mRNA_Ecto-sp13_S_contig9023.20579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9023.20579.1
Unique NamemRNA_Ecto-sp13_S_contig9023.20579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: D8LSR3_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR3_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.450e-65
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHVYSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLGFCTNSLEL CDCLGHIHY DATLNDSRGQPYEVE+AVCMHEEDA LLWKHVY+SGHNESRRSRRLVLSFIATVVN+EYLFYWYLMQDGSIEFEIKLSGELS
Sbjct:  328 VGDYGLGFCTNSLELGCDCLGHIHYFDATLNDSRGQPYEVEKAVCMHEEDAGLLWKHVYTSGHNESRRSRRLVLSFIATVVNYEYLFYWYLMQDGSIEFEIKLSGELS 435
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: A0A6H5KQ64_9PHAE (Amine oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQ64_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.970e-53
Identity = 98/151 (64.90%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHE------------------------------------------YLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLGFCTNSLEL CDCLGHIHY DATLNDSRGQPYEV++AVCMHEEDA LLWKHV Y +GHNESRRSRRLVLSFIATVVN++                                          YLFYWYLMQDG IEFEIKLSGELS
Sbjct:  322 VGDYGLGFCTNSLELGCDCLGHIHYFDATLNDSRGQPYEVKKAVCMHEEDAGLLWKHVEYRNGHNESRRSRRLVLSFIATVVNYDQSVRSARPLPTQPPSMMLHRPPRVVSLSFTAALLSCVPRTKRYLFYWYLMQDGRIEFEIKLSGELS 472
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: K8EHE4_9CHLO (Amine oxidase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EHE4_9CHLO)

HSP 1 Score: 179 bits (453), Expect = 1.100e-50
Identity = 83/109 (76.15%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+CT+SLEL CDCLG+IHY DATL +S+G+PY +++AVCMHEED  LLWKHV Y +GH+E+RRSRRLVLSFIATVVN+EYLFY+Y  QDG+IEFEIKL+GELS
Sbjct:  337 VGDYGLGYCTDSLELGCDCLGNIHYFDATLANSKGEPYVIKKAVCMHEEDHGLLWKHVEYRTGHSEARRSRRLVLSFIATVVNYEYLFYYYFQQDGTIEFEIKLTGELS 445
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: A0A448ZC22_9STRA (Amine oxidase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC22_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.760e-50
Identity = 82/109 (75.23%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLGFC NSL L CDCLGHIHY DA LNDS+G P E++ AVCMHEED  +LWKHV Y +GHNESRRSR L++S IATVVN+EYLFYW+L QDG I+F+IKLSGELS
Sbjct:  384 VGDYGLGFCANSLSLGCDCLGHIHYFDAILNDSQGNPVELKNAVCMHEEDTGVLWKHVEYRNGHNESRRSRELIISSIATVVNYEYLFYWHLRQDGCIDFKIKLSGELS 492
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: I0YXN6_COCSC (Amine oxidase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YXN6_COCSC)

HSP 1 Score: 174 bits (441), Expect = 5.440e-49
Identity = 78/109 (71.56%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLGFC NSLEL CDCLGHI Y DA LNDS+G+P+ +++AVC+HEEDA +LWKH+ Y +GH E RRSRRLVLSF+ATVVN+EY FYW+  QDG+IE++IKL+GELS
Sbjct:  303 VGDYGLGFCANSLELGCDCLGHIKYFDAVLNDSKGEPWAIKKAVCLHEEDAGILWKHMEYRNGHAEVRRSRRLVLSFVATVVNYEYCFYWHFYQDGTIEYQIKLTGELS 411
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: C1DZI7_MICCC (Amine oxidase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZI7_MICCC)

HSP 1 Score: 174 bits (441), Expect = 6.590e-49
Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+C +SLEL CDCLGHI Y DA L DSRG+PY  ++A+CMHEED  +LWKHV Y +GHNE+RR+RRLV+SF+ATVVN+EYLFYWY  QDGS+E+EIKLSG LS
Sbjct:  323 VGDYGLGYCADSLELGCDCLGHIRYFDAVLCDSRGEPYVTKKAICMHEEDMGVLWKHVEYRNGHNEARRARRLVVSFVATVVNYEYLFYWYFNQDGSMEYEIKLSGMLS 431
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: A0A383WM86_TETOB (Amine oxidase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WM86_TETOB)

HSP 1 Score: 174 bits (440), Expect = 6.900e-49
Identity = 81/109 (74.31%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+C NSL L CDCLGHIHY DA L +S G+P  ++ AVCMHEED  LLWKHV Y +GH+ESRRSRRLVLSFI+TVVN+EY FYWYL QDG+I FEIKL+GELS
Sbjct:  302 VGDYGLGYCANSLALGCDCLGHIHYFDAALTNSSGEPVLLKNAVCMHEEDVGLLWKHVEYRNGHSESRRSRRLVLSFISTVVNYEYAFYWYLYQDGTINFEIKLTGELS 410
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: A0A2V3J6I3_9FLOR (Amine oxidase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6I3_9FLOR)

HSP 1 Score: 173 bits (438), Expect = 1.400e-48
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+C NSLEL CDCLG IHY DA L DSRG+PY + +AVCMHEED  LL KHV Y +GH+ESRR+RRLV+SFIATVVN+EYLFYWYL  DGSI  EIKLSGELS
Sbjct:  335 VGDYGLGYCANSLELGCDCLGAIHYFDAVLPDSRGEPYVIRKAVCMHEEDVGLLHKHVEYRTGHSESRRARRLVVSFIATVVNYEYLFYWYLHHDGSISHEIKLSGELS 443
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: A0A830HQ12_9CHLO (Amine oxidase n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HQ12_9CHLO)

HSP 1 Score: 172 bits (436), Expect = 4.020e-48
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+C NSLEL CDCLGHI Y D T  D+ G PY +++A+CMHEED  +LWKH+ Y +GH ESRRSR+LVLSFIATVVN+EYLFYW L QDGSIEF+IKLSGELS
Sbjct:  373 VGDYGLGYCANSLELGCDCLGHIQYFDVTQADAEGAPYTIKKAICMHEEDDGILWKHMEYRNGHAESRRSRKLVLSFIATVVNYEYLFYWTLHQDGSIEFQIKLSGELS 481
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BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Match: C1MMS2_MICPC (Amine oxidase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMS2_MICPC)

HSP 1 Score: 171 bits (432), Expect = 8.350e-48
Identity = 75/109 (68.81%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEEDAELLWKHV-YSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFEIKLSGELS 324
            VGDYGLG+C +SLEL CDCLGHI Y D T+ +S+G+PY  ++A+C+HEEDA +LWKHV Y +GHNE+RR+R+LV+SF+ATVVN+EYLFYWY  QDGS+E+EIKLSG LS
Sbjct:  286 VGDYGLGYCADSLELGCDCLGHIRYFDVTMANSKGEPYVTKKAICLHEEDAGVLWKHVEYRNGHNEARRARKLVVSFVATVVNYEYLFYWYFNQDGSMEYEIKLSGMLS 394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9023.20579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSR3_ECTSI2.450e-6594.44Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KQ64_9PHAE2.970e-5364.90Amine oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
K8EHE4_9CHLO1.100e-5076.15Amine oxidase n=1 Tax=Bathycoccus prasinos TaxID=4... [more]
A0A448ZC22_9STRA4.760e-5075.23Amine oxidase n=1 Tax=Pseudo-nitzschia multistriat... [more]
I0YXN6_COCSC5.440e-4971.56Amine oxidase n=2 Tax=Coccomyxa TaxID=41891 RepID=... [more]
C1DZI7_MICCC6.590e-4972.48Amine oxidase n=1 Tax=Micromonas commoda (strain R... [more]
A0A383WM86_TETOB6.900e-4974.31Amine oxidase n=1 Tax=Tetradesmus obliquus TaxID=3... [more]
A0A2V3J6I3_9FLOR1.400e-4876.15Amine oxidase n=1 Tax=Gracilariopsis chorda TaxID=... [more]
A0A830HQ12_9CHLO4.020e-4873.39Amine oxidase n=2 Tax=Pycnococcus provasolii TaxID... [more]
C1MMS2_MICPC8.350e-4868.81Amine oxidase n=1 Tax=Micromonas pusilla (strain C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9023contigEcto-sp13_S_contig9023:1523..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.9
Seed ortholog evalue4.8e-54
Seed eggNOG ortholog2880.D8LSR3
Preferred nameAMO2
Model size326
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K13281
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006807,GO:0006873,GO:0006875,GO:0006878,GO:0008131,GO:0008150,GO:0008152,GO:0009056,GO:0009308,GO:0009310,GO:0009636,GO:0009987,GO:0016491,GO:0016638,GO:0016641,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0042763,GO:0042764,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048037,GO:0048038,GO:0048878,GO:0050801,GO:0050896,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071941,GO:0097237,GO:0098754,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1990748
Exons2
EggNOG free text desc.amine oxidase
EggNOG OGsCOG3733@1,KOG1186@2759
EC1.4.3.21
Cds size324
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.7869668-CDS-Ecto-sp13_S_contig9023:1522..17731681464175.7869668-CDS-Ecto-sp13_S_contig9023:1522..1773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9023 1523..1773 +
1681464175.8007479-CDS-Ecto-sp13_S_contig9023:2062..21351681464175.8007479-CDS-Ecto-sp13_S_contig9023:2062..2135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9023 2063..2135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9023.20579.1prot_Ecto-sp13_S_contig9023.20579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9023 1523..2135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9023.20579.1

>prot_Ecto-sp13_S_contig9023.20579.1 ID=prot_Ecto-sp13_S_contig9023.20579.1|Name=mRNA_Ecto-sp13_S_contig9023.20579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VGDYGLGFCTNSLELSCDCLGHIHYLDATLNDSRGQPYEVEQAVCMHEED
AELLWKHVYSSGHNESRRSRRLVLSFIATVVNHEYLFYWYLMQDGSIEFE
IKLSGELS
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mRNA from alignment at Ecto-sp13_S_contig9023:1523..2137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9023.20579.1 ID=mRNA_Ecto-sp13_S_contig9023.20579.1|Name=mRNA_Ecto-sp13_S_contig9023.20579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9023:1523..2137+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGAGACTACGGTCTTGGCTTCTGCACGAACTCGCTTGAGCTGAGTTG
CGACTGCCTCGGCCACATCCACTACCTCGACGCGACGCTAAACGACAGCC
GCGGGCAGCCGTACGAAGTCGAGCAGGCTGTGTGCATGCACGAGGAGGAC
GCGGAGCTCCTGTGGAAGCACGTGTATAGCAGCGGGCACAACGAGAGCCG
CCGGTCGAGGAGGCTGGTCCTGTCATTCATCGCGACCGTCGTCAACCACG
AGTGAGTTGGTAGCCTTCAGTCCACGGGCTTGAAACGGCAGAGAAGCTGC
GTAGTGCCCCGTAGACAACAGCGGAATGCTGATGATGTGGCATCGATTTT
CATTTGCATATGCTGTCCTGGGTGCAGCCGCGTTGTGCTGCGCGCTTTGC
GGCTGAACCACTCACTCAGCCTGTCAGTCCGTTCATCCCGCCCCACTCTA
CCTAACCAACCCCCGACGATGCTGTCCCCTCCCTCCGTGGATCTTATCAT
CAACCCTTTCCCTGCTCTCGTGCGTTCTGGACACCAAAAGGTATCTGTTC
TACTGGTACCTGATGCAAGATGGTAGCATCGAGTTCGAGATTAAGCTGTC
GGGCGAGCTTTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9023:1523..2137+

>mRNA_Ecto-sp13_S_contig9023.20579.1 ID=mRNA_Ecto-sp13_S_contig9023.20579.1|Name=mRNA_Ecto-sp13_S_contig9023.20579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9023:1523..2137+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGAGACTACGGTCTTGGCTTCTGCACGAACTCGCTTGAGCTGAGTTG
CGACTGCCTCGGCCACATCCACTACCTCGACGCGACGCTAAACGACAGCC
GCGGGCAGCCGTACGAAGTCGAGCAGGCTGTGTGCATGCACGAGGAGGAC
GCGGAGCTCCTGTGGAAGCACGTGTATAGCAGCGGGCACAACGAGAGCCG
CCGGTCGAGGAGGCTGGTCCTGTCATTCATCGCGACCGTCGTCAACCACG
AGTATCTGTTCTACTGGTACCTGATGCAAGATGGTAGCATCGAGTTCGAG
ATTAAGCTGTCGGGCGAGCTTTCG
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