mRNA_Ecto-sp13_S_contig913.20694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig913.20694.1
Unique NamemRNA_Ecto-sp13_S_contig913.20694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig913.20694.1 vs. uniprot
Match: D7G8Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y1_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 3.470e-135
Identity = 193/203 (95.07%), Postives = 198/203 (97.54%), Query Frame = 1 
Query:  106 MHVERLEVTDLQQAARASWEDRFKDEHPEFLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASCCVFAILSMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACVSYDWYHGGGMNTSSFPTKILSKDWNPSCPRSLIKYAVLVFAATVFCSMA 714
            MHVERLEV DLQQAARASWEDRFKD+HPEFLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASC VFAI SMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPAC+SYDWYHGGGMNTSSFPTKILSK+WNPSCPRSL+K+AVL FAATV CSMA
Sbjct:    1 MHVERLEVADLQQAARASWEDRFKDKHPEFLNANLWQREAIETRINAQDGFLFLIGLFVVLMLENMWSFDPSTFTSETRLDAFLALLVFGASCGVFAIFSMTMVRLKLQRLMVRDIAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACISYDWYHGGGMNTSSFPTKILSKNWNPSCPRSLVKFAVLAFAATVLCSMA 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig913.20694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y1_ECTSI3.470e-13595.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig913contigEcto-sp13_S_contig913:3922..7970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size714
Hectar predicted targeting categoryother localisation
Exons3
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.777383-CDS-Ecto-sp13_S_contig913:3921..41611681464184.777383-CDS-Ecto-sp13_S_contig913:3921..4161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 3922..4161 -
1681464184.7913413-CDS-Ecto-sp13_S_contig913:4392..47401681464184.7913413-CDS-Ecto-sp13_S_contig913:4392..4740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 4393..4740 -
1681464184.8034453-CDS-Ecto-sp13_S_contig913:7844..79701681464184.8034453-CDS-Ecto-sp13_S_contig913:7844..7970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig913 7845..7970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig913.20694.1prot_Ecto-sp13_S_contig913.20694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig913 3922..7970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig913.20694.1

>prot_Ecto-sp13_S_contig913.20694.1 ID=prot_Ecto-sp13_S_contig913.20694.1|Name=mRNA_Ecto-sp13_S_contig913.20694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
VRLGARRATRGTEENEKSYYSSKARLLANARFPPSMHVERLEVTDLQQAA
RASWEDRFKDEHPEFLNANLWQREAIETRINAQDGFLFLIGLFVVLMLEN
MWSFDPSTFTSETRLDAFLALLVFGASCCVFAILSMTMVRLKLQRLMVRD
IAALKVQQVTGRANRSLLDGLLARWKASSAQRQFQPACVSYDWYHGGGMN
TSSFPTKILSKDWNPSCPRSLIKYAVLVFAATVFCSMA
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mRNA from alignment at Ecto-sp13_S_contig913:3922..7970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig913.20694.1 ID=mRNA_Ecto-sp13_S_contig913.20694.1|Name=mRNA_Ecto-sp13_S_contig913.20694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig913:3922..7970- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGACTCGGCGCGAGGAGAGCGACAAGAGGAACCGAAGAGAACGAAAA
GAGCTATTATAGCAGTAAGGCACGCTTGCTCGCTAACGCGCGCTTTCCAC
CTTCCATGCACGTCGAACGCCTTGAGGTAAGAATTTGCGCACCCAGACCA
AGCACAGACGGCAGTTGATGAAAAGACTGCTGTCTCCCAGACCCAGTCCG
GCGCGGGCGGTGAGAAAGTGGGGGTGTTCACTGTTGAGAGTTGAAACCGC
TGCTGGTCAAGCAACATGTGCCCTGACTGTAACGGCACCTATATGCGTTC
CCTGACAGGAATGGCGGAGCGGACAATGTACGTCTATGTGTGGCCATATG
AAGCTACAAACGCTTATTTTGGCTTCAGCTCGCGGCAACACAGCAGCACC
ACTGCAGCAGCTACGACGGCAACAGTACCGCGCTATTTTGATTGCCGGTT
CGAATCTAATCTATTATAGTCTAACGTACGATGCGTAGATATATGACATC
AGGGAGATCGCACCCCCAGGACAGATTTTTGAAGTTCGATTTCTCCAAAG
CAGAACGAGTGGCAAGCGCCGAAAACGGTGGCGTTGAAGCCGTCTGGCCC
AGAGCTTTCCGAAAACGAATGTACGCGTATGGTTGCAAGTTTGTTCATCC
TCTTCGCTATAGTGTATAGTTGGGCCCCCTCAATAACGCCGGTTGAATAA
CGCCGGTGGCCCTCAATAGCGCCGGTAAAATTGTTGGGCACAGCCAGAGC
CCTCAATAGCGCCACACCGGCGTTAATGAGGACGGCCCGCAATAACTCCG
GTTTGGGCACCTCTACACCCCGCTATAGTGCCGGTTTTTCTCACTTCGGC
ATCCTGGAGCGGGCTGCGGAGGAGTGTGGGAACGCAGACGCTGCCCTTTA
CCTGTCCAAAGTCAGGATGGCCATGATTGCAGCGCATGCTGCTAAGCAAA
CGCGCCAGACAGAATTGAGGGAATTTGTTGCGACGGAAGTTATTGAAGCG
GAATGAGGAGGGGAGATAACGCGGGGGTGTAGTCAAAGCCGTTATTTTTT
GTTGTATCTTTTCTGGCGTTTGACCCGTACTGCCTTTACCCGGCTAGCTG
GTTTTGTGCCCGATTATCTGAACGTCTTTCTAGATGATCAGTTGATAAAC
ACAACAAAACTCTTGGCGGCTGAGGACCATAACTTTTCCTTTGCAGTCCG
CGCACTTCATTCACCACTCAACGGGCTCCTCCTCAATTTGTGAATATCTT
CGCTCCGTAAAGCGCAATCGCTGCGCCACATGACCACAATACCTCAATAG
TGCCACAACCGGCGGTACTGAGGGTTTCTGAGCCCTCAATACCGCCGGCC
GTGGCGCTATTGAGGCAAAAATCCAATAGCGCCGGTCGCTCTGAATAGCG
CCGGTCGAGGCGCTGGGCACATACCGGCGTTATTGAGGGCCCCCCACTGT
AAGCTTTGAAAACCGGTCGAGGGGTGTTGCATCACGTGTCACCTACGGCG
GTACATAGTAGTCTCGACACCTTCACCTCTGTAGCAGATCTCCCGGGGCA
TTAGTTCTACGGTGCAAGAAATGTTGTTCGAAAATCTCAAGTACAGCAGT
ACGGTAAGCACCTTTTTTTTGGTCATCCCAAATTCGGAGTGTTACTAGTT
TCGACGCGTTCTGTACCTACATACATGTGTGTTGCATGGGATACCACACC
CCCAGGACCGGTTTTCAAAGCTCGATTGCCTCTAGGCGAAGAGGGTGCTG
AGTCCACATGATGCGTGTTCGGAAAGATCTCGACGAAACGGTTCCAACGC
CGCCATTCTCGGGCGCCATCACTGTTTTTCCTGCCGAGAACTCTAGCTTT
GAAAATCGGCGCAGGGTGTGTGATATCTTGCGCATCCTGCGTACGGTTCT
TCAGCGCTCACAGCATGTACTTTCTGCCGCGTGCGTACAGCAAGCAGTAG
GAGTTCCAATCCATGCTCACACAGAAGGGTCGATTCCCCTGAAACGTACT
ACCCACCCTCCTGCGGTGCTTGCCTTCGGTTTTTAACGCGAGATGAGAGT
CGCATTTTCTTCCCTTAGGTGTACACACGCAGGACAACACGCATTCAGTA
GACTACATACAGCAGGAGACCCAACTACTACGACAAATAAGAAAGCAGGT
CTACCAAGCATAGCTCACCGGTGGGTTCTACAATAAACTCTGCTGGCAAA
ACAATTATCTTCGACAGCAGCGGCGACGAAATAAGAAGCTCGATCTCGAT
TATTGACGCTTATTATCTCCTGACCCGTTCTGTAGCGTTTTGCACGACCA
GGAAAGGAAGAAGGAGACTAACATTGCAAGAAAAGCTCGCTTACGCCGGA
ATTCGAACCCGTCACCAAACCTGGTCGCTAGAAGGTTGCGAGGATACCAG
ATAGTAAGAAATGAGGCCTCGAACACAAAAAGACAAAAAGATATTTAAGA
AACGCGTCCAAGATCTCTAAAGATATGCCTCTAGTTACAGTTATCGCTCA
AGCTTTCAGCCGCGCTTGTGGTTGTACCCGACTAAACACAGTTTATGTCT
GCAGCTCTTCTTCACCCTCGTAGACCAGGCCTCGTGCCTGCCTCATGTGG
GCTGCAAATAGCCGATATAGAGTTGAAATACTTCGTACACAGCGATCAAC
ACTTAAAACCGCTCGCCGGGCTAGATGCTTGTTACTCAAACGAGCACCTG
TTTTTATGTCAATGTTCTTGTTTCGACCAGGTTTATCTTATTTTTCTTCG
CCGAAGGCCCCATGCCGAATACACCGTTTTTTTGTGGTGGGTAAATTCAA
CCTAGCACTTGATGGTACACCAAGTTCTTACGTGCTGGCGCTAACTCTGT
CGGGGTCCTCAACCTGGCGCCCAAAACGGCACTCAAGATCTTATGTTCGA
TACAATACCGAGCATGAAGTTCTTAACGGTCAAGTTCTGGAATGCGGGCG
CTGTCTGTATGCCTGTGCCAGCACAGCTTCGCCTACATCATGCATTTGCT
TGTGGTGTAAGGTCAGTTCCCGTTTCCGCGAAAACAAACAGAAGACATCA
GTGTCCGCCGTGCCCGCCGATTGGTTTTGGTCGGGAATATTCTGCAAGAC
CACCAGGGAAATTGTTTCGCTCTCCAAGAACAAGAGGGCATCACTGGATC
GGAGTTGACTGATCTCATGGACAGCTTCAGTAGACCCAGACGCAATCTAT
CACCTGCTACATGGATGCCACACGCACCAGGTGACTGACCTGCAGCAGGC
GGCGAGAGCATCATGGGAAGACAGGTTTAAAGACGAGCACCCGGAGTTCC
TCAATGCCAACCTTTGGCAGCGCGAAGCGATCGAGACGAGGATCAATGCG
CAGGACGGCTTTCTCTTTTTGATCGGCCTGTTCGTCGTCCTGATGCTGGA
AAACATGTGGTCTTTCGACCCCAGCACGTTTACTTCGGAGACGAGGCTCG
ACGCGTTTTTGGCTCTACTGGTGTTCGGAGCCAGCTGTTGCGTCTTCGCG
ATCTTGTCCATGACCATGGTTAGGCTCAAGTTGCAACGCTTGATGGTACG
GGACATCGCCGCTCTAAAGGTCCAGCAGGTAGACCCGAACAGATGAGAAA
GAGTAGGTTTCAGGTCACTGGATACAGGCTGAAACATTGTCCGTACTTGT
TTTACCTCCCCACCCTACCCCTAGTCGTATCTCCACGCTACAATACCTAT
CCTCATACGTCCAGGTGGGGTCCATCTGCCTTCACAGAGTGGGATCGCAA
AACATTCCCGACTTCATCATGACGGCCTTTATTGTTGTGACTAACGCACC
TCCTGGCAGGTGACGGGAAGGGCCAATCGTTCGCTACTGGACGGGCTCTT
AGCCCGATGGAAAGCCTCGTCGGCGCAACGCCAGTTTCAACCCGCGTGTG
TTTCGTACGATTGGTACCATGGTGGTGGCATGAACACCAGTAGCTTCCCC
ACGAAAATCCTCAGCAAGGACTGGAACCCAAGCTGCCCACGTTCACTCAT
CAAGTACGCGGTTTTGGTCTTCGCAGCTACGGTTTTTTGTTCCATGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig913:3922..7970-

>mRNA_Ecto-sp13_S_contig913.20694.1 ID=mRNA_Ecto-sp13_S_contig913.20694.1|Name=mRNA_Ecto-sp13_S_contig913.20694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig913:3922..7970- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCGACTCGGCGCGAGGAGAGCGACAAGAGGAACCGAAGAGAACGAAAA
GAGCTATTATAGCAGTAAGGCACGCTTGCTCGCTAACGCGCGCTTTCCAC
CTTCCATGCACGTCGAACGCCTTGAGGTGACTGACCTGCAGCAGGCGGCG
AGAGCATCATGGGAAGACAGGTTTAAAGACGAGCACCCGGAGTTCCTCAA
TGCCAACCTTTGGCAGCGCGAAGCGATCGAGACGAGGATCAATGCGCAGG
ACGGCTTTCTCTTTTTGATCGGCCTGTTCGTCGTCCTGATGCTGGAAAAC
ATGTGGTCTTTCGACCCCAGCACGTTTACTTCGGAGACGAGGCTCGACGC
GTTTTTGGCTCTACTGGTGTTCGGAGCCAGCTGTTGCGTCTTCGCGATCT
TGTCCATGACCATGGTTAGGCTCAAGTTGCAACGCTTGATGGTACGGGAC
ATCGCCGCTCTAAAGGTCCAGCAGGTGACGGGAAGGGCCAATCGTTCGCT
ACTGGACGGGCTCTTAGCCCGATGGAAAGCCTCGTCGGCGCAACGCCAGT
TTCAACCCGCGTGTGTTTCGTACGATTGGTACCATGGTGGTGGCATGAAC
ACCAGTAGCTTCCCCACGAAAATCCTCAGCAAGGACTGGAACCCAAGCTG
CCCACGTTCACTCATCAAGTACGCGGTTTTGGTCTTCGCAGCTACGGTTT
TTTGTTCCATGGCC
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