mRNA_Ecto-sp13_S_contig90255.20584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90255.20584.1
Unique NamemRNA_Ecto-sp13_S_contig90255.20584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-22
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:   19 QVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            +VIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV
Sbjct:  452 KVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 499
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A7S3XQ93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ93_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 9.700e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   28 HLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            H L+ LL  HP MKGVV REVQQ+LHRP LQP+AV+A I FLNQ+
Sbjct:   19 HRLRELLRAHPGMKGVVAREVQQFLHRPNLQPRAVHAAIAFLNQM 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A4D9CW61_9STRA (CBF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.500e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   28 HLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            +LL+RLLA HPAMK VV REVQQ+LHRP LQP+ +Y GI FL Q+
Sbjct:  329 YLLRRLLAAHPAMKVVVAREVQQFLHRPNLQPRPLYNGISFLGQL 373
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: D8TLX0_VOLCA (CBF domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TLX0_VOLCA)

HSP 1 Score: 60.1 bits (144), Expect = 3.730e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   19 QVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            + ++LL +LLA HP MK VVVREV++++ RPGL  KA Y  ++FLNQV
Sbjct:  445 KAVYLLMQLLATHPVMKPVVVREVERFVFRPGLADKARYYAVVFLNQV 492
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A059LL30_9CHLO (CBF/Mak21 family protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LL30_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 6.960e-9
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   31 LLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVM 165
            LL +LL++HPAMKGVVVREV++ L RP LQ +A Y G+I LNQ++
Sbjct:  227 LLSQLLSQHPAMKGVVVREVERLLFRPNLQERARYYGVIALNQMV 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A7R9V1C5_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1C5_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-9
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   31 LLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            LL +LL +HPAMK VVVREV+++L RPGLQ  A Y  I+FLNQ+
Sbjct:  273 LLSQLLLQHPAMKPVVVREVERFLFRPGLQESARYFSIVFLNQL 316
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: I0Z243_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z243_COCSC)

HSP 1 Score: 57.8 bits (138), Expect = 2.370e-8
Identity = 26/45 (57.78%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   28 HLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            +LL+ +L +HPAMK V+ REV+++L RPGLQ +A Y G+IFLNQ+
Sbjct:  179 YLLRGVLEEHPAMKVVMAREVERFLFRPGLQERARYYGVIFLNQM 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A250XCW4_9CHLO (CBF domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCW4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-8
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   28 HLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVM 165
            +LL +LL  HPAMK VV+REV+++L RPGLQ +A Y  ++FLNQ++
Sbjct:  361 YLLGQLLLTHPAMKPVVLREVERFLFRPGLQERARYYAVVFLNQMV 406
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-8
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   73 VVVREVQQYLHRPGLQPKAVYAGIIFLNQV 162
            VVVREVQQYLHRPGL PKA+YAG++FL+QV
Sbjct:  472 VVVREVQQYLHRPGLAPKALYAGVVFLSQV 501
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Match: A0A3M7KZN0_AUXPR (CBF domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZN0_AUXPR)

HSP 1 Score: 57.4 bits (137), Expect = 3.330e-8
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   31 LLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQVM 165
            LL RLL +HP MK VVVREV++++ RPGLQ +A Y  +++LNQ++
Sbjct:  306 LLSRLLTEHPMMKVVVVREVERFMFRPGLQDRARYYAVVYLNQMV 350
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90255.20584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI3.660e-2297.92CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XQ93_HETAK9.700e-1368.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CW61_9STRA2.500e-1168.89CBF domain-containing protein n=2 Tax=Monodopsidac... [more]
D8TLX0_VOLCA3.730e-956.25CBF domain-containing protein n=1 Tax=Volvox carte... [more]
A0A059LL30_9CHLO6.960e-962.22CBF/Mak21 family protein (Fragment) n=1 Tax=Helico... [more]
A0A7R9V1C5_9CHLO9.520e-963.64Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
I0Z243_COCSC2.370e-857.78Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A250XCW4_9CHLO2.440e-856.52CBF domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A835ZC94_9STRA2.440e-883.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M7KZN0_AUXPR3.330e-855.56CBF domain-containing protein n=4 Tax=Auxenochlore... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90255contigEcto-sp13_S_contig90255:15..179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.5
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
Model size165
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
Cds size165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464176.0651114-CDS-Ecto-sp13_S_contig90255:14..1791681464176.0651114-CDS-Ecto-sp13_S_contig90255:14..179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90255 15..179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90255.20584.1prot_Ecto-sp13_S_contig90255.20584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90255 15..179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90255.20584.1

>prot_Ecto-sp13_S_contig90255.20584.1 ID=prot_Ecto-sp13_S_contig90255.20584.1|Name=mRNA_Ecto-sp13_S_contig90255.20584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
SSTFYLQVIHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIF
LNQVM
back to top

mRNA from alignment at Ecto-sp13_S_contig90255:15..179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90255.20584.1 ID=mRNA_Ecto-sp13_S_contig90255.20584.1|Name=mRNA_Ecto-sp13_S_contig90255.20584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90255:15..179+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTACATTCTACCTCCAGGTAATTCACCTGTTGCAGAGGCTTCTGGC
GAAGCACCCGGCCATGAAAGGGGTGGTCGTGAGGGAGGTGCAGCAGTACC
TCCACAGACCGGGTCTGCAGCCCAAGGCCGTCTACGCTGGTATCATCTTC
CTCAACCAGGTGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90255:15..179+

>mRNA_Ecto-sp13_S_contig90255.20584.1 ID=mRNA_Ecto-sp13_S_contig90255.20584.1|Name=mRNA_Ecto-sp13_S_contig90255.20584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90255:15..179+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTACATTCTACCTCCAGGTAATTCACCTGTTGCAGAGGCTTCTGGC
GAAGCACCCGGCCATGAAAGGGGTGGTCGTGAGGGAGGTGCAGCAGTACC
TCCACAGACCGGGTCTGCAGCCCAAGGCCGTCTACGCTGGTATCATCTTC
CTCAACCAGGTGATG
back to top