mRNA_Ecto-sp13_S_contig9128.20692.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9128.20692.1
Unique NamemRNA_Ecto-sp13_S_contig9128.20692.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A6H5JRY5_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRY5_9PHAE)

HSP 1 Score: 681 bits (1756), Expect = 9.620e-242
Identity = 368/401 (91.77%), Postives = 377/401 (94.01%), Query Frame = 1 
Query:    1 SLRCGPMYLRETVTGPFRNAATVSVKLSMVVGVIISYVLGGLLSGNPTIAYFGVWILAGTSLACLQLMPESPMYMLLHEEQFHRGQILDALRFTSPAATEADLVSLQKEILTEVLAYTPGHPSFAGGVPGSSGDASCDGAPAVPTARAQTGTATTTPTFTAPGAFSGNGVGEGTRDPTSSSTTGGGEGDAGYDPLDNSEKRGAVAMSVKNLPSLTKARGMRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVLSVDWGLAILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIFAH 1203
            SLRCGPMYLRETV  PFRNAATVSVKLSMVVGVIISYVLGG+LSGNPTIAYFGVWILAGTSLACLQLMPESPMYMLLHEEQFHRGQILDALRFTSPAATEADL+SLQ+EILTEVLAYTPGHPSFAGGV G SGDASCDGAPAVPTARA+TGTATTTP   A GAFS           TSS TTGG EGDAGYDPLDNSEKRGAVAMSVKNLPSLTKARGMRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAV+SVDWGLAILG LQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLML+IGG LGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIV M+HFGTSAIVV+LLPL+QDIGGYAAMFTCFFVVSILANIFAH
Sbjct:  192 SLRCGPMYLRETVREPFRNAATVSVKLSMVVGVIISYVLGGVLSGNPTIAYFGVWILAGTSLACLQLMPESPMYMLLHEEQFHRGQILDALRFTSPAATEADLISLQEEILTEVLAYTPGHPSFAGGVHGISGDASCDGAPAVPTARAETGTATTTPXXXARGAFSXXXXXXXXXXATSSPTTGGEEGDAGYDPLDNSEKRGAVAMSVKNLPSLTKARGMRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVISVDWGLAILGALQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLMIGGFLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVGMSHFGTSAIVVILLPLVQDIGGYAAMFTCFFVVSILANIFAH 592
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A250XNV3_9CHLO (MFS domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XNV3_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 5.680e-15
Identity = 57/187 (30.48%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:  661 RAALVLTAGLMVFEQASGMAAILYYG-------GVFLADIAVLSVDWGLAILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALI----GLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILA 1188
            R  L++ A LM+++Q +G  ++LY+        G+ L D   +SV     ++GV +LAM +A +  ++ +GR+PLL +G++G++ + ++L     L  ++E  +  ++     L  F   Y  S G + W++V E+FP   R+QAI++  + +FG++ +V ++LP MQ+  G +A + CF  V ++A
Sbjct:  346 RRPLLIGASLMLYQQVTGQPSVLYFATKLFKDSGLSLGDAEGISV-----LIGVFKLAMTLAAVSLVDRVGRRPLLLFGVSGMVLALILLSFSSSLS-SNEASFGQMLPSVSALLLFVGCYQVSFGPISWLIVGEIFPLEVRSQAIAVATVTNFGSNFMVSLILPGMQNSFGLSATYQCFAAVGVIA 526
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A256JDQ6_9EURY (MFS transporter (Fragment) n=1 Tax=Halorubrum sp. E3 TaxID=1483400 RepID=A0A256JDQ6_9EURY)

