mRNA_Ecto-sp13_S_contig1248.2057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1248.2057.1
Unique NamemRNA_Ecto-sp13_S_contig1248.2057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: D7G2P9_ECTSI (ATP synthase: assembly factor for F1 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P9_ECTSI)

HSP 1 Score: 606 bits (1562), Expect = 2.190e-212
Identity = 337/397 (84.89%), Postives = 342/397 (86.15%), Query Frame = 1
Query:   58 MASSSRTCRPLPALKTLARGRWLASGKMQADDRHVVPLAARAFVSYSHVSQPRAKAPSSVVVGCAATWQQALSTSAVGDGEDVG-QKGNNNRREDGDGGEATDDGAVAAERRDGSASGVTAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXXDRGRASGGEQGKRSKKRGSSSLNSTTMSQARHWGGRP 1245
            MASSSRTCR  PA+KTL +GRWLA GKMQADDR VVPLAARAFVSY H  QPRAKAP S  VGCAA W+QALSTSAVGDGEDVG QKGN                    ERRDGSASG TAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVL GRVTMVGLFHRQFGYSMLESWTGPFEE FARGQRG+KLPSAGGK TGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXX           K  KKRG+SSLN T  SQ RH GGRP
Sbjct:    1 MASSSRTCRRFPAVKTLGQGRWLALGKMQADDRRVVPLAARAFVSYDHALQPRAKAPPSAAVGCAAAWKQALSTSAVGDGEDVGSQKGNXXXXXXXXXXXXXXXXXXXXERRDGSASGETAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLAGRVTMVGLFHRQFGYSMLESWTGPFEETFARGQRGNKLPSAGGKTTGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXXXXXXXXXXXX-KSKKKRGTSSLNGTARSQERHRGGRP 396          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A6P6X895_COFAR (mitochondrial ATPase complex subunit ATP10-like isoform X1 n=7 Tax=Coffea TaxID=13442 RepID=A0A6P6X895_COFAR)

HSP 1 Score: 100 bits (249), Expect = 7.230e-20
Identity = 73/225 (32.44%), Postives = 109/225 (48.44%), Query Frame = 1
Query:  478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVS---------NLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            ++  G F +F  + K GGKI  A++ +IP   A  FPA+EV+          + S G+ ++A ++D        + +++ L  R    +M+ SW+ PF + F   +                      +SL+ESW LR   +K LL+  M +    +KK        Y FG     RK L I+N LT YV L+D+ GR+RWQG G ATP+EV SL+ C   L  E
Sbjct:   75 EMSRGYFADFGEMKKHGGKIAMANKIIIPAMAATKFPALEVNFSDGSSLKLPITSSGNGSSADKLD------VPKASLLCLSFRGSSQAMINSWSKPFLDEFCSSKE----------------TQLFEVSLIESWLLRRNPIKKLLLRIMKKPSPDDKKNVLQRQIVYSFGDHYYFRKELNILNLLTGYVFLLDKFGRIRWQGFGSATPEEVSSLLACTALLLEE 277          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A8J9SHZ6_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SHZ6_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 3.120e-19
Identity = 72/220 (32.73%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLES-----WPLRMMKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 1110
            +++ G F +F  + +T G++F+AS +L P   +   PAM V      G A    EV F     + RV ++ +  R      L+SW+ P+ +   +G  G +                  LSL+ES     WP + M  +L S +    +P +         + FG   E+R+ALG+ NRLT Y  L+D KGRVRW+G+G+AT  E E+LV CAR+L + G
Sbjct:   22 EMKRGYFDDFKDLKETQGRMFQASEQLSPAGTSPHLPAMAV---MEPGGA----EVMFPPPQGSLRVALLCIAFRAGAEDKLQSWSEPYRDGL-QGCTGARW---------------FDLSLVESPVMSIWPFKQM--ILRSGVTGPAAPSEVCLLQREPIFHFGDATEIRRALGMTNRLTGYAYLIDGKGRVRWRGSGQATAAEAENLVSCARELHSAG 216          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: I0YQS6_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQS6_COCSC)

HSP 1 Score: 96.3 bits (238), Expect = 3.420e-19
Identity = 70/219 (31.96%), Postives = 109/219 (49.77%), Query Frame = 1
Query:  481 VELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLES-----WPLRMMKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 1110
            ++ G F +F  + +T G++F+AS +L P   +   P M V      G A    EV F     + RV ++ +  R      L SW+ PF EA  +G+ G +                  +SL+ES     WP + M  +L S + +  +P +         + FG   E+R+ LG+ NRLT Y  L+D KGRVRW+G+G+AT  E E+LV C+++L + G
Sbjct:    1 MKRGYFDDFKDLKETQGRMFQASEQLSPAGTSPHLPPMAV---VEPGGA----EVLFPPSQDSMRVGLLCIAFRAGAEDKLRSWSEPFREAM-QGRSGARW---------------FDMSLVESVVMRIWPFKQM--ILRSGLTKPTAPAEACQLQPEHIFHFGDATEIRRVLGMTNRLTGYAYLIDGKGRVRWRGSGQATAAEAENLVACSKELLSGG 194          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI00098E00BB (uncharacterized protein LOC109845377 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E00BB)

HSP 1 Score: 96.3 bits (238), Expect = 1.450e-18
Identity = 71/219 (32.42%), Postives = 112/219 (51.14%), Query Frame = 1
Query:  466 KQRVDVEL--GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAA-ASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            K R+  EL  G F + + + K GGKI  A++ LIP  +A  FP +EV NL++  S     +  +  + +     +++ L  R    +M+ESW+ PF  AF                  +A      +S ++SW L +  ++ + +  M +  SP+++    Y FG    +RK L I+N LT Y+ L+D+ GR+RWQG G AT +EV SL+ CA  L  E
Sbjct:   60 KARLSDELSRGYFADISEIRKNGGKIAMANKTLIPLLEAIKFPDLEV-NLSNGSSLKLPVTSGESTAHIDAPLASLLCLSFRASSQTMVESWSVPFVHAF----------------NDSAEVQVYEVSFVDSWLLSLGPVRKMFIKMMKKSASPQRQIV--YSFGDHYYLRKKLQILNLLTGYIFLLDRFGRIRWQGFGLATGEEVSSLLSCALLLLEE 259          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI001929996E (uncharacterized protein LOC120261176 isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929996E)

HSP 1 Score: 95.5 bits (236), Expect = 2.410e-18
Identity = 78/221 (35.29%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  466 KQRVDVEL--GTFHEFTAVNKTGGK-IFEASRELIPEKDAEFFPAMEVSNLASDGSAAA--ASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            K R+  EL  G F + + + K GGK I  A++ +IP   A  FP +EVS   SDG +     S    ++      V++V L  R    +M ESWT PF +AF          S  GK           +S ++SW L +  ++ L +  M +   P++     Y FG   ++RK L I+N LT Y+ L+DQ GRVRWQG G AT DE+ SL+ C   L  E
