mRNA_Ecto-sp13_S_contig12485.2064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12485.2064.1
Unique NamemRNA_Ecto-sp13_S_contig12485.2064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12485.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12485contigEcto-sp13_S_contig12485:1783..2155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size373
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.575403-UTR-Ecto-sp13_S_contig12485:1782..17841681462665.575403-UTR-Ecto-sp13_S_contig12485:1782..1784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12485 1783..1784 +
1681462665.5967221-UTR-Ecto-sp13_S_contig12485:2153..21551681462665.5967221-UTR-Ecto-sp13_S_contig12485:2153..2155Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12485 2154..2155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.5853658-CDS-Ecto-sp13_S_contig12485:1784..21531681462665.5853658-CDS-Ecto-sp13_S_contig12485:1784..2153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12485 1785..2153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12485.2064.1prot_Ecto-sp13_S_contig12485.2064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12485 1785..2153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12485.2064.1

>prot_Ecto-sp13_S_contig12485.2064.1 ID=prot_Ecto-sp13_S_contig12485.2064.1|Name=mRNA_Ecto-sp13_S_contig12485.2064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MHGLAPGRSGGMGCGDMIGRRRTKMLRPSLPPGASLGRHEERRIAMVRVQ
ALLACRSRGEKSEPPSTDVGRFGRSEPFFYDRRWEIREICTLFIKKQIHN
ADIYCMHRLFFYNSLALSPPVK*
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mRNA from alignment at Ecto-sp13_S_contig12485:1783..2155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12485.2064.1 ID=mRNA_Ecto-sp13_S_contig12485.2064.1|Name=mRNA_Ecto-sp13_S_contig12485.2064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=373bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12485:1783..2155+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATGCATGGTCTGGCGCCAGGCCGTTCTGGCGGGATGGGGTGCGGAGAC
ATGATAGGACGTCGCCGGACGAAGATGCTACGCCCCTCCCTCCCGCCTGG
AGCTAGTTTAGGTCGTCACGAAGAACGAAGAATTGCGATGGTAAGGGTGC
AGGCCTTGCTTGCTTGTCGCTCACGCGGTGAAAAGAGTGAGCCGCCCTCG
ACAGACGTGGGGAGATTTGGGAGATCTGAACCCTTTTTTTACGACAGACG
TTGGGAGATTCGGGAGATTTGTACCCTTTTTATAAAGAAGCAGATCCACA
ACGCTGATATCTACTGCATGCATAGGCTATTTTTTTACAATTCTTTGGCG
TTAAGCCCCCCCGTGAAGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12485:1783..2155+

>mRNA_Ecto-sp13_S_contig12485.2064.1 ID=mRNA_Ecto-sp13_S_contig12485.2064.1|Name=mRNA_Ecto-sp13_S_contig12485.2064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12485:1783..2155+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGGTCTGGCGCCAGGCCGTTCTGGCGGGATGGGGTGCGGAGACAT
GATAGGACGTCGCCGGACGAAGATGCTACGCCCCTCCCTCCCGCCTGGAG
CTAGTTTAGGTCGTCACGAAGAACGAAGAATTGCGATGGTAAGGGTGCAG
GCCTTGCTTGCTTGTCGCTCACGCGGTGAAAAGAGTGAGCCGCCCTCGAC
AGACGTGGGGAGATTTGGGAGATCTGAACCCTTTTTTTACGACAGACGTT
GGGAGATTCGGGAGATTTGTACCCTTTTTATAAAGAAGCAGATCCACAAC
GCTGATATCTACTGCATGCATAGGCTATTTTTTTACAATTCTTTGGCGTT
AAGCCCCCCCGTGAAGTGA
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