HSP 1 Score: 82.8 bits (203), Expect = 7.660e-14
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 1 
Query:  658 MRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVLSVDWGLA--ILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGR---WWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIFAH 1203
            MR AL++  GL VF+Q +G+ A++YY    L   A  S    LA   +G + +AM +  +  ++ +GR+PLL  G  G++ S  + V G +   AD      W A + L +F A ++  LG + W+L+SE++P   R  A+ +V +A++  +  V +  P++ D  G  A F  F   S++A +F H
Sbjct:  136 MRPALIVGLGLAVFQQVTGINAVMYYAPTILESTAFGSSQSILASVFIGTVNVAMTIVAILLVDRVGRRPLLLVGTGGMIGS--LAVAGLVFQFADPTGGVGWLATLTLVSFVAFFAIGLGPVFWLLISEIYPLAVRGSAMGLVTVANWLANLAVALSFPVLLDGIGTPATFWLFGGCSVVALLFTH 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A1D8BZC9_9PSEU (Sugar porter (SP) family MFS transporter n=1 Tax=Actinoalloteichus hymeniacidonis TaxID=340345 RepID=A0A1D8BZC9_9PSEU)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-13
Identity = 64/182 (35.16%), Postives = 101/182 (55.49%), Query Frame = 1 
Query:  667 ALVLTAGLMVFEQASGMAAILYYGGVFLADIAVLSVDWGLAILGVLQLAMAVAV---MYALNPIGRKPLLYYGLAGLMASS-LMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVV-VLLPLMQDIGGYAAMFTCFFVVSILANIF 1197
            A VL  G +V  Q +G+ A+ YY      D+        L +  V+QLA  VA    ++A++ +GR+P+L  G++ ++ASS LM+++     +A+ G  W  +G+  FTA+++   G++VWV  SE FP   RAQ  S++  A    + IV    LPLM  IGG +A F  F  +S +A +F
Sbjct:  251 AFVLGLGFLV--QITGINAVTYYSPSIFEDMGFTGYGALLGLPSVVQLAALVATIGALFAVDRLGRRPILLGGISAMVASSVLMMIVFASGSLAEGGSMWGFVGILVFTAAFNFGFGSMVWVYASESFPARLRAQGASLMLTADLVANMIVAQFFLPLMDGIGG-SATFGIFTALSAVALVF 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: UPI000E5BC8FF (sugar porter family MFS transporter n=1 Tax=Rubrobacter indicoceani TaxID=2051957 RepID=UPI000E5BC8FF)

HSP 1 Score: 82.8 bits (203), Expect = 1.560e-13
Identity = 56/184 (30.43%), Postives = 100/184 (54.35%), Query Frame = 1 
Query:  658 MRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVLSVDWGLAILGV--LQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLL--GMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIF 1197
            +R  L++  GL VF+Q  G+  I+YY    + +  + +    LA +GV  +   M    +Y ++ +GRKPLL +GL G++AS L+L+ GG    G+     W  + GL  + AS++ + G ++WV++ E+FP   R     +  + ++G + IV ++ P++    G   +F    V+S+ A IF
Sbjct:  269 VRPMLIVGLGLAVFQQFVGINTIIYYAPTIIGETGLATQTAILATVGVGLVNFLMTFVAIYLIDRVGRKPLLIFGLIGMIAS-LLLLAGGFFVGGLEGAPAWLTITGLLLYIASFAATFGPVMWVMLPEIFPLHVRGAGTGVSTIGNWGANFIVSLMFPVLAAAIGLTFVFGLLAVISVGALIF 451
