mRNA_Ecto-sp13_S_contig1248.2057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: D7G2P9_ECTSI (ATP synthase: assembly factor for F1 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P9_ECTSI) HSP 1 Score: 606 bits (1562), Expect = 2.190e-212 Identity = 337/397 (84.89%), Postives = 342/397 (86.15%), Query Frame = 1
Query: 58 MASSSRTCRPLPALKTLARGRWLASGKMQADDRHVVPLAARAFVSYSHVSQPRAKAPSSVVVGCAATWQQALSTSAVGDGEDVG-QKGNNNRREDGDGGEATDDGAVAAERRDGSASGVTAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXXDRGRASGGEQGKRSKKRGSSSLNSTTMSQARHWGGRP 1245
MASSSRTCR PA+KTL +GRWLA GKMQADDR VVPLAARAFVSY H QPRAKAP S VGCAA W+QALSTSAVGDGEDVG QKGN ERRDGSASG TAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVL GRVTMVGLFHRQFGYSMLESWTGPFEE FARGQRG+KLPSAGGK TGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXX K KKRG+SSLN T SQ RH GGRP
Sbjct: 1 MASSSRTCRRFPAVKTLGQGRWLALGKMQADDRRVVPLAARAFVSYDHALQPRAKAPPSAAVGCAAAWKQALSTSAVGDGEDVGSQKGNXXXXXXXXXXXXXXXXXXXXERRDGSASGETAAVPEGVPLDARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLAGRVTMVGLFHRQFGYSMLESWTGPFEETFARGQRGNKLPSAGGKTTGAAPPSALSLSLLESWPLRMMKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEGSGGXXXXXXXXXXXXXXX-KSKKKRGTSSLNGTARSQERHRGGRP 396
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A6P6X895_COFAR (mitochondrial ATPase complex subunit ATP10-like isoform X1 n=7 Tax=Coffea TaxID=13442 RepID=A0A6P6X895_COFAR) HSP 1 Score: 100 bits (249), Expect = 7.230e-20 Identity = 73/225 (32.44%), Postives = 109/225 (48.44%), Query Frame = 1
Query: 478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVS---------NLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
++ G F +F + K GGKI A++ +IP A FPA+EV+ + S G+ ++A ++D + +++ L R +M+ SW+ PF + F + +SL+ESW LR +K LL+ M + +KK Y FG RK L I+N LT YV L+D+ GR+RWQG G ATP+EV SL+ C L E
Sbjct: 75 EMSRGYFADFGEMKKHGGKIAMANKIIIPAMAATKFPALEVNFSDGSSLKLPITSSGNGSSADKLD------VPKASLLCLSFRGSSQAMINSWSKPFLDEFCSSKE----------------TQLFEVSLIESWLLRRNPIKKLLLRIMKKPSPDDKKNVLQRQIVYSFGDHYYFRKELNILNLLTGYVFLLDKFGRIRWQGFGSATPEEVSSLLACTALLLEE 277
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A8J9SHZ6_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SHZ6_9CHLO) HSP 1 Score: 97.1 bits (240), Expect = 3.120e-19 Identity = 72/220 (32.73%), Postives = 110/220 (50.00%), Query Frame = 1
Query: 478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLES-----WPLRMMKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 1110
+++ G F +F + +T G++F+AS +L P + PAM V G A EV F + RV ++ + R L+SW+ P+ + +G G + LSL+ES WP + M +L S + +P + + FG E+R+ALG+ NRLT Y L+D KGRVRW+G+G+AT E E+LV CAR+L + G
Sbjct: 22 EMKRGYFDDFKDLKETQGRMFQASEQLSPAGTSPHLPAMAV---MEPGGA----EVMFPPPQGSLRVALLCIAFRAGAEDKLQSWSEPYRDGL-QGCTGARW---------------FDLSLVESPVMSIWPFKQM--ILRSGVTGPAAPSEVCLLQREPIFHFGDATEIRRALGMTNRLTGYAYLIDGKGRVRWRGSGQATAAEAENLVSCARELHSAG 216
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: I0YQS6_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQS6_COCSC) HSP 1 Score: 96.3 bits (238), Expect = 3.420e-19 Identity = 70/219 (31.96%), Postives = 109/219 (49.77%), Query Frame = 1
Query: 481 VELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLES-----WPLRMMKPLLVSTMGRGLSPEKKAAF----FYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAEG 1110
++ G F +F + +T G++F+AS +L P + P M V G A EV F + RV ++ + R L SW+ PF EA +G+ G + +SL+ES WP + M +L S + + +P + + FG E+R+ LG+ NRLT Y L+D KGRVRW+G+G+AT E E+LV C+++L + G
Sbjct: 1 MKRGYFDDFKDLKETQGRMFQASEQLSPAGTSPHLPPMAV---VEPGGA----EVLFPPSQDSMRVGLLCIAFRAGAEDKLRSWSEPFREAM-QGRSGARW---------------FDMSLVESVVMRIWPFKQM--ILRSGLTKPTAPAEACQLQPEHIFHFGDATEIRRVLGMTNRLTGYAYLIDGKGRVRWRGSGQATAAEAENLVACSKELLSGG 194
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI00098E00BB (uncharacterized protein LOC109845377 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E00BB) HSP 1 Score: 96.3 bits (238), Expect = 1.450e-18 Identity = 71/219 (32.42%), Postives = 112/219 (51.14%), Query Frame = 1
Query: 466 KQRVDVEL--GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAAA-ASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
K R+ EL G F + + + K GGKI A++ LIP +A FP +EV NL++ S + + + + +++ L R +M+ESW+ PF AF +A +S ++SW L + ++ + + M + SP+++ Y FG +RK L I+N LT Y+ L+D+ GR+RWQG G AT +EV SL+ CA L E
Sbjct: 60 KARLSDELSRGYFADISEIRKNGGKIAMANKTLIPLLEAIKFPDLEV-NLSNGSSLKLPVTSGESTAHIDAPLASLLCLSFRASSQTMVESWSVPFVHAF----------------NDSAEVQVYEVSFVDSWLLSLGPVRKMFIKMMKKSASPQRQIV--YSFGDHYYLRKKLQILNLLTGYIFLLDRFGRIRWQGFGLATGEEVSSLLSCALLLLEE 259
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI001929996E (uncharacterized protein LOC120261176 isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929996E) HSP 1 Score: 95.5 bits (236), Expect = 2.410e-18 Identity = 78/221 (35.29%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 466 KQRVDVEL--GTFHEFTAVNKTGGK-IFEASRELIPEKDAEFFPAMEVSNLASDGSAAA--ASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
K R+ EL G F + + + K GGK I A++ +IP A FP +EVS SDG + S ++ V++V L R +M ESWT PF +AF S GK +S ++SW L + ++ L + M + P++ Y FG ++RK L I+N LT Y+ L+DQ GRVRWQG G AT DE+ SL+ C L E
Sbjct: 54 KARISDELSRGYFADISEIRKNGGKQIAMANKTVIPSMAAVKFPDVEVS--FSDGRSLRLPVSSEQAVTDASDVGVSLVCLSFRANSQAMAESWTAPFLDAF----------STSGKV------QVYEVSFIDSWLLSLAPVRKLFLKVMKKSNIPQRHIV--YSFGDHYDLRKKLQILNLLTGYIFLLDQLGRVRWQGFGFATQDELSSLLTCTSFLLNE 254
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: UPI0012485AC6 (uncharacterized protein LOC115980211 isoform X2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012485AC6) HSP 1 Score: 94.4 bits (233), Expect = 4.610e-18 Identity = 70/225 (31.11%), Postives = 114/225 (50.67%), Query Frame = 1
Query: 466 KQRVDVEL--GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSAA-----AASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGR--GLSPEKKAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
K +D E+ G F + + +N+ GGKI A++ +IP A FP +EV+ SDG+ + E+ + + + +++ L R +M++SW+GPF +AF+ + +S ++SW LR+ +K LL+ M + G + Y FG RK L ++N LT Y+ L+D+ GR+RWQG G AT +E+ SL+ CA L E
Sbjct: 35 KSVLDYEMNRGYFADISELNQHGGKIAMANKIIIPAMAAVKFPVLEVNY--SDGTTVKLPKTSNGEIVDVDKSAIPKASLICLSFRANSQAMIDSWSGPFIDAFSNSKD----------------VQLYEVSFIDSWFLRLNPIKRLLLRIMKKSNGGKDALQKQIVYSFGDHYYFRKELKVLNLLTGYIFLLDKFGRIRWQGFGLATQEELSSLLSCASLLLEE 241
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A1U7WUZ9_NICSY (uncharacterized protein LOC104230097 n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7WUZ9_NICSY) HSP 1 Score: 92.8 bits (229), Expect = 6.630e-18 Identity = 71/218 (32.57%), Postives = 108/218 (49.54%), Query Frame = 1
