prot_Ecto-sp13_S_contig9085.20643.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9085.20643.1
Unique Nameprot_Ecto-sp13_S_contig9085.20643.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length174
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9085.20643.1 vs. uniprot
Match: D8LC38_ECTSI (Casc1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC38_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.850e-53
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0 
Query:    1 MGPKKKKSKAQKEAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLRRAEKLEVVQSSWETYTKCDPRPDAASEKALNTFLSQGADEEVPELEQAMERCVYGESIAADLLNDIGLSLENGDISRMARNEKFLEVLRGLS 174
            +GPKKKKSKAQKEAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ERLR AEKLE VQSSWETYTKCDPRPDAASEKALNTFLSQGADEEVPEL+QAMERCVYGESIAADLLNDIG SLENGDISRMARNE+FLE+LRGLS
Sbjct:    4 VGPKKKKSKAQKEAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKERLRWAEKLEAVQSSWETYTKCDPRPDAASEKALNTFLSQGADEEVPELDQAMERCVYGESIAADLLNDIGQSLENGDISRMARNEEFLELLRGLS 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9085.20643.1 vs. uniprot
Match: A0A6H5J7X6_9PHAE (Casc1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X6_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.980e-49
Identity = 89/103 (86.41%), Postives = 90/103 (87.38%), Query Frame = 0 
Query:   79 ERLRRAEKLEVVQSSWETYTKCDPRPDAASEKALNTFLSQGADEEV-------PELEQAMERCVYGESIAADLLNDIGLSLENGDISRMARNEKFLEVLRGLS 174
            ERLR AEKLE VQSSWETYTKCDPRPD ASEKALNTFLSQGADEE         ELEQAMERCVYGESIAADLLNDIG SLENGDISRMARNEKFLE+LRGLS
Sbjct:   15 ERLRWAEKLEAVQSSWETYTKCDPRPDTASEKALNTFLSQGADEEARANTTESTELEQAMERCVYGESIAADLLNDIGQSLENGDISRMARNEKFLELLRGLS 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9085.20643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC38_ECTSI2.850e-5395.40Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J7X6_9PHAE1.980e-4986.41Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..87
IPR031826Cancer susceptibility candidate 1, N-terminalPFAMPF15927Casc1_Ncoord: 30..173
e-value: 3.1E-24
score: 85.8
IPR023247Cancer susceptibility candidate protein 1PANTHERPTHR20929LUNG ADENOMA SUSCEPTIBILITY 1-RELATEDcoord: 3..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9085contigEcto-sp13_S_contig9085:2379..5376 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9085.20643.1mRNA_Ecto-sp13_S_contig9085.20643.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9085 2379..6243 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9085.20643.1 ID=prot_Ecto-sp13_S_contig9085.20643.1|Name=mRNA_Ecto-sp13_S_contig9085.20643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MGPKKKKSKAQKEAERLQAEEEERKAEILRAKREAERIRKEAEDVKILKE
EQIADRTEELERLSNELQEAQDQIAETKERLRRAEKLEVVQSSWETYTKC
DPRPDAASEKALNTFLSQGADEEVPELEQAMERCVYGESIAADLLNDIGL
SLENGDISRMARNEKFLEVLRGLS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031826Casc1_N
IPR023247Casc1