mRNA_Ecto-sp13_S_contig912.20681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: W7TNU3_9STRA (Rho gtpase-activating protein 39 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNU3_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.680e-18 Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 3
Query: 51 DVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLA-----LPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLI 407
D VVADLLK WLR +REPLVP Y RA+ AG Q + + LA LP N+ATL +L F + A+ + N+M + LA+V SPNLLR+P DP++ +NA E FV L+
Sbjct: 901 DPMVVADLLKAWLRHLREPLVPLQHYRRALDAG---------QAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNAENERKFVIQLM 1015
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: I2CS72_NANGC (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS72_NANGC) HSP 1 Score: 84.3 bits (207), Expect = 9.830e-18 Identity = 49/110 (44.55%), Postives = 65/110 (59.09%), Query Frame = 3
Query: 60 VVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLA-----LPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNA 374
VVADLLK WLR +REPLVP Y RA+ AG Q + + LA LP N+ATL +L F + A+ + N+M + LA+V SPNLLR+P DP++ +NA
Sbjct: 2 VVADLLKAWLRHLREPLVPLQHYRRALDAG---------QAQDLAPTLAFLDTVLPKANAATLVYLIHFLNHCAELSQFNQMTPRNLAIVFSPNLLRHPSNDPMLMVQNA 102
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: A0A7S1XYP8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYP8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 9.230e-16 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 3
Query: 48 MDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLI 407
M + ADLLK LRSM+EP++P Y+R +A G +G A E+ +M L N ATL + F ++++ +M LA+VL+PNLL+NP DPL+F N+ E FV LI
Sbjct: 33 MTPLIPADLLKQLLRSMKEPIIPYSVYDRCLAIGR--KGDSAA--EAAALMGELRPANRATLYTVISFLAELSKAHDVTQMGVDNLALVLAPNLLKNPSDDPLLFAANSGDERGFVGQLI 148
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: A0A7R9YEW3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEW3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.680e-15 Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 3
Query: 66 ADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLIEGSKQ 422
ADLLK WLR + PL+ Y+ A+ A + + A++ V LP + ATL FL F ++A + N M++ +A+V++PN+LRNP D L+F +NA+ E F+ LI+ Q
Sbjct: 473 ADLLKYWLRKLEPPLIDYPFYDEAIGAARAGDLEGAKE-----VFNKLPPAHRATLRFLCTFLREIAKMREVNMMDSHNIALVIAPNILRNPSNDALLFARNADYEKRFLILLIDACDQ 586
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: A0A7S2R8N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8N6_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 8.830e-14 Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 3
Query: 51 DVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLIEGS 416
DV V A+L+K++LRS++EPL+P Y+ A+ +G ++ A + V+ LP N TL +++A E N+M+ A+V +PN+LR P DP++ +N +E FV L+ S
Sbjct: 876 DVNVAANLIKIFLRSLKEPLIPADLYDEALRSGGENDPAVA-----LEVVRKLPEANVRTLRHCVALMAELASYESVNKMSMDNTAMVFAPNILRIPTNDPMLLARNQESEKRFVLHLVSAS 992
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: A0A3P7NDH8_9BILA (Uncharacterized protein n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A3P7NDH8_9BILA) HSP 1 Score: 76.6 bits (187), Expect = 4.080e-13 Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 3
Query: 6 KLSKGDLPGDEEFEMDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQE--KTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLI 407
+L +G +P D +V A LLK+WLRS+ EPL+P Y R +A + D+ EE+ R++ LP N L L +A++E K +M+ LA+V++PN+LR DP V NA E F+K+LI
Sbjct: 177 RLDRGVVP----VVRDAHVPAALLKLWLRSLPEPLLPDAFYSRCLA--VCDQ-----PEEACRIVELLPAVNRLVLAKLLELLQLLAEEETVKCTKMDVCNLAMVMAPNVLRCGSDDPRVIFDNARREMTFLKTLI 301
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: V5GTH8_ANOGL (Rho GTPase-activating protein 21 (Fragment) n=10 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GTH8_ANOGL) HSP 1 Score: 77.0 bits (188), Expect = 7.440e-13 Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query: 21 DLPGDEEFEMDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKN-ANAEANFVKSLIEGS 416
D+P ++ D++VV+ LLK + R M E LV Y + A +++ K R EE R++ +LP N TL +L +VAD K N+M AK LA+V P ++R PEG+ + N N + ++SLI +
Sbjct: 220 DVPLEDPRWNDLHVVSSLLKSYFRKMPESLVTDQLYPNFIKADKIEDPK-LRMEELKRLVRSLPKHNYHTLKYLIMHLKRVADNSKVNKMEAKNLAIVFGPTIVR-PEGENMENMVNHMNNQCKIIESLISNA 350
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: V5GPN2_ANOGL (Rho GTPase-activating protein 21 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GPN2_ANOGL) HSP 1 Score: 77.0 bits (188), Expect = 7.460e-13 Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 3
Query: 21 DLPGDEEFEMDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKN-ANAEANFVKSLIEGS 416
D+P ++ D++VV+ LLK + R M E LV Y + A +++ K R EE R++ +LP N TL +L +VAD K N+M AK LA+V P ++R PEG+ + N N + ++SLI +
Sbjct: 232 DVPLEDPRWNDLHVVSSLLKSYFRKMPESLVTDQLYPNFIKADKIEDPK-LRMEELKRLVRSLPKHNYHTLKYLIMHLKRVADNSKVNKMEAKNLAIVFGPTIVR-PEGENMENMVNHMNNQCKIIESLISNA 362
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: A0A183E3V2_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183E3V2_9BILA) HSP 1 Score: 76.6 bits (187), Expect = 8.820e-13 Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 3
Query: 6 KLSKGDLPGDEEFEMDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVMLALPLPNSATLDFLARFFSKVADQE--KTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLI 407
+L +G +P D +V A LLK+WLRS+ EPL+P Y R +A + D+ EE+ R++ LP N L L +A++E K +M+ LA+V++PN+LR DP V NA E F+K+LI
Sbjct: 409 RLDRGVVP----VVRDAHVPAALLKLWLRSLPEPLLPDAFYSRCLA--VCDQ-----PEEACRIVELLPAVNRLVLAKLLELLQLLAEEETVKCTKMDVCNLAMVMAPNVLRCGSDDPRVIFDNARREMTFLKTLI 533
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Match: UPI001CF22AA9 (rho GTPase-activating protein 24-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF22AA9) HSP 1 Score: 76.3 bits (186), Expect = 1.090e-12 Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 3
Query: 9 LSKGDLPGDEEFEMDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVML-ALPLPNSATLDFLARFFSKVADQEKTNRMNAKGLAVVLSPNLLRNPEGDPLVFKKNANAEANFVKSLI 407
+KG P E +V+ VA +LK + R + EPL+P +E + A E +E +++ L LP PN + L FL RF +V + N+MNA+ LA+V PN+LR+ DP V ++ N + LI
Sbjct: 189 FNKGKNPELESTRTEVHSVASVLKSYFRELPEPLIPYDYFEVFLTAARCYEMREEDGIIAVQNQLKTLPQPNYSLLRFLCRFLHEVQKHCEQNKMNARNLAMVFGPNILRSGSEDPKVMMESTNLVTELISILI 322 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig912.20681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig912.20681.1 >prot_Ecto-sp13_S_contig912.20681.1 ID=prot_Ecto-sp13_S_contig912.20681.1|Name=mRNA_Ecto-sp13_S_contig912.20681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp MDVYVVADLLKMWLRSMREPLVPPGSYERAVAAGLVDEGKEARQEESMRVback to top mRNA from alignment at Ecto-sp13_S_contig912:9385..13322- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig912.20681.1 ID=mRNA_Ecto-sp13_S_contig912.20681.1|Name=mRNA_Ecto-sp13_S_contig912.20681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3938bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:9385..13322- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig912:9385..13322- >mRNA_Ecto-sp13_S_contig912.20681.1 ID=mRNA_Ecto-sp13_S_contig912.20681.1|Name=mRNA_Ecto-sp13_S_contig912.20681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:9385..13322- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |