mRNA_Ecto-sp13_S_contig902.20577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig902.20577.1
Unique NamemRNA_Ecto-sp13_S_contig902.20577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig902.20577.1 vs. uniprot
Match: A0A6H5K9R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R7_9PHAE)

HSP 1 Score: 663 bits (1711), Expect = 1.960e-237
Identity = 340/365 (93.15%), Postives = 348/365 (95.34%), Query Frame = 3 
Query:  285 MRLLCWSPYLMVCYLLPAYGFVRQRFSTRIGPEEHRTGYGRRGASTAPPTRPTTIMACAASSTTAVDSSAVEDEDMSCSSFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHGLPIVKYRAAATLGEEIAVQGTLVSCDDSGSGGGRSRWRFELAAASEPSRVFVTAEATVSWPGGAAMPPGVAVSKLSRSAEPTMTDDTELLQPLHEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNESRKFRPVPEWVQEAIMLPSAVL 1379
            MRLLCWSPYLMVCYLLPA+GFVRQRF TR GPE HRTGYGR G STA  TRPTTI+ACAASSTTAVDSSAVED+ MSCSSFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVH LPIVKYRAAATLG+EIAVQGTLVSCDDS SGGGRSRWRFELAAAS+PSRVFVTAEATVSWPGGAAMPPGVAV KL RSAEPTM+DDTELLQPL EAFTD PK LKVVVWSDDLD GGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLW+ENGTLVAHAEIALFCMDNE+RKFRPVPEWVQ AIMLPSAVL
Sbjct:    1 MRLLCWSPYLMVCYLLPAHGFVRQRFRTRTGPEGHRTGYGRGGTSTATSTRPTTIIACAASSTTAVDSSAVEDKHMSCSSFRHCSTVYIEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGDEIAVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWPGGAAMPPGVAVIKLPRSAEPTMSDDTELLQPLPEAFTDPPKALKVVVWSDDLDVGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWKENGTLVAHAEIALFCMDNETRKFRPVPEWVQVAIMLPSAVL 365
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BLAST of mRNA_Ecto-sp13_S_contig902.20577.1 vs. uniprot
Match: D8LB89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB89_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 3.270e-183
Identity = 267/275 (97.09%), Postives = 269/275 (97.82%), Query Frame = 3 
Query:  555 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHGLPIVKYRAAATLGEEIAVQGTLVSCDDSGSGGGRSRWRFELAAASEPSRVFVTAEATVSWPGGAAMPPGVAVSKLSRSAEPTMTDDTELLQPLHEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNESRKFRPVPEWVQEAIMLPSAVL 1379
            MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVH LPIVKYRAAATLGEEI VQGTLVSCDDS SGGGRSRWRFELAAAS+PSRVFVTAEATVSW GGAAMPPGVAVSKL RSAEPTMTDDTELLQPL EAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNE+RKFRPVPEWVQEAIMLPSAVL
Sbjct:    1 MTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHSLPIVKYRAAATLGEEITVQGTLVSCDDSSSGGGRSRWRFELAAASDPSRVFVTAEATVSWLGGAAMPPGVAVSKLPRSAEPTMTDDTELLQPLPEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVAGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNETRKFRPVPEWVQEAIMLPSAVL 275
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BLAST of mRNA_Ecto-sp13_S_contig902.20577.1 vs. uniprot