Sbjct:   54 KARISDELSRGYFADISEIRKNGGKQIAMANKTVIPSMAAVKFPDVEVS--FSDGRSLRLPVSSEQAVTDASDVGVSLVCLSFRANSQAMAESWTAPFLDAF----------STSGKV------QVYEVSFIDSWLLSLAPVRKLFLKVMKKSNIPQRHIV--YSFGDHYDLRKKLQILNLLTGYIFLLDQLGRVRWQGFGFATQDELSSLLTCTSFLLNE 254          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI0012485AC6 (uncharacterized protein LOC115980211 isoform X2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012485AC6)

HSP 1 Score: 94.4 bits (233), Expect = 4.610e-18
Identity = 70/225 (31.11%), Postives = 114/225 (50.67%), Query Frame = 1
Query:  466 KQRVDVEL--GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAA-----AASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGR--GLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            K  +D E+  G F + + +N+ GGKI  A++ +IP   A  FP +EV+   SDG+       +  E+  + +    + +++ L  R    +M++SW+GPF +AF+  +                      +S ++SW LR+  +K LL+  M +  G     +    Y FG     RK L ++N LT Y+ L+D+ GR+RWQG G AT +E+ SL+ CA  L  E
Sbjct:   35 KSVLDYEMNRGYFADISELNQHGGKIAMANKIIIPAMAAVKFPVLEVNY--SDGTTVKLPKTSNGEIVDVDKSAIPKASLICLSFRANSQAMIDSWSGPFIDAFSNSKD----------------VQLYEVSFIDSWFLRLNPIKRLLLRIMKKSNGGKDALQKQIVYSFGDHYYFRKELKVLNLLTGYIFLLDKFGRIRWQGFGLATQEELSSLLSCASLLLEE 241          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A1U7WUZ9_NICSY (uncharacterized protein LOC104230097 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WUZ9_NICSY)

HSP 1 Score: 92.8 bits (229), Expect = 6.630e-18
Identity = 71/218 (32.57%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  490 GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSA------AAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFF----YRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            G F +   + + GGKI  A++ +IP   A  FPA+EVSN  SDGS+      +A + V+  ++    + +++ L  R    +M++SW+ PF + F    R                     +S ++SW L +  +K LL+ TM +    E K        Y FG     RK L I+N LT Y  L+D+ GR+RWQG+G AT +E+ SL+ C   L  E
Sbjct:    4 GYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVSN--SDGSSLKLPITSAGNGVE-ANKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNR----------------VQLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLLLDE 202          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A200R5C4_9MAGN (ATPase assembly factor ATP10 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R5C4_9MAGN)

HSP 1 Score: 94.7 bits (234), Expect = 6.860e-18
Identity = 71/221 (32.13%), Postives = 109/221 (49.32%), Query Frame = 1
Query:  478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGS-----AAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEK----KAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            ++  G F + + + K GGKI  AS  +IP  +A  FP++EV+   SDG+     A +    D   ++     ++V L  R     M++SW+ PF +AF+  +                      +S +ESW L +  +K LL+  M +  +  K    +    Y FG     RK L I+N LT Y+ L+D+ GR+RWQG G AT +E++SLV CA  L  E
Sbjct:   75 EMSRGYFADMSDLKKHGGKIAMASNTIIPAMEAVKFPSLEVNY--SDGTCLNLPATSQENADKPDKMAIPGASLVCLSFRASSQGMIDSWSVPFVDAFSASKN----------------VRIFEVSFIESWFLSLNPIKWLLLRIMRKSKTDGKNDVLQRQLVYSFGDKYYFRKELKILNLLTGYIFLLDRFGRIRWQGFGLATEEELKSLVSCASLLLKE 277          
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A2U1PZI5_ARTAN (ATPase assembly factor ATP10, mitochondria n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZI5_ARTAN)

HSP 1 Score: 94.4 bits (233), Expect = 7.570e-18
Identity = 76/236 (32.20%), Postives = 110/236 (46.61%), Query Frame = 1
Query:  442 DARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEV--SN-------LASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEK---KAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
            DA    R + + ++  G F +   + + GGKI  A++ +IP   A  FP +EV  SN       + S G+   + + D        + TM+ L  R     M +SW+ PF EAF+                G+       +S +ESW L M  ++ LL+  + +    E    +    Y FG     RK L I+N LT Y+ LVD+ GR+RWQG G ATPDEV SL+ C   L  E
Sbjct:   53 DAIEKERARLKDEMNRGYFADMAELKQHGGKIATANKVIIPAMAAVKFPQLEVNYSNGKSFKLPITSYGTDTESVKADI------PKATMMCLSFRAASQEMTDSWSVPFVEAFS----------------GSKKVQLYEISFIESWLLSMTPIRKLLLRVLKKSKPQENGVLQRQIGYAFGDHYYFRKELKILNLLTGYIFLVDKFGRIRWQGFGLATPDEVSSLLSCTSLLLEE 266          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P9_ECTSI2.190e-21284.89ATP synthase: assembly factor for F1 component n=2... [more]
A0A6P6X895_COFAR7.230e-2032.44mitochondrial ATPase complex subunit ATP10-like is... [more]
A0A8J9SHZ6_9CHLO3.120e-1932.73Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
I0YQS6_COCSC3.420e-1931.96Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
UPI00098E00BB1.450e-1832.42uncharacterized protein LOC109845377 n=1 Tax=Aspar... [more]
UPI001929996E2.410e-1835.29uncharacterized protein LOC120261176 isoform X1 n=... [more]
UPI0012485AC64.610e-1831.11uncharacterized protein LOC115980211 isoform X2 n=... [more]
A0A1U7WUZ9_NICSY6.630e-1832.57uncharacterized protein LOC104230097 n=1 Tax=Nicot... [more]
A0A200R5C4_9MAGN6.860e-1832.13ATPase assembly factor ATP10 n=1 Tax=Macleaya cord... [more]
A0A2U1PZI5_ARTAN7.570e-1832.20ATPase assembly factor ATP10, mitochondria n=3 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1248contigEcto-sp13_S_contig1248:877..5211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score611.7
Seed ortholog evalue2.4e-172
Seed eggNOG ortholog2880.D7G2P9
Preferred nameATP10
Model size1846
KEGG koko:K13717,ko:K18192
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051082,GO:0065003,GO:0070071,GO:0071840,GO:0098573
Exons6
EggNOG free text desc.mitochondrial proton-transporting ATP synthase complex assembly
EggNOG OGsKOG4614@1,KOG4614@2759
Ec32 ortholog descriptionATP synthase: assembly factor for F1 component
Ec32 orthologEc-11_003050.1
EC3.4.19.12
Cds size1191