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A2P6VJ23_9CHLO (D-xylose-proton symporter-like chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VJ23_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-13
Identity = 62/182 (34.07%), Postives = 97/182 (53.30%), Query Frame = 1 
Query:  661 RAALVLTAGLMVFEQASGMAAILYYGGVFL--ADIAVLSVDWGLA-ILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLML---VIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILA 1188
            R  L +   LM+F+Q +G  ++LYY       A  A      G+A ILG  +L M    +  ++  GR+PLL YG++G++ + L+L    IG L   AD   W  L  L  +  +Y  S G + W+L  EVFP   R QAI++  + +FG++ +V +LLP +Q+  G AA +  F  + + A
Sbjct:  329 RRPLAIGMSLMLFQQITGQPSVLYYAAKIFQAAGFAGAEEATGVALILGFFKLIMTALAVATVDSWGRRPLLLYGVSGIVLALLLLGSAQIGSLPIPADLLAWTNLGALLLYVGAYQMSFGPISWLLCGEVFPLKVRGQAIALATLTNFGSNFVVSLLLPTIQEDFGQAATYFTFAAIGVAA 510
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A7K1ZHZ3_9BACT (Sugar porter family MFS transporter n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZHZ3_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 3.480e-13
Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = 1 
Query:  652 RGMRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVLSVD--WGLAILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIV 1107
            RG+R ++VL   L    Q SG+ AI+YYG   L +      D   G  ++GV+ +   +  ++ ++ +GR+PLL  G++GL+ S  +LVIG L         W LI +  + A ++ S G ++WVL+SE++PT  R +A+S+   A +G +A+V
Sbjct:  251 RGIRFSIVLGVALGFLTQVSGINAIIYYGPRILEEAGFTLGDALGGQVVIGVVNVLFTLVAIWKIDDLGRRPLLIGGVSGLVVS--LLVIGALFQAGATEGPWLLIFILVYIACFAASFGPVIWVLLSEMYPTRVRGRAMSVATFALWGGTALV 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: A0A8K0DPC3_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DPC3_9ROSA)

HSP 1 Score: 81.3 bits (199), Expect = 5.350e-13
Identity = 54/182 (29.67%), Postives = 103/182 (56.59%), Query Frame = 1 
Query:  667 ALVLTAGLMVFEQASGMAAILYYGGVFL--ADIAVLSVDWGLAIL-GVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIFAH 1203
            ALV+ AGL++F+Q +G  ++LYY       A  +  S    ++IL G+L+L M  A +  ++ +GR+PLL  G++G++ S  + ++G      DE    A++ L  +   Y  S G + W+++SE+FP   R + +SI  + +FG +AIV      ++ + G   +F  F ++++++ +F +
Sbjct:  304 ALVIGAGLVLFQQITGQPSVLYYAASIFQSAGFSAASDATRVSILLGLLKLIMTGAAVLVVDRLGRRPLLLGGVSGMVIS--LFLLGSYYLFLDEAAAVAVVALLMYVGCYQLSFGPIGWLMISEIFPLRLRGRGLSIAVLVNFGANAIVTFAFSPLEALLGAGILFYAFGIIAVVSLVFIY 483
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: UPI0010A39397 (D-xylose-proton symporter-like 2 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A39397)

HSP 1 Score: 80.5 bits (197), Expect = 9.390e-13
Identity = 51/180 (28.33%), Postives = 102/180 (56.67%), Query Frame = 1 
