mRNA_Ecto-sp13_S_contig9019.20574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9019.20574.1
Unique Name	mRNA_Ecto-sp13_S_contig9019.20574.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9019.20574.1 vs. uniprot
Match: D7FRR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR7_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 4.350e-63
Identity = 148/310 (47.74%), Postives = 162/310 (52.26%), Query Frame = 1

Query:   28 VPANDPSSNAQPREVFNSGDGEADQARGGGLGEPSSSSRSSPDEEDIGEDSDPARESLPRGDSQWRPRRKAITARNNLLLSPDASSNGEVHSRVSPSRGTVRHRPGHYDSRGPPPQHARLDWDIEARGRTSGNGQGNDDVSDGLFSSSVGNERGGEAFPEADGVADFDDAPSEMHCGGYTFDGAFDGVTASPLEDDVEEREDNVQDLRGGNVSHVVGLGGGVEEAKGEGCTEDPGNVIGTRECTVDERLWCRQDGCPYSVDGVGEDGSGGDSVTVGAGASAAGVHRLKRGRTCEQGPVQDTQTHGSATLQ 957
            +PA DPS    P    N+GD EAD+A GGG  EPS+SS S  DEEDI  DSD ARES  RGD++WRP R+   ARN                                                    + SGNGQ +DDV D LFSSSV N+ GG AFPEADGVADFDDAPSEM CG Y+FDG FDGV                                                     E TVDERLWCRQ+GCPYSVDG+G DGS GDSV  GAGA+AAGVHRLKRGRT EQGP QDTQT GSATLQ
Sbjct:   31 IPALDPS----PPPDVNTGDDEADEAPGGGFREPSTSSFSGSDEEDIDGDSDAARESPLRGDAKWRPWRRVDMARN----------------------------------------------------KYSGNGQEDDDVGDALFSSSVCNQGGGAAFPEADGVADFDDAPSEMDCGDYSFDGGFDGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTVDERLWCRQNGCPYSVDGLGGDGSSGDSVIAGAGANAAGVHRLKRGRTYEQGPFQDTQTDGSATLQ 284

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9019.20574.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9019.20574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FRR7_ECTSI	4.350e-63	47.74	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9019	contig	Ecto-sp13_S_contig9019:3969..5843 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	1875
Hectar predicted targeting category	other localisation
Exons	1
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-20_005090.1
Cds size	1875

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464175.4725811-CDS-Ecto-sp13_S_contig9019:3968..5843	1681464175.4725811-CDS-Ecto-sp13_S_contig9019:3968..5843	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9019 3969..5843 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9019.20574.1	prot_Ecto-sp13_S_contig9019.20574.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9019 3969..5843 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9019:3969..5843-
coding sequence from alignment at Ecto-sp13_S_contig9019:3969..5843-

protein sequence of mRNA_Ecto-sp13_S_contig9019.20574.1

>prot_Ecto-sp13_S_contig9019.20574.1 ID=prot_Ecto-sp13_S_contig9019.20574.1|Name=mRNA_Ecto-sp13_S_contig9019.20574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=625bp
ESQQQTQERVPANDPSSNAQPREVFNSGDGEADQARGGGLGEPSSSSRSS
PDEEDIGEDSDPARESLPRGDSQWRPRRKAITARNNLLLSPDASSNGEVH
SRVSPSRGTVRHRPGHYDSRGPPPQHARLDWDIEARGRTSGNGQGNDDVS
DGLFSSSVGNERGGEAFPEADGVADFDDAPSEMHCGGYTFDGAFDGVTAS
PLEDDVEEREDNVQDLRGGNVSHVVGLGGGVEEAKGEGCTEDPGNVIGTR
ECTVDERLWCRQDGCPYSVDGVGEDGSGGDSVTVGAGASAAGVHRLKRGR
TCEQGPVQDTQTHGSATLQVGWREMDVGRSRFHYGGGAGDPSPDGQGLAD
PQSNGRDTSVGRLGREMFHGGGADDPGPEGNAKYSCEGGVDGSGCGCGGS
CCRVNGSDSGGHGMGTGRTEATSPGDRGVEGGSIQKGYRSRGRGEDTQRR
ATPRMAHEALLVGGGDGLKLNDNMDRGSETAGRACVRGGSSASEGRASGR
PRSGLARPGETGSGSAARSSSVRVPRVILEPQSMIRLHGAGVNVTAANVR
LQSKADAIRKMARTVALRRKNEFGRRTGLTWSAKPDGGKGRARPGGKLCP
TPDAVYEAIWEKYGSAWERSVFQK*