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1248.2057.1prot_Ecto-sp13_S_contig1248.2057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1248 1493..5154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.9702327-UTR-Ecto-sp13_S_contig1248:876..11541681462664.9702327-UTR-Ecto-sp13_S_contig1248:876..1154Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1248 877..1154 -
1681462664.9812396-UTR-Ecto-sp13_S_contig1248:1172..14921681462664.9812396-UTR-Ecto-sp13_S_contig1248:1172..1492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1248 1173..1492 -
1681462665.0492096-UTR-Ecto-sp13_S_contig1248:5154..52111681462665.0492096-UTR-Ecto-sp13_S_contig1248:5154..5211Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1248 5155..5211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.9901693-CDS-Ecto-sp13_S_contig1248:1492..17831681462664.9901693-CDS-Ecto-sp13_S_contig1248:1492..1783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 1493..1783 -
1681462664.9989288-CDS-Ecto-sp13_S_contig1248:2212..23971681462664.9989288-CDS-Ecto-sp13_S_contig1248:2212..2397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 2213..2397 -
1681462665.006727-CDS-Ecto-sp13_S_contig1248:3569..38111681462665.006727-CDS-Ecto-sp13_S_contig1248:3569..3811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 3570..3811 -
1681462665.0229633-CDS-Ecto-sp13_S_contig1248:4376..47191681462665.0229633-CDS-Ecto-sp13_S_contig1248:4376..4719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 4377..4719 -
1681462665.0385785-CDS-Ecto-sp13_S_contig1248:5024..51541681462665.0385785-CDS-Ecto-sp13_S_contig1248:5024..5154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1248 5025..5154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1248.2057.1

>prot_Ecto-sp13_S_contig1248.2057.1 ID=prot_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=397bp
MASSSRTCRPLPALKTLARGRWLASGKMQADDRHVVPLAARAFVSYSHVS
QPRAKAPSSVVVGCAATWQQALSTSAVGDGEDVGQKGNNNRREDGDGGEA
TDDGAVAAERRDGSASGVTAAVPEGVPLDARGMPRPKQRVDVELGTFHEF
TAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLS
RVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPT
GAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEE
VRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE
GSGGGGGSGDRGRASGGEQGKRSKKRGSSSLNSTTMSQARHWGGRP*
back to top

mRNA from alignment at Ecto-sp13_S_contig1248:877..5211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1248.2057.1 ID=mRNA_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:877..5211- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACAGGAGCGTTCTACACCTCTCCTCTGCCCTCTGCTCCCCTACTACGC GGTGGCGATGGCCTCGTCTAGCCGAACCTGCCGCCCCTTACCAGCGTTGA AGACGCTTGCACGAGGAAGATGGCTTGCCTCGGGCAAAATGCAAGCCGAT GACCGCCATGTTGTCCCGCTGGCAGCACGTGCCTTCGGTGAGTTCTTGCT TCGGCTCGGTGAATGGTTTTTTAGATATCGTATCACAGGCCATACTCAAG