mRNA_Ecto-sp13_S_contig91303.20697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91303.20697.1
Unique NamemRNA_Ecto-sp13_S_contig91303.20697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.470e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN
Sbjct:  157 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: A0A7S1ADW5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ADW5_NOCSC)

HSP 1 Score: 115 bits (289), Expect = 6.340e-30
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE  +++KMEVGIEDCLHIEFEYDKS YHL+DV++GK+YFLLVRIKIKHME+ IIRRETAGTGSN
Sbjct:  171 PEVNNTIKMEVGIEDCLHIEFEYDKSKYHLKDVIVGKVYFLLVRIKIKHMELNIIRRETAGTGSN 235
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: W7TAJ9_9STRA (Vacuolar protein sorting-associated protein 26 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAJ9_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.400e-30
Identity = 53/65 (81.54%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE+  S+KMEVGIEDCLHIEFEYDK  YHL+DV++GKIYFLLVRIKIKHME+AIIRRE+AGTG+N
Sbjct:  159 PESHSSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLLVRIKIKHMELAIIRRESAGTGAN 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: A0A6S7K6Z2_PARCT (Vacuolar sorting-associated 26B-like (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K6Z2_PARCT)

HSP 1 Score: 111 bits (278), Expect = 6.050e-29
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET GTG N
Sbjct:  156 PEINTSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEVAIIKRETTGTGPN 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: A0A7M5WYV7_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WYV7_9CNID)

HSP 1 Score: 113 bits (282), Expect = 6.860e-29
Identity = 52/65 (80.00%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKI+HME+AII+RETAGTG N
Sbjct:  156 PEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIRHMELAIIKRETAGTGPN 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: UPI0009E20A0D (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E20A0D)

HSP 1 Score: 110 bits (276), Expect = 8.120e-29
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTG 189
            PE  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET GTG
Sbjct:  156 PEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELAIIKRETTGTG 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: A0A7J6AIX0_AMEME (Uncharacterized protein n=2 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6AIX0_AMEME)

HSP 1 Score: 109 bits (273), Expect = 9.650e-29
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+ II+RET GTG N
Sbjct:   58 PELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPN 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: A0A822FNC6_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822FNC6_9BILA)

HSP 1 Score: 109 bits (272), Expect = 9.730e-29
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII++E  GTG N
Sbjct:   81 PEINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKKENTGTGPN 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: UPI00094E3108 (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E3108)

HSP 1 Score: 107 bits (268), Expect = 1.020e-28
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTG 189
            PE   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+ II+RET GTG
Sbjct:   39 PELNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Match: H2ZZH3_LATCH (VPS26, retromer complex component B n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZZH3_LATCH)

HSP 1 Score: 109 bits (273), Expect = 1.040e-28
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 PEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSN 195
            PE   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+ II+RET GTG N
Sbjct:   86 PEINSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPN 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91303.20697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI2.470e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1ADW5_NOCSC6.340e-3081.54Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
W7TAJ9_9STRA9.400e-3081.54Vacuolar protein sorting-associated protein 26 n=2... [more]
A0A6S7K6Z2_PARCT6.050e-2980.00Vacuolar sorting-associated 26B-like (Fragment) n=... [more]
A0A7M5WYV7_9CNID6.860e-2980.00Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
UPI0009E20A0D8.120e-2980.95vacuolar protein sorting-associated protein 26B-li... [more]
A0A7J6AIX0_AMEME9.650e-2978.46Uncharacterized protein n=2 Tax=Ameiurus melas Tax... [more]
A0A822FNC6_9BILA9.730e-2976.92Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
UPI00094E31081.020e-2879.37vacuolar protein sorting-associated protein 26B-li... [more]
H2ZZH3_LATCH1.040e-2878.46VPS26, retromer complex component B n=1 Tax=Latime... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91303contigEcto-sp13_S_contig91303:6..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score117.1
Seed ortholog evalue2.7e-24
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
Model size195
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
Exons2
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
EC6.1.1.12
Cds size171
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.9419448-CDS-Ecto-sp13_S_contig91303:5..891681464184.9419448-CDS-Ecto-sp13_S_contig91303:5..89Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91303 6..89 -
1681464184.9601572-CDS-Ecto-sp13_S_contig91303:367..4541681464184.9601572-CDS-Ecto-sp13_S_contig91303:367..454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91303 368..454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.970774-UTR-Ecto-sp13_S_contig91303:454..4781681464184.970774-UTR-Ecto-sp13_S_contig91303:454..478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig91303 455..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91303.20697.1prot_Ecto-sp13_S_contig91303.20697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91303 6..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91303.20697.1

>prot_Ecto-sp13_S_contig91303.20697.1 ID=prot_Ecto-sp13_S_contig91303.20697.1|Name=mRNA_Ecto-sp13_S_contig91303.20697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRE
TAGTGSN
back to top

mRNA from alignment at Ecto-sp13_S_contig91303:6..478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91303.20697.1 ID=mRNA_Ecto-sp13_S_contig91303.20697.1|Name=mRNA_Ecto-sp13_S_contig91303.20697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91303:6..478- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGAGGCGTTGGATTCGCTCAAGATGGAAGTGGGTATCGAGGACTGCCT
TCACATCGAGTTCGAGTACGACAAATCAGCCTACCACTTGCAGGACGTGG
TCATCGGCAAGGTGCGGTGTGCCTTGGACAAGGAAATCAAGATCTTTGCG
CCGGCAGTGACCGGGAATCGGGAATTTTGTCGAGCGCGTGTCTCACTCCC
GTGAGGGTGCGTTGTTCGTGAGCGCACCATCGTCCCACACAACCACGCCA
CGCTAAAAATGATGGACAGCCAGGTTTACCCCCAGGAATTCACAACATTT
ACACAAAACAGTAAGATGACGCACAAGACATCCTGTGACGCCTACGAGAA
TATGCTTTTTCGTCCACGAAATGTGCCCGAACCCCACAGATCTACTTTTT
GCTTGTGCGCATCAAGATCAAGCATATGGAGATGGCGATCATCAGAAGAG
AGACGGCAGGGACGGGATCCAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91303:6..478-

>mRNA_Ecto-sp13_S_contig91303.20697.1 ID=mRNA_Ecto-sp13_S_contig91303.20697.1|Name=mRNA_Ecto-sp13_S_contig91303.20697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91303:6..478- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGTGGGTATCGAGGACTGCCTTCACATCGAGTTCGAGTACGACAA
ATCAGCCTACCACTTGCAGGACGTGGTCATCGGCAAGATCTACTTTTTGC
TTGTGCGCATCAAGATCAAGCATATGGAGATGGCGATCATCAGAAGAGAG
ACGGCAGGGACGGGATCCAAC
back to top