mRNA from alignment at Ecto-sp13_S_contig9019:3969..5843-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9019.20574.1 ID=mRNA_Ecto-sp13_S_contig9019.20574.1|Name=mRNA_Ecto-sp13_S_contig9019.20574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9019:3969..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTCAGCAGCAAACACAAGAACGAGTGCCCGCTAACGACCCTTCTTC
CAATGCCCAGCCGCGAGAGGTCTTCAACTCTGGAGATGGCGAGGCAGACC
AAGCGCGGGGCGGTGGCCTAGGGGAGCCATCTTCTAGTTCTAGATCCAGC
CCTGACGAAGAGGACATCGGCGAAGACAGCGACCCAGCCAGAGAATCTCT
GCCACGAGGAGATTCCCAGTGGCGCCCTCGGAGGAAGGCCATTACGGCTA
GGAATAATCTTCTCCTGTCTCCAGATGCTTCAAGCAACGGCGAAGTCCAT
AGTAGAGTGAGCCCAAGCAGAGGCACTGTAAGGCACCGACCGGGACATTA
TGACAGTAGAGGTCCTCCGCCACAGCATGCAAGACTAGACTGGGATATCG
AAGCAAGAGGTCGTACCTCAGGCAACGGACAGGGAAACGATGATGTCAGC
GACGGGTTGTTCAGTTCGTCCGTGGGCAATGAGCGGGGTGGCGAGGCCTT
CCCCGAGGCAGATGGCGTGGCTGACTTTGACGACGCTCCTAGTGAGATGC
ATTGTGGGGGCTACACTTTTGACGGTGCTTTTGACGGTGTGACGGCGTCC
CCCCTGGAAGATGACGTAGAAGAGCGTGAGGACAACGTGCAGGATCTGAG
GGGTGGGAACGTTAGCCATGTTGTAGGCCTTGGCGGTGGTGTGGAGGAGG
CGAAAGGAGAAGGGTGTACTGAGGATCCGGGAAACGTTATTGGCACTCGC
GAGTGTACCGTAGACGAGCGCCTTTGGTGCCGACAGGATGGATGTCCCTA
TTCTGTCGATGGAGTTGGTGAAGATGGTAGCGGCGGTGACTCAGTGACTG
TCGGTGCAGGCGCGAGCGCCGCCGGCGTTCACCGGTTGAAGAGAGGAAGG
ACATGTGAGCAGGGACCCGTTCAGGATACACAGACGCACGGCAGCGCGAC
ATTGCAGGTTGGCTGGAGGGAGATGGATGTCGGGAGGTCTCGTTTTCATT
ATGGTGGTGGCGCTGGTGACCCGTCCCCCGACGGACAAGGCTTGGCAGAT
CCTCAGAGCAATGGACGGGACACGAGTGTCGGCCGATTAGGCCGTGAGAT
GTTTCACGGCGGTGGTGCAGACGACCCCGGACCGGAGGGAAATGCTAAGT
ATTCGTGCGAGGGTGGTGTTGATGGCAGCGGTTGTGGTTGCGGAGGTAGC
TGTTGTCGGGTGAACGGGAGCGACTCTGGTGGACACGGTATGGGGACAGG
CAGGACAGAAGCCACGTCCCCTGGCGACCGGGGGGTGGAGGGTGGAAGTA
TCCAGAAGGGGTATAGATCGCGGGGGCGAGGTGAGGATACCCAGAGGAGA
GCTACGCCCAGGATGGCTCATGAGGCATTGCTGGTCGGCGGTGGGGATGG
CCTCAAACTCAATGACAACATGGACCGAGGCAGTGAGACTGCAGGTAGAG
CTTGTGTGAGGGGTGGTAGCAGTGCGAGTGAAGGTAGAGCTAGTGGCCGG
CCTCGATCTGGGCTCGCAAGACCGGGGGAAACGGGGTCAGGGTCGGCCGC
TAGAAGCAGCTCCGTACGTGTTCCCAGGGTCATCTTGGAACCCCAAAGTA
TGATTAGGCTGCATGGAGCGGGCGTCAATGTAACCGCGGCGAACGTAAGG
CTTCAGTCCAAAGCAGACGCAATCCGCAAGATGGCTCGTACAGTGGCGCT
AAGGAGGAAGAATGAATTTGGGCGTCGTACGGGACTGACGTGGTCCGCTA
AGCCTGATGGTGGCAAAGGGAGGGCACGACCAGGAGGCAAGCTCTGTCCT
ACGCCGGATGCCGTCTATGAGGCGATATGGGAGAAGTATGGGAGTGCGTG
GGAAAGGTCCGTTTTTCAAAAGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9019:3969..5843-