Query:  667 ALVLTAGLMVFEQASGMAAILYYGGVFL--ADIAVLSVDWGLAIL-GVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIF 1197
            AL +  GL++F+Q +G  ++LYY    L  A  +  S    ++IL GVL+L M    +  ++ +GR+PLL+ G+ G++ S  + ++G      ++    A++GL  + ++Y  S G + W+++SEVFP   R + +S+  + +FG +A+V      ++ + G   +F  F  +++++ +F
Sbjct:  297 ALTIGVGLVLFQQITGQPSVLYYAATILKSAGFSAASDATRVSILLGVLKLIMTGVAVVVVDRVGRRPLLFVGVTGIIVS--LFLLGSYYTFLNDASAVAVVGLLLYVSAYQVSFGPIGWLMISEVFPLRLRGRGLSLAVLVNFGANALVTFAFSPLKALVGAGVLFYIFGGIAVVSLVF 474
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Match: I3SFI8_MEDTR (MFS domain-containing protein n=8 Tax=IRL clade TaxID=2233839 RepID=I3SFI8_MEDTR)

HSP 1 Score: 80.5 bits (197), Expect = 9.530e-13
Identity = 53/189 (28.04%), Postives = 101/189 (53.44%), Query Frame = 1 
Query:  661 RAALVLTAGLMVFEQASGMAAILYYGGVFL--------ADIAVLSVDWGLAILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIGGLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAISIVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIFAH 1203
            R ALV++AGL++F+Q +G  ++LYY    L        AD   +S+     +LGV +L M    +  ++ +GR+PLL  G++G++ S  + ++G      D     A++GL  +   Y  S G + W++++E+FP   R + +SI    +F  +A+V      ++D+ G   +F  F  +++ + +F +
Sbjct:  301 RKALVISAGLVLFQQITGQPSVLYYAASILQSAGFSLAADATRVSI-----LLGVFKLIMTGVAVVVVDRLGRRPLLLGGVSGIVIS--LFLLGSYYIFLDNAAVLAVVGLLLYVGCYQISFGPMGWLMIAEIFPLRLRGKGLSIAVFVNFAANALVTFAFSPLKDLLGAGILFYIFSAIAVASLVFIY 482
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9128.20692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRY5_9PHAE9.620e-24291.77MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A250XNV3_9CHLO5.680e-1530.48MFS domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A256JDQ6_9EURY7.660e-1432.09MFS transporter (Fragment) n=1 Tax=Halorubrum sp. ... [more]
A0A1D8BZC9_9PSEU1.110e-1335.16Sugar porter (SP) family MFS transporter n=1 Tax=A... [more]
UPI000E5BC8FF1.560e-1330.43sugar porter family MFS transporter n=1 Tax=Rubrob... [more]
A0A2P6VJ23_9CHLO2.030e-1334.07D-xylose-proton symporter-like chloroplastic n=1 T... [more]
A0A7K1ZHZ3_9BACT3.480e-1334.42Sugar porter family MFS transporter n=1 Tax=Bacter... [more]
A0A8K0DPC3_9ROSA5.350e-1329.67Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
UPI0010A393979.390e-1328.33D-xylose-proton symporter-like 2 n=1 Tax=Prosopis ... [more]
I3SFI8_MEDTR9.530e-1328.04MFS domain-containing protein n=8 Tax=IRL clade Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9128contigEcto-sp13_S_contig9128:600..6484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score655.6
Seed ortholog evalue1.5e-185
Seed eggNOG ortholog2880.D8LJU5
Model size1203
Hectar predicted targeting categorysignal anchor
Exons8
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
Ec32 ortholog descriptionGeneral substrate transporter
Ec32 orthologEc-23_000180.1
Cds size1185
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9128.20692.1prot_Ecto-sp13_S_contig9128.20692.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9128 600..6466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.5100923-CDS-Ecto-sp13_S_contig9128:599..6741681464184.5100923-CDS-Ecto-sp13_S_contig9128:599..674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 600..674 -
1681464184.5258994-CDS-Ecto-sp13_S_contig9128:1907..20031681464184.5258994-CDS-Ecto-sp13_S_contig9128:1907..2003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 1908..2003 -
1681464184.5394807-CDS-Ecto-sp13_S_contig9128:2242..24001681464184.5394807-CDS-Ecto-sp13_S_contig9128:2242..2400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 2243..2400 -
1681464184.5530777-CDS-Ecto-sp13_S_contig9128:3062..31971681464184.5530777-CDS-Ecto-sp13_S_contig9128:3062..3197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 3063..3197 -
1681464184.5667233-CDS-Ecto-sp13_S_contig9128:3516..37191681464184.5667233-CDS-Ecto-sp13_S_contig9128:3516..3719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 3517..3719 -
1681464184.580165-CDS-Ecto-sp13_S_contig9128:4652..49131681464184.580165-CDS-Ecto-sp13_S_contig9128:4652..4913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 4653..4913 -
1681464184.5943444-CDS-Ecto-sp13_S_contig9128:5546..56731681464184.5943444-CDS-Ecto-sp13_S_contig9128:5546..5673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 5547..5673 -
1681464184.608182-CDS-Ecto-sp13_S_contig9128:6336..64661681464184.608182-CDS-Ecto-sp13_S_contig9128:6336..6466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9128 6337..6466 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.6224558-UTR-Ecto-sp13_S_contig9128:6466..64841681464184.6224558-UTR-Ecto-sp13_S_contig9128:6466..6484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9128 6467..6484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9128.20692.1

>prot_Ecto-sp13_S_contig9128.20692.1 ID=prot_Ecto-sp13_S_contig9128.20692.1|Name=mRNA_Ecto-sp13_S_contig9128.20692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=395bp
MYLRETVTGPFRNAATVSVKLSMVVGVIISYVLGGLLSGNPTIAYFGVWI
LAGTSLACLQLMPESPMYMLLHEEQFHRGQILDALRFTSPAATEADLVSL
QKEILTEVLAYTPGHPSFAGGVPGSSGDASCDGAPAVPTARAQTGTATTT
PTFTAPGAFSGNGVGEGTRDPTSSSTTGGGEGDAGYDPLDNSEKRGAVAM
SVKNLPSLTKARGMRAALVLTAGLMVFEQASGMAAILYYGGVFLADIAVL
SVDWGLAILGVLQLAMAVAVMYALNPIGRKPLLYYGLAGLMASSLMLVIG
GLLGMADEGRWWALIGLYAFTASYSTSLGALVWVLVSEVFPTCHRAQAIS
