prot_Ecto-sp13_S_contig1248.2058.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1248.2058.1
Unique Nameprot_Ecto-sp13_S_contig1248.2058.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length1056
Homology
BLAST of mRNA_Ecto-sp13_S_contig1248.2058.1 vs. uniprot
Match: A0A6H5KB32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB32_9PHAE)

HSP 1 Score: 1050 bits (2714), Expect = 0.000e+0
Identity = 714/955 (74.76%), Postives = 730/955 (76.44%), Query Frame = 0
Query:  125 REQGGEGARLHAYQLVSSEPRLLLLRAEPELSGRLWFLLDMLPSLRGSWSARLRRAAPLLAIESSALQSRLEGLADLFPPDADLQ---------AIVNQTPLLLRHRTEKMSEALANIERLVPGLRMDRVLRSAPQLLVQPMDVVEKRLAQLRAVLGLTPSPELERMRISLEPNSSSDVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLKELMMDQSL-PRQRRGQQETSTMQ------------QANGADASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSRAFAEHAGGXXXXXXXXXXXXXXXXXXXXXXX-MMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSTLKEAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXGAPMLLALSEKTLRVKRDAWRSILEDRVDVPWEQVVADFPQLLCQGLGRAARVPFLLLDDPPTAASAATMAVSRDHPGDDSERVVTTALAMVAAGGVGDEVLPTTHAPGVASDGVAAGDGVGAAXXXXXXG-SWRSGVEKERSAGGGVDGGSGVAPRTMSAAAACREICRRVSDFESDHPSYPCFLDSLLVAAAGHRAAGDSGXXXXXAGASRGVARVEEEGEGAVVGSSAPATMSLGRGCDGVAAGVRGVQGAVTGNQRQQRYRWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNSSRPPPQPVPIPLPSTPLPPSAPSAGEARVAVKSEKALGAAMAEAARGPGGXXXXAAMLISPEAEMQDRSGRSGLP 1055
            REQGGEGARLHAYQLVSSEPRLLLLRAEPELSGRL FLL+MLPSLRGSWSARLRRAAPLLAIESSALQSRLEGLADLFPPDADLQ         AIVNQTPLLLRHRTEK+SEALANIERLVPGLRMDRVLRSAPQLLVQP+DVVEKRLAQLRAVL LTPSPE+ERMRI+LEPN+SSDVS                                        RPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRL+ELMMDQSL P+QRRGQQETSTM             +A G DASDDLVAAVARCPSLLTLSS+TSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLS AFAE AGGXXXXXXXXXXXXXXXXXXXXXXX MMAQTLRYNPNALRFDPATLARKL VLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVS L+EAFPSVPLSRLLGEAPCLLQKTIDPVAK XXXXXXXXXXXXXXXXX   MLLALSEKTLRVKRDAWRSI+EDRVDVPWEQVVADFPQLLCQG GRAARVPFLLLD                      ERVVTTA+AMVAAGG+GDEVL  THAPGVASDGVAAGDGVGAA      G SWRSGV KERSAGGGVDGGSGVAPRTMSAAAACRE+CRRVSDFESDHP YPCFLDSLLVAA                                                                                                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RD+SSRPPPQPVPIPLPSTPLPPSAPSAGEARVAVKSEKALGAAMAE ARGPGGXXXX  MLI PEAEMQD SGRSGLP
Sbjct:   62 REQGGEGARLHAYQLVSSEPRLLLLRAEPELSGRLRFLLEMLPSLRGSWSARLRRAAPLLAIESSALQSRLEGLADLFPPDADLQVGAGLFIGGAIVNQTPLLLRHRTEKVSEALANIERLVPGLRMDRVLRSAPQLLVQPLDVVEKRLAQLRAVLCLTPSPEVERMRITLEPNNSSDVS---------IESDSGSGRRGGGDRDDDIGSRGGGRVGGGGRPAGVRRLARFANGFPQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLAPQQRRGQQETSTMVGGALRLRTFFLLRAKGTDASDDLVAAVARCPSLLTLSSNTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSHAFAELAGGXXXXXXXXXXXXXXXXXXXXXXXXMMAQTLRYNPNALRFDPATLARKLEVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKXXXXXXXXXXXXXXXXXXXXXMLLALSEKTLRVKRDAWRSIVEDRVDVPWEQVVADFPQLLCQGFGRAARVPFLLLDXXXXXXXXXXXXXXXXXXXXXGERVVTTAVAMVAAGGLGDEVLRATHAPGVASDGVAAGDGVGAAAAAAAGGDSWRSGVGKERSAGGGVDGGSGVAPRTMSAAAACREVCRRVSDFESDHPGYPCFLDSLLVAAX----------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSSRDHSSRPPPQPVPIPLPSTPLPPSAPSAGEARVAVKSEKALGAAMAEVARGPGGXXXXXXMLIPPEAEMQDNSGRSGLP 901          
BLAST of mRNA_Ecto-sp13_S_contig1248.2058.1 vs. uniprot
Match: D7G2Q0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q0_ECTSI)

HSP 1 Score: 656 bits (1693), Expect = 3.030e-224
Identity = 418/465 (89.89%), Postives = 426/465 (91.61%), Query Frame = 0
Query:  356 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLKELMMDQSLPRQRR-------GQQETSTMQQANGADASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSRAFAEHAGGXXXXXXXXXXXXXXXXXXXXXXXMMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSTLKEAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXGAPMLLALSEKTLRVKRDAWRSILEDRVDVPWEQVVADFPQLLCQGLGRAARVPFLLLDDPPTAASAATMAVSRDHPGDDSERVVTTALAMVAAGGVGDEVLPTTHAPGVASDGVAAGDGVGAAXXXXXXG--SWRSGVEKERSAGGGVDGGSGVAPRTMSAAAACREICRRV 811
            MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRL+ELMMDQSLP Q+R       GQQETS M  ANG DASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDM STVPRKLADL+RAF EHAGGXXXXXXXXXXXXXXXXXXXXXX MMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVS L+EAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXX   MLLALSE TLRVKRDAWRSILE+RVDVPWEQVVADFPQLLCQGLGRAARVPFLLLDDPP  AS  TMAVSR  PG DS+RVV TA AMVAA GVGDEVLP THAPGVASDGVAAGDGVGA XXXXXX   SW SGV KERS GGGVDGGSGVAPRTMSAAAA REICR++
Sbjct:    1 MEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKVSRLRELMMDQSLPPQQRRGQQPGRGQQETSNM--ANGTDASDDLVAAVARCPSLLTLSSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMTSTVPRKLADLARAFTEHAGGXXXXXXXXXXXXXXXXXXXXXXVMMAQTLRYNPNALRFDPATLARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSALREAFPSVPLSRLLGEAPCLLQKTIDPVAKIXXXXXXXXXXXXXXXXXXXXMLLALSENTLRVKRDAWRSILENRVDVPWEQVVADFPQLLCQGLGRAARVPFLLLDDPPAVAST-TMAVSRAPPGRDSDRVVATAAAMVAAEGVGDEVLPATHAPGVASDGVAAGDGVGAXXXXXXXXXXSWSSGVGKERSVGGGVDGGSGVAPRTMSAAAAFREICRQL 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1248.2058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB32_9PHAE0.000e+074.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Q0_ECTSI3.030e-22489.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 243..274
e-value: 410.0
score: 6.9
coord: 378..409
e-value: 110.0
score: 11.5
coord: 534..564
e-value: 630.0
score: 5.5
coord: 636..666
e-value: 3000.0
score: 0.1
coord: 438..468
e-value: 1500.0
score: 2.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 530..698
e-value: 4.6E-7
score: 31.3
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 230..685

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1248contigEcto-sp13_S_contig1248:6529..12850 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1248.2058.1mRNA_Ecto-sp13_S_contig1248.2058.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1248 6529..12850 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1248.2058.1 ID=prot_Ecto-sp13_S_contig1248.2058.1|Name=mRNA_Ecto-sp13_S_contig1248.2058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1056bp
GVTHGGGSPSSSSPTKATEIRHVGGSRSNSSRSSSSSRGDSSQEQQNDDR
NRQGAQATVRVAAVLLPDSGSGGIDGGYYESRAAGGGVQEGESRPPSSSS
AVAATVAARERGGATGEGEVAAAAREQGGEGARLHAYQLVSSEPRLLLLR
AEPELSGRLWFLLDMLPSLRGSWSARLRRAAPLLAIESSALQSRLEGLAD
LFPPDADLQAIVNQTPLLLRHRTEKMSEALANIERLVPGLRMDRVLRSAP
QLLVQPMDVVEKRLAQLRAVLGLTPSPELERMRISLEPNSSSDVSKDSGS
GSGRSGGGDRDDDIGNGGGGGRGGGGGGGGGGGGGRPAGVRRLARFANGF
PQILTMEPHTVRAKIEGLEALLPGMDGLALVGSRPHLLGFDVRRNVSLKV
SRLKELMMDQSLPRQRRGQQETSTMQQANGADASDDLVAAVARCPSLLTL
SSDTSMRKVEKLQEALPSGLVARTIVAKEPRVMSLDMASTVPRKLADLSR
AFAEHAGGAATAAGGGDSGSGYDDDEAAAAVMMAQTLRYNPNALRFDPAT
LARKLGVLRGAGLSAETVCRVVGGAPRCLSAAAGTLEARVSTLKEAFPSV
PLSRLLGEAPCLLQKTIDPVAKIEVLQELFPSLDPVLLVEGAPMLLALSE
KTLRVKRDAWRSILEDRVDVPWEQVVADFPQLLCQGLGRAARVPFLLLDD
PPTAASAATMAVSRDHPGDDSERVVTTALAMVAAGGVGDEVLPTTHAPGV
ASDGVAAGDGVGAAAAAAGGGSWRSGVEKERSAGGGVDGGSGVAPRTMSA
AAACREICRRVSDFESDHPSYPCFLDSLLVAAAGHRAAGDSGGGDGGAGA
SRGVARVEEEGEGAVVGSSAPATMSLGRGCDGVAAGVRGVQGAVTGNQRQ
QRYRWQQQQRQPQQQQQQPRHHRRPTAASAGGAAATAREEQAADPAVSRR
AGAGVAAAATAAAALVSGREQQQRSSRDNSSRPPPQPVPIPLPSTPLPPS
APSAGEARVAVKSEKALGAAMAEAARGPGGGAAAAAMLISPEAEMQDRSG
RSGLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf