacterized protein n=1 Tax=Cristinia sonorae ... [more]
A0A7S3V4I3_9STRA2.490e-760.61Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
H6BUN6_EXODN3.740e-755.88MYND-type zinc finger protein samB n=1 Tax=Exophia... [more]
A0A1W5D628_9LECA4.940e-754.29MYND-type zinc finger protein samB n=2 Tax=Lasalli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91321contigEcto-sp13_S_contig91321:14..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464185.1990173-CDS-Ecto-sp13_S_contig91321:13..1451681464185.1990173-CDS-Ecto-sp13_S_contig91321:13..145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91321 14..145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91321.20699.1prot_Ecto-sp13_S_contig91321.20699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91321 14..145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91321.20699.1

>prot_Ecto-sp13_S_contig91321.20699.1 ID=prot_Ecto-sp13_S_contig91321.20699.1|Name=mRNA_Ecto-sp13_S_contig91321.20699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
GGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS*
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mRNA from alignment at Ecto-sp13_S_contig91321:14..145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91321.20699.1 ID=mRNA_Ecto-sp13_S_contig91321.20699.1|Name=mRNA_Ecto-sp13_S_contig91321.20699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91321:14..145+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGATGGCGCCGCCAGTGTGGCATTCAAGCGGTGTTCGCAGTGCCA CGCCGTAGGTTACTGCTCCCGGGAATGCCAGAAGGCGGGCTGGAAGAAAC ACCGGAAGGCTTGCTCGGCGGTGAACTCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91321:14..145+

>mRNA_Ecto-sp13_S_contig91321.20699.1 ID=mRNA_Ecto-sp13_S_contig91321.20699.1|Name=mRNA_Ecto-sp13_S_contig91321.20699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91321:14..145+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGATGGCGCCGCCAGTGTGGCATTCAAGCGGTGTTCGCAGTGCCA
CGCCGTAGGTTACTGCTCCCGGGAATGCCAGAAGGCGGGCTGGAAGAAAC
ACCGGAAGGCTTGCTCGGCGGTGAACTCTTAA
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