IVAMAHFGTSAIVVVLLPLMQDIGGYAAMFTCFFVVSILANIFAH
back to top

mRNA from alignment at Ecto-sp13_S_contig9128:600..6484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9128.20692.1 ID=mRNA_Ecto-sp13_S_contig9128.20692.1|Name=mRNA_Ecto-sp13_S_contig9128.20692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9128:600..6484- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTCCGCTGCGGGCCGATGTACCTCCGAGAGACAGTGACGGGGCCGTT
CCGGAACGCCGCGACGGTGTCTGTTAAGCTCTCCATGGTGGTCGGGGTGA
TCATCTCGTATGTCTTGGGGGGCCTCCTCTCCGGCAACCCCACGATCGGT
GAGACTTGGTTTGGTTTTTGGGGTACCGTACCGAAGGAGGCCCGATATAG
TGGCAACTTGAATGTCTAGTGGACCTGCCGATGTATGTAGTGGCATCAAA
AGCTCTTGTCGCAATCTCAACATGTACATGAAGAACCCGAGACATGGAGT
AGTTGTAGTGCCCTGAACAGTGGCATGTTCTCCTCTGACCCTTACATGCC
ACTACTATGTAGTAGGGGCCATCATGGCAGTGACGACCGGTGTCGTGCCG
GCATCTTGTTGCGAGAATGCTCTGGTCGACAGACAGACGCGTGTATGTGT
GTCGTCGACCTCATGCGTCCCCGCCGAACCCGCGCAAAAAAAAAATCGAC
CCACGTTGCTACAACACACGGTTTTGGGACGAATTGATCGTTCACTCTGT
GTTTGGCAGCACCAAAAACTGTGTTTTTTTTTTTTTTTTTTACTATTGTA
CACTTGTATGTTTTGTTTTGTTTTTGGTGGCACAATGGCATATTTTCGGA
TTTTGGCCCCGTTCGGAGTACAGTTGGCCTTGCGTGGTAAGAAAAAAGCA
ATCATGAATCCATATTTCTCTTGTTCAATCGTTTTTCTTTCTATATGATG
GACTAGAGTGCCACTGTGCTTGTTGATTTGTCCGTTCTTTTTTTTTTTCG
TGCCTTGACAGCATACTTCGGTGTGTGGATCCTAGCCGGAACGTCTTTGG
CTTGCCTGCAGCTGATGCCGGAGTCGCCCATGTACATGCTCCTACACGAG
GAACAGTTCCACAGGGGGCAGATCCTCGATGCCCTAAGGTGACCCATGCC
CTAGATTATGCCGCTATGCATACAGCACTCAGTCGACTACCGGAAGAGGC
AGAGAGATGGCACCCCCCTTAGACACCCGTTCAAAGCTCGATTACTCCAC
AATAAAGTGGGTGCGGACAGAGCCCGATGCATCTGCGGAAAGCCCTCGAC
GTGAAGTTTCCAAAACGAATTCCATTTTTGATGTTGGCACAAGTGCGAGC
TCGGTTGTTGGCTTTGAAATTCGGTCTATAATAGGGGGGTGCCATCTCTC
CGCCTCTTGCGGTTTGTATCATTCGCGTACTACCTGAACACGGAAGGGAA
ACAGATGTGTGCAGTTAGTTACCTTCCTGTAAGGTGTGTGTAGGAAGGAA
GACTTTCCCTCCGACTTTTTTTTTTTTTGCATGTCGATCGATGCCGTTGA
CGCTGCTGGTCGTTGAGCGCCGCAGTATTTATAGCTGCTCAAAGATCATA
CCTGGTTGGTATGGAACGTTGCGGTACGGTATGGAGCGCCACGGTACGGT
ATGGAGCGCTACGGTACGGTATGGAACCGTGCGGATAGGGTCGCGACCCA
TGGTATCACGAACAAAAACAACCATTGGATTTTTCCCTTTTGTTTTTGGC
CTGCTTGCCGGGTATGCGCAGGTTCACCAGCCCGGCGGCCACCGAGGCTG
ACCTGGTCTCCCTTCAGAAGGAGATCTTGACGGAGGTGCTGGCGTACACC
CCTGGACACCCCTCCTTCGCCGGGGGGGTACCTGGTAGCAGCGGCGACGC
GTCTTGCGACGGTGCCCCCGCTGTCCCAACGGCTCGCGCGCAGACCGGCA
CGGCCACGACTACTCCGACCTTCACAGCACCAGGGGCTTTCTCTGGCAAC
GGTGTTGGGGAGGGGACAAGGGACCCCACCTCGTGAGTCGGTCGGAACCC
CCTTGGCGAGAAATGACGTTCAACGAGGAATTAGAACGGGGAGGGGGATA
CGCGGACCCTTTTCCCCAACCCTAACCCTGACCCAACTTCCCCGATTGCA
AGCTTTATCCAACATGTTCACTCAACAGTAAAACTGTGGGAAGGCTAGTT
GTCGGTTAGCACGTTTCATCATCATATTGGTTGACGATTTATTACTTTTT
GCTCATAGTGAGGTTTCCGTGCTGCCGATGGGGCGACAGGACAGGCGGAA
CGCGATTGGTTTGCCTTCAGTCTCAAGCAGGAGAGAGGCGAAGCCAGCCC
TTTTGTTTTCGCTTTTTTTTTGCTGTCAGTAGTATGCCAACCACTGCGTT
CTACTGCTACGTAGCGATAGAAAGTGCGGGACGATTCCGGTAAATCGAGG