Match: A0A835YTJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.310e-24
Identity = 85/283 (30.04%), Postives = 140/283 (49.47%), Query Frame = 3 
Query:  549 IEMTDMYRIVYHANYVTYAQRAIEHAFGAPGVRVHGLPIVKYRAAATLGEEIAVQGTLVSCDDSGSGGGRSRWRFELAAASEPSRVFVTAEATVSWPGGAAMPPGVAVSKLSRSAEPTMTDDTELLQPLHEAFTDSPKTLKVVVWSDDLDGGGNLSIRAVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLVA-GETLDVRLGAKLSRGNRVMTMYESLWRE------NGTLVAHAEIALFCMDNESRKFRPVPEWVQEAIMLPSAV 1376
            +E TDM+  +YH NY+ +  RA +   G   V + G+  ++YR AA LG+ + + GT    +D+        W+  +  A    RVFVTA   +          G A S    SA          L    E+   S +   +V + D+L   G LS  +V+NY ER RTLSLG  ++G   L RLH++G  +V++ ISDLR++    +A G  L+V      +R  R +++ + ++ +         L+AHA + L C+D  ++K    P+W+ E + + S++
Sbjct:   58 VEDTDMFGHMYHGNYIKWLARASQKCLGHDTVLI-GVDALRYRNAAVLGDNMVISGTF--SEDA------QAWQCSVVDARNEKRVFVTASVLL----------GTASSDAGASA----------LAGKVESVPQSAQYFDMVAYGDELGADGALSPSSVINYMERTRTLSLGPPEEG---LYRLHKQGTDIVISRISDLRLDHTVRIAPGAELEVVNSGSANR--RTVSVRQRVYVKAPDEVSGRRLIAHATVELLCIDGATKKLSAFPDWILERLHVISSI 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig902.20577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9R7_9PHAE1.960e-23793.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB89_ECTSI3.270e-18397.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTJ2_9STRA1.310e-2430.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig902contigEcto-sp13_S_contig902:5992..8761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.6
Seed ortholog evalue8.8e-07
Seed eggNOG ortholog227086.JGI_V11_78812
Model size1494
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2CZXS@1,2SC25@2759
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-27_004780.1
Cds size1110
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.627955-UTR-Ecto-sp13_S_contig902:5991..61031681464175.627955-UTR-Ecto-sp13_S_contig902:5991..6103Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig902 5992..6103 -
1681464175.6721504-UTR-Ecto-sp13_S_contig902:8489..87611681464175.6721504-UTR-Ecto-sp13_S_contig902:8489..8761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig902 8490..8761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.6406639-CDS-Ecto-sp13_S_contig902:6103..63581681464175.6406639-CDS-Ecto-sp13_S_contig902:6103..6358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig902 6104..6358 -
1681464175.6515512-CDS-Ecto-sp13_S_contig902:6908..74701681464175.6515512-CDS-Ecto-sp13_S_contig902:6908..7470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig902 6909..7470 -
1681464175.6618285-CDS-Ecto-sp13_S_contig902:8196..84891681464175.6618285-CDS-Ecto-sp13_S_contig902:8196..8489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig902 8197..8489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig902.20577.1prot_Ecto-sp13_S_contig902.20577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig902 6104..8489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig902.20577.1

>prot_Ecto-sp13_S_contig902.20577.1 ID=prot_Ecto-sp13_S_contig902.20577.1|Name=mRNA_Ecto-sp13_S_contig902.20577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=370bp
MNLTMRLLCWSPYLMVCYLLPAYGFVRQRFSTRIGPEEHRTGYGRRGAST
APPTRPTTIMACAASSTTAVDSSAVEDEDMSCSSFRHCSTVYIEMTDMYR
IVYHANYVTYAQRAIEHAFGAPGVRVHGLPIVKYRAAATLGEEIAVQGTL
VSCDDSGSGGGRSRWRFELAAASEPSRVFVTAEATVSWPGGAAMPPGVAV
SKLSRSAEPTMTDDTELLQPLHEAFTDSPKTLKVVVWSDDLDGGGNLSIR
AVLNYFERIRTLSLGRGQDGELGLMRLHREGVSVVVTSISDLRVNSDGLV
AGETLDVRLGAKLSRGNRVMTMYESLWRENGTLVAHAEIALFCMDNESRK
FRPVPEWVQEAIMLPSAVL*
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mRNA from alignment at Ecto-sp13_S_contig902:5992..8761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig902.20577.1 ID=mRNA_Ecto-sp13_S_contig902.20577.1|Name=mRNA_Ecto-sp13_S_contig902.20577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig902:5992..8761- (Ectocarpus species13 EcNAP12_S_4_19m)
CATGTCTAAAAACAGTCCCGTATGGTGTGCACGGGGGTGCACGGGGAGTG
CACGGGTGTGGGTGTGCCGTTGTCGGCTGTAGGCACGTGCAAATATCGCC
TCAGGCCGAGTACTGAGCACCTCATTCCCATCCAATTGTCCCTCTCTTCT
TTCTCCAGGCTAGATCCCTTTCCAAGCTGACCCCTGATTCGTCAACAACC
ACGTCTCCGAACGTCGCCCGCTTCGGCTGCGGCCTCTCGCCGGCCTGCTC
CCGGGAGGCACACTGAACAACGATGAACCTCACGATGCGTCTGCTGTGTT
GGTCACCGTACTTGATGGTGTGCTACTTGTTACCGGCCTATGGCTTCGTG
CGGCAGCGCTTCAGTACGAGAATAGGTCCTGAGGAACACCGCACGGGGTA
CGGACGCCGTGGTGCCTCGACTGCACCACCGACTCGACCAACAACAATAA
TGGCTTGTGCGGCGTCGTCAACGACAGCGGTGGACAGCAGTGCCGTCGAG
GATGAAGATATGTCATGCTCGTCGTTCCGTCACTGTAGCACAGTTTATAT
CGAGATGACCGACATGTGAGTGTGGCTGCGTTCCCCGCTGCATGTGGCCT
GGCATCCATGTTCAGTGTAGGGGAACGTTGTGCTGTTGTGTACTACTTGT
CGAGCATGCCATGCTTCTTTTGCGGAAGTACTGGCTTAAGTAAATACTGC
GGAGAAGATATTCAGAAAACGTTGGACCTGTGGCTCACACGTCGGTTGCT
GTTCAGAGAAAACATGCAGGCACAGCGTCCGTCGTGTGATAGTTACTCTG
GCTGTTCTTTTGTGGGCTTATCTGTTTGTTCCATGGTGCTGTGGATCTTG
TTTGGCCACCGGGGCATTCCATTTAGACAGCCAATCACAGCAGTCAGCTC
CTGGGAATCTCCTCTTGTTATGTCGGTTTCTCTCTGGGAAGGAAGCAGTG
TTTACCCTTCTTTCTTGACCTTGCTTTTTTTCTGCGGGTCCAACAGCGGT
TGTTCTGTTCAGATATCTCCCTACCACAAACATGGTTCACCATGAGAAGA
AACAGCACGCGCGAAAAAACAGTTTTTGCATGTTGTCCGCATGTTTGTGT
GTGTTTATCCCGTCTATTCTAGAAGCCAGACTACAGTACACCGTTCTCGA
TATATGTGGATGGACTGGCTGAGGTCGAACTGGAGGAAGGCCACATATTT
CCACTCTATAAAACCTTCCTTCACCTTCCCTCGGCGATATTGTTCTGATG
TACACTTCCCAAAACCCTCATCAATTCTCTGTGCCGCGCAGGTATCGTAT
CGTGTACCACGCCAACTACGTTACCTACGCGCAGCGAGCAATCGAGCACG
CGTTTGGCGCACCCGGTGTCCGCGTCCACGGCCTCCCCATCGTCAAGTAC
AGAGCGGCGGCCACTCTGGGCGAGGAGATAGCCGTGCAGGGAACCCTCGT
CTCGTGCGACGACAGCGGCAGCGGTGGCGGGCGCTCGCGCTGGCGCTTCG
AGCTAGCCGCCGCTTCCGAACCCTCTCGGGTTTTCGTCACGGCAGAGGCC
ACCGTTTCCTGGCCGGGAGGAGCGGCTATGCCCCCGGGGGTGGCGGTAAG
CAAACTGTCGAGGAGCGCGGAACCAACGATGACTGACGACACGGAGCTGC
TACAGCCCTTGCACGAGGCGTTCACCGACTCCCCCAAGACTCTGAAGGTG
GTGGTGTGGAGCGATGATTTGGATGGAGGGGGGAATCTTTCGATCCGTGC
GGTGCTCAACTACTTCGAGCGGATACGCACGCTCAGCCTAGGGAGAGGTC
AAGACGGCGAGCTCGGGCTGATGCGACTGCATCGAGAGGGAGTTTCCGTG
GTGGTGAGATTTTCGTTTCCTGTGTGTCCTCCGACTTGAGAATTTGTTTC
CTAGTGAAATGAGTGCCATATGAAACGCTTTCGTGGACGAAAACAACCAT
ATCCACGAGCGGCTTTTGCAGCGTCGATTGGTTTGTTCCAATGTACGGCC
ACAAGAGGAGTTACCCCTTAGTGCTCTGTACCCCTGATCCGAGGCATCTC
TGGCCTACAATCGGGGCAATCGTGCAGAGAAGCACCGTCGCCTACAGTAG
TAGATTGGTGAAAGAACTCTCGCTTAGTCAACGTTTTTGGGGGTTATTTT
TTCGAAGAAAGGGAACCGACTGTGATTTACAGGTATAGGCGGCGCCGTAG
AGGCCGCGAAGATGGTGAGCGAACCGCTAAAGAACTGCCAGCATGTAAGC
TAACGAATGATGGCACCAAGCTGTTCACACGAAGGCTGTAAAGGCCCACC
ATTTCGGAGAACCTGGGGTTCTCCCAGAGAAACGTACGAGTAGCCCCTTT
TGGTCACGAACCGCCGACCCCCAATGCCTGCGTGCACTCACGTACGTATC
CAGGTGACAAGCATATCCGATCTCCGCGTGAACAGCGACGGCTTGGTTGC
GGGAGAGACGCTGGACGTGCGTCTAGGAGCAAAGCTGTCCAGGGGCAACC
GAGTCATGACCATGTACGAATCTCTGTGGAGGGAGAATGGGACTCTCGTC
GCGCACGCGGAGATCGCGCTGTTCTGCATGGACAACGAAAGTCGCAAGTT
TCGACCGGTTCCCGAGTGGGTGCAAGAAGCCATAATGCTGCCCTCTGCCG
TCCTTTGAATGCGGAGCGGAGTGTCTGCCTCATTCCACGTTATTCGTGCA
GTTTTCTACCAGAGGTGCATAGTTACCTTATTCTGGCAGTTTCTACCAGC
GCATGTTCCCCTTGGGGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig902:5992..8761-

>mRNA_Ecto-sp13_S_contig902.20577.1 ID=mRNA_Ecto-sp13_S_contig902.20577.1|Name=mRNA_Ecto-sp13_S_contig902.20577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig902:5992..8761- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTCACGATGCGTCTGCTGTGTTGGTCACCGTACTTGATGGTGTG
CTACTTGTTACCGGCCTATGGCTTCGTGCGGCAGCGCTTCAGTACGAGAA
TAGGTCCTGAGGAACACCGCACGGGGTACGGACGCCGTGGTGCCTCGACT
GCACCACCGACTCGACCAACAACAATAATGGCTTGTGCGGCGTCGTCAAC
GACAGCGGTGGACAGCAGTGCCGTCGAGGATGAAGATATGTCATGCTCGT
CGTTCCGTCACTGTAGCACAGTTTATATCGAGATGACCGACATGTATCGT
ATCGTGTACCACGCCAACTACGTTACCTACGCGCAGCGAGCAATCGAGCA
CGCGTTTGGCGCACCCGGTGTCCGCGTCCACGGCCTCCCCATCGTCAAGT
ACAGAGCGGCGGCCACTCTGGGCGAGGAGATAGCCGTGCAGGGAACCCTC
GTCTCGTGCGACGACAGCGGCAGCGGTGGCGGGCGCTCGCGCTGGCGCTT
CGAGCTAGCCGCCGCTTCCGAACCCTCTCGGGTTTTCGTCACGGCAGAGG
CCACCGTTTCCTGGCCGGGAGGAGCGGCTATGCCCCCGGGGGTGGCGGTA
AGCAAACTGTCGAGGAGCGCGGAACCAACGATGACTGACGACACGGAGCT
GCTACAGCCCTTGCACGAGGCGTTCACCGACTCCCCCAAGACTCTGAAGG
TGGTGGTGTGGAGCGATGATTTGGATGGAGGGGGGAATCTTTCGATCCGT
GCGGTGCTCAACTACTTCGAGCGGATACGCACGCTCAGCCTAGGGAGAGG
TCAAGACGGCGAGCTCGGGCTGATGCGACTGCATCGAGAGGGAGTTTCCG
TGGTGGTGACAAGCATATCCGATCTCCGCGTGAACAGCGACGGCTTGGTT
GCGGGAGAGACGCTGGACGTGCGTCTAGGAGCAAAGCTGTCCAGGGGCAA
CCGAGTCATGACCATGTACGAATCTCTGTGGAGGGAGAATGGGACTCTCG
TCGCGCACGCGGAGATCGCGCTGTTCTGCATGGACAACGAAAGTCGCAAG
TTTCGACCGGTTCCCGAGTGGGTGCAAGAAGCCATAATGCTGCCCTCTGC
CGTCCTTTGA
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