>mRNA_Ecto-sp13_S_contig9019.20574.1 ID=mRNA_Ecto-sp13_S_contig9019.20574.1|Name=mRNA_Ecto-sp13_S_contig9019.20574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9019:3969..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTCAGCAGCAAACACAAGAACGAGTGCCCGCTAACGACCCTTCTTC
CAATGCCCAGCCGCGAGAGGTCTTCAACTCTGGAGATGGCGAGGCAGACC
AAGCGCGGGGCGGTGGCCTAGGGGAGCCATCTTCTAGTTCTAGATCCAGC
CCTGACGAAGAGGACATCGGCGAAGACAGCGACCCAGCCAGAGAATCTCT
GCCACGAGGAGATTCCCAGTGGCGCCCTCGGAGGAAGGCCATTACGGCTA
GGAATAATCTTCTCCTGTCTCCAGATGCTTCAAGCAACGGCGAAGTCCAT
AGTAGAGTGAGCCCAAGCAGAGGCACTGTAAGGCACCGACCGGGACATTA
TGACAGTAGAGGTCCTCCGCCACAGCATGCAAGACTAGACTGGGATATCG
AAGCAAGAGGTCGTACCTCAGGCAACGGACAGGGAAACGATGATGTCAGC
GACGGGTTGTTCAGTTCGTCCGTGGGCAATGAGCGGGGTGGCGAGGCCTT
CCCCGAGGCAGATGGCGTGGCTGACTTTGACGACGCTCCTAGTGAGATGC
ATTGTGGGGGCTACACTTTTGACGGTGCTTTTGACGGTGTGACGGCGTCC
CCCCTGGAAGATGACGTAGAAGAGCGTGAGGACAACGTGCAGGATCTGAG
GGGTGGGAACGTTAGCCATGTTGTAGGCCTTGGCGGTGGTGTGGAGGAGG
CGAAAGGAGAAGGGTGTACTGAGGATCCGGGAAACGTTATTGGCACTCGC
GAGTGTACCGTAGACGAGCGCCTTTGGTGCCGACAGGATGGATGTCCCTA
TTCTGTCGATGGAGTTGGTGAAGATGGTAGCGGCGGTGACTCAGTGACTG
TCGGTGCAGGCGCGAGCGCCGCCGGCGTTCACCGGTTGAAGAGAGGAAGG
ACATGTGAGCAGGGACCCGTTCAGGATACACAGACGCACGGCAGCGCGAC
ATTGCAGGTTGGCTGGAGGGAGATGGATGTCGGGAGGTCTCGTTTTCATT
ATGGTGGTGGCGCTGGTGACCCGTCCCCCGACGGACAAGGCTTGGCAGAT
CCTCAGAGCAATGGACGGGACACGAGTGTCGGCCGATTAGGCCGTGAGAT
GTTTCACGGCGGTGGTGCAGACGACCCCGGACCGGAGGGAAATGCTAAGT
ATTCGTGCGAGGGTGGTGTTGATGGCAGCGGTTGTGGTTGCGGAGGTAGC
TGTTGTCGGGTGAACGGGAGCGACTCTGGTGGACACGGTATGGGGACAGG
CAGGACAGAAGCCACGTCCCCTGGCGACCGGGGGGTGGAGGGTGGAAGTA
TCCAGAAGGGGTATAGATCGCGGGGGCGAGGTGAGGATACCCAGAGGAGA
GCTACGCCCAGGATGGCTCATGAGGCATTGCTGGTCGGCGGTGGGGATGG
CCTCAAACTCAATGACAACATGGACCGAGGCAGTGAGACTGCAGGTAGAG
CTTGTGTGAGGGGTGGTAGCAGTGCGAGTGAAGGTAGAGCTAGTGGCCGG
CCTCGATCTGGGCTCGCAAGACCGGGGGAAACGGGGTCAGGGTCGGCCGC
TAGAAGCAGCTCCGTACGTGTTCCCAGGGTCATCTTGGAACCCCAAAGTA
TGATTAGGCTGCATGGAGCGGGCGTCAATGTAACCGCGGCGAACGTAAGG
CTTCAGTCCAAAGCAGACGCAATCCGCAAGATGGCTCGTACAGTGGCGCT
AAGGAGGAAGAATGAATTTGGGCGTCGTACGGGACTGACGTGGTCCGCTA
AGCCTGATGGTGGCAAAGGGAGGGCACGACCAGGAGGCAAGCTCTGTCCT
ACGCCGGATGCCGTCTATGAGGCGATATGGGAGAAGTATGGGAGTGCGTG
GGAAAGGTCCGTTTTTCAAAAGTAG