GGCATGCAAAACCTGTGACCCTTCTTTAAAGTAGCAGTTTTATTCGTTTT
GCCGAAGACGTGTTGCTGTGTCATGACTTGGTAGGAGTATAGAGTGCGCC
GTTGGCGCTCGCAATGTACAAATTCTGTGGAGACAAAGAGGGTCAGATCG
TCGCGAAAAACAAGAAGGACAAAAGACTCACAAGCAAAACTCAGCGGTGG
ATCCCACACTAAACTCTATACACCGAAGTAGTCCATTTAGTACGTTGTGC
TCTCCGGTTGCTACGTGCGAAATACTCGTAGCGAATGTAGGAGTGTCGAA
TCGATAAAGCCACGACCCGATTTGCATCGACTGTCTTTTATAGAAAATAC
ACACATTTATCTCTAAGAAAGTTTTAAAGAAAATACGCATCCATTTTCAG
AAAGACTACGAAGTATAAGTTGGAGGTAATACTGCTGTACCACAGCCGAA
GGGAGCGCGTTTATCTCCCAGCGCCAGCTGCTTTACTCTAATGCGACCCC
CCCCCCCCCTGGCAGGAGTTCCACAACCGGAGGCGGGGAAGGGGACGCAG
GGTATGATCCCCTCGACAACTCGGAGAAGAGGGGGGCCGTGGCCATGTCG
GTCAAGAACCTGCCCTCGCTTACCAAGGCCCGCGGCATGCGCGCCGCGTT
GGTGCTGACCGCTGGTCTGATGGTGTTCGAGCAAGCTTCTGGGATGGCAG
CCATTTTGTACTACGGAGGTGGGGGCAGTAGATGGCCTGCTATTTGGTGC
GGTTGTTTCCGTTTATTGGCTGCGGTTGTGTGTTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGCTGTTGTTGCTGTCGTTGCGGTTGATGGCGATGGCGT
GTGTGTTTGGTTTTGCGGGATGAGCGGATGTTGCTGACCTCTTACTGCTC
TCCCTCCCCTGCTGTTGCCTTCCAACCGACCTTGCGCTGGCTTCCCTTTT
CTGCCGATCTTCCCTCCTCTGTACTGAGCAAACCAAAGCCTTACAATGAT
CTCCTGCGCATCTCGTCCTGTCTCACTCCTTCTGCAGGGGTGTTTTTGGC
GGACATCGCCGTGCTCTCCGTAGACTGGGGCCTTGCCATCCTCGGTGTCC
TGCAGCTAGCAATGGCCGTGGCGGTCATGTACGCCCTCAATCCCATCGGG
CGGAAGCCGCTCTTATATTACGGTAAGCACAGGACCGTGGCATAAATAGT
CCCATCTCCTGCCAGAATATGTCCTGTCTGCTATCAGACTGCGGGAAGTA
CAATCCCTATGTCGTATCTGCTGCTAGATTATGGTAAGTACTATTTTGTT
TGTCTTGTCTACTGTTAGGCAACGGGTAGTACAGTTTGTCCTATCTCTGC
TGTTCCATTACGGTTAGAACGTCCTATTTGCTGTAGTACTAAATCAAGCG
TGTCCTACCTGTTGTTTGACGAGGTAAAGTCGTGCAGTACGTCTTCCACG
GGCCTCGTGACGCTGGTACTCTCGGTCGTTGGTTTGTGTCTTGTGTTTGT
GGACAGCAGCACCTGACCTTGTTTCTTTTTTTGTTATATCTCTCTCTCCC
ATCCTGATTGGGAAGCTGCTGTTACACCCGGTGATACAGATACCTGTAGG
TGCCCTAGCCATGCCGTCATTTTTTTTATTCTAACGGCGATCGTACTTTC
TTGGATGTGGCCTAGCTTACTTGTTGCGCCCGCTGTTTTCATTTCCACGC
GCTCTGCCTACAGCGCCCGCTGTTCTTAGCGAAGCTGAATGTCCCTTTGC
TTCCCTCCCTGCCTTGTACTCGATGTTTGCCCATGTCTGTCTCGGACGCT
CCTCTCGCCAAAACCACCGTGCAAACCAAACCAGGGCTGGCGGGTTTGAT
GGCGAGCTCGCTAATGCTGGTGATCGGAGGTTTGTTGGGGATGGCCGATG
AAGGTCGATGGTGGGCTTTGATTGGCCTCTACGCCTTCACGGCGTCTTAC
AGCACCAGCCTGGGGGCTTTAGTGTGGGTCTTGGTATCAGAGGTGAGGCT
CTATATTCGTCGTCGATGTTGATGTGGTTGTTGTTGCTGTTGCTGTTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATCGTTGCTTTGTTTGGTGC
GTGCCTCCTTTGTGTCAGTCCTTCCACAACTTTTCACGAACAGCAGTACA
CACATGGGCGTCGTTTTCTCATGGTCGAAACCTCTTGCTACTCTTGGATG
TCCATGACATGACATGTGCATGACATGACAGGTATTCCCGACCTGCCACC
GAGCACAGGCGATCTCAATCGTGGCTATGGCGCACTTCGGCACTTCGGCC
ATCGTTGTGGTTTTGCTTCCTCTCATGGTGAGTGTACAGACAGGTCTTGC
TGGGTAGGGTGTGCTTTGCGTCAGAGGCTGTGGGGAAAAGGTTGACTCGA
GACCTTGCTATTCACGAGTGAACAACAGGATAAGCAAGCCATACTGCGTA
CTAGAAGGTGGTCCGCCCTTGCAACACATACCTACATGATACACGAAACC
TCCTAATAGATCTCCGTATATACGTATCTAGAACTGAGGACAGACATGAC