GCTGCGGCTTCTACTCTGGCTATCTTGCTGCGGCTACGTCTAATGCGTAT CCCGTTGTGGTGCCTTGTGACCATGTGTCAATGAAATAACATTCGCAGCT TCAGAATATCTAAACTGAACCCAGCAAGCGAATTCCCGCCGCAGCTCCTG CACTGGTTCTAACGCCGGCGCCCTCTCCGCCTTCTGCTTCCGCGCCACGT GCACTCTTCCCGCACCGGACCAACAACCCATACGCACAAAAGTGTCCTAT AGTCACGTATCGCAGCCAAGAGCAAAGGCACCATCATCAGTAGTAGTAGG CTGTGCTGCTACCTGGCAACAAGCCCTCTCGACGTCTGCTGTCGGCGATG GCGAGGACGTCGGCCAGAAGGGCAACAACAACCGCAGGGAGGATGGTGAT GGGGGCGAGGCAACCGACGACGGGGCAGTTGCAGCAGAGCGAAGAGACGG CAGCGCTTCGGGAGTGACGGCGGCAGTGCCGGAGGGGGTCCCGCTCGATG CGCGCGGGATGCCGCGGCCGAAGCAACGGGTGGACGTGGAGCTTGGAACC TTTCACGAGTTCACCGCGGTCAACAAGACTGGCGGGTGAGAGGAAAAAGG AATGCCGCAACGCTGCTGTAAAGATTGAAAGGGGGGTACGCGTGGGGCTG CTGCGGATTCGTTACACAGCAGTGCTTCGCTGGGCGATTTGAGGCTTGTA GTTTGGTTCGGGAAACATCGACAACATCAAGCAGCAGCAGCAGCAGCAGC AGCAGGGTTGTTTAGAGAACCCCGTGCCGGGGCCGGGCGATAGCGCGCAC GACGTGTCTCGTCTGGTGTTGGTTACGTAGTTTAAGGTAACTCTAGCATC GTCGTGTACAACGGCGTGTTTCTTGTCGTTCACAACCTGAGCATTTCGAC GTGTGGAACCGGGGCATCAAGAGCCACAGCAGTGATGGTTTTGCATCCCC GATGATACTCTTGCGCCGCACGCTGCTCCCGCAGCAGCAGCAGCACTAGC AGCAACCACCGCAGCCGCTTCTGCAGCTGCTGGCCGCTACTACGGTGATG ACGACGAGGACTACCACGCCTTCAGCTCCATGCCCTCCCTCCCTCTCCGC GCCGCCCCTCTCTCGGCCACTCCCCACCCGCCCGCAAAAAATCCATGCAG AAAGATCTTCGAAGCCAGCCGCGAGCTCATCCCTGAGAAAGACGCCGAGT TCTTCCCGGCGATGGAGGTGTCCAACCTCGCCAGCGACGGCAGCGCCGCG GCCGCGTCGGAGGTGGACTTCCTCTCGCGGGTGCTGACGGGGCGCGTGAC GATGGTCGGGCTTTTCCACCGGCAGTTCGGGTACAGCATGCTGGAGAGCT GGACCGGGCCGTTCGAGGAGGCCTTCGCACGGGGGCAACGCGGTGAGAGA GAGAGAGGGGGGGGGATGCCGTAGTCGTTAGACAATTGACGACCTCGTTT CCCTACAAAGCCGGGACGGAGCACGCCGGGATCTCACCGGACCGGGCTCG CATATTGCCAAGCGCGAAGCGCTGTGAGGTATTCGGCGAGTCGCATGACG GGGGTACTCTGTAGATGTCATCTGAACCGTGTGTTCGTCGCAGTTTTCCT CTTGACAGGTTTTGGTACACATAACATGCCGATCATCGCGACGAGCATTA GAACCAAGGCCACTGCAACCTTTTACAGCTGGCCAGCTACCGTAGTAAGC TGCCTCTTTCGGGGGGGGGGGGGGGGGGCNNNNNNNNNCCTGGAACTGAC ACACCATATACTGCACCCTACGTTGGTCGGGCGCCGCCGTGGGCGGTGGG TGGTGGGGGGGGGGGGGGGGGGGGGGGGGGCGCACTCATGTTTTGCATGC CTTGTTCGGCCACTTTTCGTCCAGCTCTTTTCGGCATCCGCTCCTATTCC ATACTCCATTCATACGGTGTTGTCAGCTACAAGCTTCCTTGCGTCTCTTC CTGTCCTTAGGGATTGGAGCCGACGGACATTAAGTCGTCATTGCGTGTGT ACCGCTGTATTTGCTGCTGTTGTGCTGCTGCTGTTGTTGGGTTGATGGGT TTGCATATTTTCCTTTCCCCCCGGTACATGATCCACCTTTGACATAGTAG GAAGGAACGATTGGCCGTCGGCGACCGGTCCTGTGGGAACAATTCGCCGT CCTCCCGAGGACGCATGGTTAATGGTCTAACCGCTGAGGCATGAAAACAT AAGAGTACGCCTCTCCCCTGCACATGATTCAAGCCCATCAACCCGACAGA AGAACAAACCACGACAACATGTAGCGCCACAAACGCACGAACGATTTCAG TCCATGTCCCCACGTTGCAGAATATTCTTTGCGTGTGTGTGTGTGTTCTT TCGAAGTAGCATCAACCGCGTCAACCCCGCCGAACAAAGAAAGACCGTTG ATGTTTTAGCAGGACTCAACCCAGAAACGGGAACAAGATTTCCGGTCTGC CGGACCCCTCGGCAGGAAGTTCGCCTGTTTCCCAAGGAAGCGGCGCATCT TCTTGGCGTTCTACCTCAACCACCCCTCCCCTCGTTTCTTCTCAATGTTG CCCCTGTGGGTCAGGGGATAAACTACCTTCGGCGGGTGGGAAGCCAACAG GGGCGGCACCGCCGTCTGCGTTGTCCCTGTCGTTGCTCGAGTCGTGGCCG CTACGGATGATGAAGCCGCTGCTGGTCAGCACGATGGGGAGGGGCTTGTC CCCGGAGAAAAAGGCAGCGTTCTTCTACCGATTCGGCCCTACCGAAGAGG