mRNA_Ecto-sp13_S_contig91270.20690.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91270.20690.1
Unique NamemRNA_Ecto-sp13_S_contig91270.20690.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: D7FQS1_ECTSI (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS1_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.080e-13
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   49 GDFRMYFGENPDKVKNIVRGTLGRFQELYAPALKVKKGL 165
            GDFRMYFGENPDKVKNIV  TLGRFQ+LYAPALK   G+
Sbjct:  195 GDFRMYFGENPDKVKNIVSATLGRFQDLYAPALKGIPGM 233
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: W4GAX7_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAX7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.960e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    4 TLDALISKVWNRFPAGDFRMYFGENPDKVKNIVRGTLGRFQELYAPAL 147
            T + L  K+      GDFRM FGENP KV+NIV G+L +F++LY P +
Sbjct:  182 TEEQLFMKIAGISYWGDFRMVFGENPKKVRNIVHGSLDKFKQLYQPQI 229
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: A0A6G0XJ12_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ12_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.630e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 TLDALISKVWNRFPAGDFRMYFGENPDKVKNIVRGTLGRFQELY 135
            T + L +K+      GDFRM FGENP KV+NIV+G++  FQ+LY
Sbjct:  161 TEEQLFTKIAGISYLGDFRMIFGENPKKVRNIVKGSMASFQQLY 204
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: UPI000C6CF1DF (phosphatidate cytidylyltransferase, mitochondrial-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CF1DF)

HSP 1 Score: 51.2 bits (121), Expect = 5.080e-6
Identity = 26/55 (47.27%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    4 TLDALISKVWNRFPAGDFRMYFGENPDKVKNIVRGTLGRFQELYAPALKVKKGLH 168
            T + L  KV      GDFRM FGE+ +KV+NIV   L  F +LY P LK    LH
Sbjct:  175 TKEELFIKVSELSYTGDFRMLFGEDKNKVQNIVHPNLDAFSQLYEPVLKSTNNLH 229
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: A0A5D6YZU9_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YZU9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.880e-6
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   49 GDFRMYFGENPDKVKNIVRGTLGRFQELYAPALK 150
            GDFRM FGENP KV+NIV G +  F+ELYA  +K
Sbjct:  187 GDFRMTFGENPKKVRNIVAGNVAAFRELYASQIK 220
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: W7TRJ7_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRJ7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.020e-6
Identity = 23/33 (69.70%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:   49 GDFRMYFGENPDKVKNIVRGTLGRFQELYAPAL 147
            GDFRM FGENP KVKNIV   L  F ELY+P L
Sbjct:  221 GDFRMTFGENPRKVKNIVTSNLPHFHELYSPVL 253
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: B0WG01_CULQU (Phosphatidate cytidylyltransferase, mitochondrial n=5 Tax=Culex TaxID=53527 RepID=B0WG01_CULQU)

HSP 1 Score: 50.4 bits (119), Expect = 9.490e-6
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   46 AGDFRMYFGENPDKVKNIVRGTLGRFQELYAPAL 147
            AGDFRM FGEN DKV NIVR  L  F+ LY+P L
Sbjct:  188 AGDFRMIFGENKDKVNNIVRPQLENFRNLYSPTL 221
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: UPI000C201DF8 (phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C201DF8)

HSP 1 Score: 50.4 bits (119), Expect = 9.510e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   46 AGDFRMYFGENPDKVKNIVRGTLGRFQELYAPALKV 153
            +GDFRM FGEN DKV+NIV+  + +F+ELY P +K+
Sbjct:  186 SGDFRMMFGENKDKVENIVKPQIIKFRELYKPYIKI 221
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: A0A8J5AZB8_9DIPT (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5AZB8_9DIPT)

HSP 1 Score: 50.1 bits (118), Expect = 1.290e-5
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   46 AGDFRMYFGENPDKVKNIVRGTLGRFQELYAPAL 147
            AGDFRM FGEN DKVKNIV   L  F++LY P L
Sbjct:  186 AGDFRMIFGENKDKVKNIVAPQLSDFRDLYVPIL 219
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BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Match: A0A2P2I9T9_9CRUS (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I9T9_9CRUS)

HSP 1 Score: 50.1 bits (118), Expect = 1.290e-5
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   46 AGDFRMYFGENPDKVKNIVRGTLGRFQELYAPAL 147
            AGDFRMY GE+P+KV+NIV   L  F+ LYAP L
Sbjct:  179 AGDFRMYVGEDPNKVRNIVAAQLQEFRSLYAPIL 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91270.20690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS1_ECTSI9.080e-1382.05Phosphatidate cytidylyltransferase, mitochondrial ... [more]
W4GAX7_9STRA1.960e-650.00Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A6G0XJ12_9STRA2.630e-652.27Phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI000C6CF1DF5.080e-647.27phosphatidate cytidylyltransferase, mitochondrial-... [more]
A0A5D6YZU9_9STRA6.880e-664.71Phosphatidate cytidylyltransferase, mitochondrial ... [more]
W7TRJ7_9STRA7.020e-669.70Phosphatidate cytidylyltransferase, mitochondrial ... [more]
B0WG01_CULQU9.490e-667.65Phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI000C201DF89.510e-658.33phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A8J5AZB8_9DIPT1.290e-567.65Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A2P2I9T9_9CRUS1.290e-564.71Phosphatidate cytidylyltransferase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91270contigEcto-sp13_S_contig91270:167..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score69.7
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog2880.D7FQS1
Preferred nameTAMM41
Model size168
KEGG koko:K17807,ko:K21121
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0070013,GO:0070567,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons1
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsKOG2986@1,KOG2986@2759
EC2.3.1.259
Cds size168
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464184.4405136-CDS-Ecto-sp13_S_contig91270:166..3341681464184.4405136-CDS-Ecto-sp13_S_contig91270:166..334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91270 167..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91270.20690.1prot_Ecto-sp13_S_contig91270.20690.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91270 167..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91270.20690.1

>prot_Ecto-sp13_S_contig91270.20690.1 ID=prot_Ecto-sp13_S_contig91270.20690.1|Name=mRNA_Ecto-sp13_S_contig91270.20690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
LTLDALISKVWNRFPAGDFRMYFGENPDKVKNIVRGTLGRFQELYAPALK
VKKGLH
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mRNA from alignment at Ecto-sp13_S_contig91270:167..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91270.20690.1 ID=mRNA_Ecto-sp13_S_contig91270.20690.1|Name=mRNA_Ecto-sp13_S_contig91270.20690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91270:167..334+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAACACTGGATGCCCTTATCTCTAAGGTTTGGAATCGCTTCCCCGCAGG
CGATTTCCGCATGTACTTTGGCGAGAACCCGGACAAGGTCAAAAACATCG
TCAGAGGCACCCTAGGAAGGTTCCAAGAACTGTATGCGCCGGCCCTCAAG
GTGAAAAAAGGCCTTCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91270:167..334+

>mRNA_Ecto-sp13_S_contig91270.20690.1 ID=mRNA_Ecto-sp13_S_contig91270.20690.1|Name=mRNA_Ecto-sp13_S_contig91270.20690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91270:167..334+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAACACTGGATGCCCTTATCTCTAAGGTTTGGAATCGCTTCCCCGCAGG
CGATTTCCGCATGTACTTTGGCGAGAACCCGGACAAGGTCAAAAACATCG
TCAGAGGCACCCTAGGAAGGTTCCAAGAACTGTATGCGCCGGCCCTCAAG
GTGAAAAAAGGCCTTCAT
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