ACGTAAACCTCCTAGATCTCCGTAGATCCGTATCTCGTGCTGAGTATACC
TAACAAGTCTTGTTCCTATGATGGCGCTGTTGTATTGGATCCAAAAACGT
GGCCACCACAACACATTGGGCAAAAGGCTTGGCTCATCCGTACTCTTGAA
ACCTTTGCCGCACATACGAGCATACCCTATTATACCCCCAGTCTGGCGTC
TCTCGTGTTTTGTCTGGTACATTGTGTCTCACAGTTGTACAACGGGTACG
AAGTTCGAAGCTTCCGCTTCGAAATATTTTCTTAAGGGAGCGATTCGATT
CGCAGCATGATGGGTACGAACGTACATACTTGCGTTACGGACACCGACAC
GGGGCACAACAAAGTCAGGTGTACCGACGCAGTGAGTTTCCTTTTGCCGC
CTTTCCTACCAAGCGCGGGAGAATTCCCAACGACAGCGGGCGCTACTACA
GCTGGGCACCCCTACTCATCACTATCATCGTTGGTGGCCTTGCTGTGACG
GTTGCGGCGGGGGACGCGGTCCTCGTTGCAGGACTGCTTTGCCACAGTGG
CAGCAAGGCCACCGACGATGATGATGATAGTGAGGAGTAGGGGTGCCCAG
CTGTAGTAGCGCCCGCTGTCGTTGGGACCTCTCCCACTTGGTAGGAAAGG
CGCCAAGAGGAAAGAGGAAACTCACTGCGTCGGTAGCTGCCGGTACACCT
GACTTTGTTGTGCCCCGTGCCGGTGTCCGTACCCGTAGTTACGGTACGAA
GCTTCTATTTTGTTGATAGTTTCTTCGCGGGGGCTGTTGGCAGCATGACC
TCGGTGGCTACGCTGATTGCCGACTCTCTTTTGCTGTGATAGTTCGCCGC
AAGACGTGTGAGAGCATGCGCTTCCATTCCATTCCCACGTCATGTATTCA
CTTTTCGATCCCTCAACTCTTACATAGGCATGCGCGTCCGTTCCATTCTT
CCCACATCCTGTACTAACTTGGTCGATTCCTCGACCTCTTGTCGCTGTTA
AACTTTGCAGCAAGACATCGGAGGCTACGCGGCCATGTTCACGTGCTTCT
TCGTGGTGTCCATTTTGGCCAACATCTTCGCCCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9128:600..6484-

>mRNA_Ecto-sp13_S_contig9128.20692.1 ID=mRNA_Ecto-sp13_S_contig9128.20692.1|Name=mRNA_Ecto-sp13_S_contig9128.20692.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9128:600..6484- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCTCCGAGAGACAGTGACGGGGCCGTTCCGGAACGCCGCGACGGT
GTCTGTTAAGCTCTCCATGGTGGTCGGGGTGATCATCTCGTATGTCTTGG
GGGGCCTCCTCTCCGGCAACCCCACGATCGCATACTTCGGTGTGTGGATC
CTAGCCGGAACGTCTTTGGCTTGCCTGCAGCTGATGCCGGAGTCGCCCAT
GTACATGCTCCTACACGAGGAACAGTTCCACAGGGGGCAGATCCTCGATG
CCCTAAGGTTCACCAGCCCGGCGGCCACCGAGGCTGACCTGGTCTCCCTT
CAGAAGGAGATCTTGACGGAGGTGCTGGCGTACACCCCTGGACACCCCTC
CTTCGCCGGGGGGGTACCTGGTAGCAGCGGCGACGCGTCTTGCGACGGTG
CCCCCGCTGTCCCAACGGCTCGCGCGCAGACCGGCACGGCCACGACTACT
CCGACCTTCACAGCACCAGGGGCTTTCTCTGGCAACGGTGTTGGGGAGGG
GACAAGGGACCCCACCTCGAGTTCCACAACCGGAGGCGGGGAAGGGGACG
CAGGGTATGATCCCCTCGACAACTCGGAGAAGAGGGGGGCCGTGGCCATG
TCGGTCAAGAACCTGCCCTCGCTTACCAAGGCCCGCGGCATGCGCGCCGC
GTTGGTGCTGACCGCTGGTCTGATGGTGTTCGAGCAAGCTTCTGGGATGG
CAGCCATTTTGTACTACGGAGGGGTGTTTTTGGCGGACATCGCCGTGCTC
TCCGTAGACTGGGGCCTTGCCATCCTCGGTGTCCTGCAGCTAGCAATGGC
CGTGGCGGTCATGTACGCCCTCAATCCCATCGGGCGGAAGCCGCTCTTAT
ATTACGGGCTGGCGGGTTTGATGGCGAGCTCGCTAATGCTGGTGATCGGA
GGTTTGTTGGGGATGGCCGATGAAGGTCGATGGTGGGCTTTGATTGGCCT
CTACGCCTTCACGGCGTCTTACAGCACCAGCCTGGGGGCTTTAGTGTGGG
TCTTGGTATCAGAGGTATTCCCGACCTGCCACCGAGCACAGGCGATCTCA
ATCGTGGCTATGGCGCACTTCGGCACTTCGGCCATCGTTGTGGTTTTGCT
TCCTCTCATGCAAGACATCGGAGGCTACGCGGCCATGTTCACGTGCTTCT
TCGTGGTGTCCATTTTGGCCAACATCTTCGCCCAC
back to top