TGTGCATAGATATATGGTTTTTTGCGATATATGTTCATAGCTTTCATTTT TCCACGTATGTCGTTACGATCCCTCAGTTATTTTAGCGACCATCGCCATG ACCCGTCAGTTCCCATCTGTCGTACCGAAACCGCCTACCTACCGTGTGAT GGTGCGTCATCTGCTGAGGAGCTATCGCACGGTCCGGGGTCGTGAAGAAG AGACGCTCTCCGCGGTTCATACACGGTTGATACTCCGAGAACGGATCAGC GTTTCTCTTCACCCCGTCAACCATGACGTAGCGAGTCGACCGGCAGTTTT CCATAGGCCCCATGGGTGATGACCAGTGTACCATGGATCATGGTGCTTTA TTATGCATGAGGGTGTTTCTCGCGATGGACGATGATGCTTTCTTGTCATC GGCAACGCGTGCGCGCGCGCACGGGCAGGTACGCAAGGCGCTGGGGATCG TCAACCGCCTGACGCTGTACGTTCTCCTGGTAGACCAGAAGGGCAGGGTG CGATGGCAAGGGACGGGAAAGGCGACTCCCGACGAGGTGGAGTCGCTCGT CCGGTGTGCTCGACAGCTCGCTGCCGAGGGCAGCGGCGGCGGCGGCGGCA GCGGCGACCGGGGGCGCGCCAGCGGGGGAGAGCAAGGAAAGAGAAGTAAG AAGAGAGGGAGCAGCTCTCTGAATAGCACCACAATGAGCCAGGCACGCCA CTGGGGAGGGCGACCGTAGCAGACTTGTCGCACGGCACTAGCATTCATAG CAGTGGTGGCGGCGGCGGGGGCCGAGTCTCTCTGGTGGATATGGTTTCGT TGGTGTGTGTCCGTATTTTGTCGGAATCAATTGTGGTAAGAGCGCTTTTG TTTTTACCTTGTTGCGTCGTTGTTCGGTTCGGTCGCGTTCGTGCGGTTCA TGATGAAGACGTGTTGGTAGAAAGATCGTGTGCCGCGACGTTGCTCCTTG TGTTTCGTCCGTCCGTTTCGAAGGGTTTTGTTCCCGCTACGGGCGCCGGC GAGCTGCAGCAGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT GGTGGTGCTGCTGCTGCTGTTTTGTGTCGAGATTTCGTCGTGTTGATGAA CCGGCGCCATGTATGTCCATTCTGGAGAGTGGAAGTCGTCACGGGATTTA GGATTCACGGTGCTGCCACAGAGAAGATATCGACACCACCAGGCAGCGTA GCCTGTCTCTTCCCAGACACGGGAAGGGTAGGAGGGGCGGGTAGACAGAG AGGAATCCACAAGACGGCAACTGCTTTTACCTACAAATTGGCTGCATCAG GTCGCTCGTTGAGATCTTGGCTCCCCGGAGAGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1248:877..5211-

>mRNA_Ecto-sp13_S_contig1248.2057.1 ID=mRNA_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:877..5211- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGTCTAGCCGAACCTGCCGCCCCTTACCAGCGTTGAAGACGCT
TGCACGAGGAAGATGGCTTGCCTCGGGCAAAATGCAAGCCGATGACCGCC
ATGTTGTCCCGCTGGCAGCACGTGCCTTCGTGTCCTATAGTCACGTATCG
CAGCCAAGAGCAAAGGCACCATCATCAGTAGTAGTAGGCTGTGCTGCTAC
CTGGCAACAAGCCCTCTCGACGTCTGCTGTCGGCGATGGCGAGGACGTCG
GCCAGAAGGGCAACAACAACCGCAGGGAGGATGGTGATGGGGGCGAGGCA
ACCGACGACGGGGCAGTTGCAGCAGAGCGAAGAGACGGCAGCGCTTCGGG
AGTGACGGCGGCAGTGCCGGAGGGGGTCCCGCTCGATGCGCGCGGGATGC
CGCGGCCGAAGCAACGGGTGGACGTGGAGCTTGGAACCTTTCACGAGTTC
ACCGCGGTCAACAAGACTGGCGGAAAGATCTTCGAAGCCAGCCGCGAGCT
CATCCCTGAGAAAGACGCCGAGTTCTTCCCGGCGATGGAGGTGTCCAACC
TCGCCAGCGACGGCAGCGCCGCGGCCGCGTCGGAGGTGGACTTCCTCTCG
CGGGTGCTGACGGGGCGCGTGACGATGGTCGGGCTTTTCCACCGGCAGTT
CGGGTACAGCATGCTGGAGAGCTGGACCGGGCCGTTCGAGGAGGCCTTCG
CACGGGGGCAACGCGGGGATAAACTACCTTCGGCGGGTGGGAAGCCAACA
GGGGCGGCACCGCCGTCTGCGTTGTCCCTGTCGTTGCTCGAGTCGTGGCC
GCTACGGATGATGAAGCCGCTGCTGGTCAGCACGATGGGGAGGGGCTTGT
CCCCGGAGAAAAAGGCAGCGTTCTTCTACCGATTCGGCCCTACCGAAGAG
GTACGCAAGGCGCTGGGGATCGTCAACCGCCTGACGCTGTACGTTCTCCT
GGTAGACCAGAAGGGCAGGGTGCGATGGCAAGGGACGGGAAAGGCGACTC
CCGACGAGGTGGAGTCGCTCGTCCGGTGTGCTCGACAGCTCGCTGCCGAG
GGCAGCGGCGGCGGCGGCGGCAGCGGCGACCGGGGGCGCGCCAGCGGGGG
AGAGCAAGGAAAGAGAAGTAAGAAGAGAGGGAGCAGCTCTCTGAATAGCA
CCACAATGAGCCAGGCACGCCACTGGGGAGGGCGACCGTAG
back to top