Query: 490 GTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGSA------AAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEKKAAFF----YRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
G F + + + GGKI A++ +IP A FPA+EVSN SDGS+ +A + V+ ++ + +++ L R +M++SW+ PF + F R +S ++SW L + +K LL+ TM + E K Y FG RK L I+N LT Y L+D+ GR+RWQG+G AT +E+ SL+ C L E
Sbjct: 4 GYFADINELKQHGGKIATANKIIIPAVAAVKFPALEVSN--SDGSSLKLPITSAGNGVE-ANKAEAPKASLLCLSFRASSQAMVDSWSKPFLDTFKDSNR----------------VQLYEISFIDSWLLTLSPVKKLLLRTMRKSNPDESKDVLHRQIVYSFGDHYYFRKELKILNLLTGYTFLLDKFGRIRWQGSGLATEEELSSLLSCTSLLLDE 202
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A200R5C4_9MAGN (ATPase assembly factor ATP10 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R5C4_9MAGN) HSP 1 Score: 94.7 bits (234), Expect = 6.860e-18 Identity = 71/221 (32.13%), Postives = 109/221 (49.32%), Query Frame = 1
Query: 478 DVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEVSNLASDGS-----AAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEK----KAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
++ G F + + + K GGKI AS +IP +A FP++EV+ SDG+ A + D ++ ++V L R M++SW+ PF +AF+ + +S +ESW L + +K LL+ M + + K + Y FG RK L I+N LT Y+ L+D+ GR+RWQG G AT +E++SLV CA L E
Sbjct: 75 EMSRGYFADMSDLKKHGGKIAMASNTIIPAMEAVKFPSLEVNY--SDGTCLNLPATSQENADKPDKMAIPGASLVCLSFRASSQGMIDSWSVPFVDAFSASKN----------------VRIFEVSFIESWFLSLNPIKWLLLRIMRKSKTDGKNDVLQRQLVYSFGDKYYFRKELKILNLLTGYIFLLDRFGRIRWQGFGLATEEELKSLVSCASLLLKE 277
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Match: A0A2U1PZI5_ARTAN (ATPase assembly factor ATP10, mitochondria n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZI5_ARTAN) HSP 1 Score: 94.4 bits (233), Expect = 7.570e-18 Identity = 76/236 (32.20%), Postives = 110/236 (46.61%), Query Frame = 1
Query: 442 DARGMPRPKQRVDVELGTFHEFTAVNKTGGKIFEASRELIPEKDAEFFPAMEV--SN-------LASDGSAAAASEVDFLSRVLTGRVTMVGLFHRQFGYSMLESWTGPFEEAFARGQRGDKLPSAGGKPTGAAPPSALSLSLLESWPLRM--MKPLLVSTMGRGLSPEK---KAAFFYRFGPTEEVRKALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLAAE 1107
DA R + + ++ G F + + + GGKI A++ +IP A FP +EV SN + S G+ + + D + TM+ L R M +SW+ PF EAF+ G+ +S +ESW L M ++ LL+ + + E + Y FG RK L I+N LT Y+ LVD+ GR+RWQG G ATPDEV SL+ C L E
Sbjct: 53 DAIEKERARLKDEMNRGYFADMAELKQHGGKIATANKVIIPAMAAVKFPQLEVNYSNGKSFKLPITSYGTDTESVKADI------PKATMMCLSFRAASQEMTDSWSVPFVEAFS----------------GSKKVQLYEISFIESWLLSMTPIRKLLLRVLKKSKPQENGVLQRQIGYAFGDHYYFRKELKILNLLTGYIFLVDKFGRIRWQGFGLATPDEVSSLLSCTSLLLEE 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1248.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1248.2057.1 >prot_Ecto-sp13_S_contig1248.2057.1 ID=prot_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=397bp MASSSRTCRPLPALKTLARGRWLASGKMQADDRHVVPLAARAFVSYSHVSback to top mRNA from alignment at Ecto-sp13_S_contig1248:877..5211- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1248.2057.1 ID=mRNA_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4335bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:877..5211- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1248:877..5211- >mRNA_Ecto-sp13_S_contig1248.2057.1 ID=mRNA_Ecto-sp13_S_contig1248.2057.1|Name=mRNA_Ecto-sp13_S_contig1248.2057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1248:877..5211- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |