mRNA_Ecto-sp13_S_contig9018.20573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9018.20573.1
Unique NamemRNA_Ecto-sp13_S_contig9018.20573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: D7FWQ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWQ7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.850e-33
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLAWS 213
            VSNGARVERLNW GDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLAWS
Sbjct:  535 VSNGARVERLNWMGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLAWS 597
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A286H1X1_9PROT (Malonyl-CoA decarboxylase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286H1X1_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 5.560e-15
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGL 204
            +SNGARVERLNW GD+S +GVK ++G+MVNY+Y L+EIE N+ QY  +G+V  S    GL
Sbjct:  422 LSNGARVERLNWLGDISGKGVKQAYGLMVNYLYKLNEIERNHEQYKGQGKVALSSGIKGL 481
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A2S6QHW8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha12_Bin1 TaxID=2013107 RepID=A0A2S6QHW8_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 7.550e-15
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 LAGVSLRQVSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGL 204
            L GV    +SNGARVER+NW  D+S +G+K S G+MVNY+Y L +I  N+  Y++K E+PAS +  GL
Sbjct:  405 LDGVEHFHLSNGARVERINWLADISPKGIKQSAGMMVNYLYPLDKILDNHESYVTKSEIPASNEVKGL 472
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A4R4DCC0_9PROT (Malonyl-CoA decarboxylase n=1 Tax=Paracraurococcus sp. NE82 TaxID=2527868 RepID=A0A4R4DCC0_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.940e-14
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLA 207
            +SNGARVERLNWR D+S +G+K SFG+MVNY+YD + IE N+ +Y  +G+ PA+     LA
Sbjct:  418 LSNGARVERLNWRADVSDKGLKESFGLMVNYLYDPARIEENHEEYAGEGKRPAASAIRRLA 478
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A327MA41_9PROT (Malonyl-CoA decarboxylase n=2 Tax=Roseicella TaxID=2730923 RepID=A0A327MA41_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 2.670e-14
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLAWS 213
            +SNGARVERLNW+GD+S +G+K SFG+MVNY+YD + IE  + +Y+ +G  PAS     LA S
Sbjct:  430 LSNGARVERLNWKGDVSEKGLKESFGLMVNYLYDPARIEEYHEEYVGEGRRPASAALRKLARS 492
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A4R2N722_9BURK (Malonyl-CoA decarboxylase n=1 Tax=Simplicispira metamorpha TaxID=80881 RepID=A0A4R2N722_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 4.970e-14
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGL 204
            + NGARVERLNW GD SS+G K S+G+MVNY+YDL  I+ + R  L++G+VPASKD   L
Sbjct:  424 LGNGARVERLNWAGDPSSKGQKQSYGLMVNYLYDLKRIDKH-RSLLAQGKVPASKDIESL 482
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A2H6IZM8_9BACT (Malonyl-CoA decarboxylase n=3 Tax=Bacteria TaxID=2 RepID=A0A2H6IZM8_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 6.740e-14
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGLAWS 213
            + NGAR+ER+NW GD S+RG++ S G+MVNY+YDL++IE N+  Y++ G++ ASK    L  S
Sbjct:  380 LGNGARLERINWLGDKSARGLRQSHGIMVNYLYDLNDIEKNHEAYVNMGKIAASKAVRSLVRS 442
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A8J6NDH3_9DELT (Malonyl-CoA decarboxylase n=1 Tax=Candidatus Desulfobia pelagia TaxID=2841692 RepID=A0A8J6NDH3_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 6.780e-14
Identity = 31/56 (55.36%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKD 192
            ++NGAR+ER+NW  DLS RG+K S+G+MVNY Y+LS+I+SN+ QY+S   + AS++
Sbjct:  415 LTNGARIERVNWLADLSDRGMKRSYGIMVNYYYELSDIDSNHEQYISSTLIAASRE 470
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A0A1VD05_9BURK (TRAP-type C4-dicarboxylate transport system, large permease component n=1 Tax=Acidovorax sp. MR-S7 TaxID=1268622 RepID=A0A0A1VD05_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 6.810e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   25 VSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGL 204
            + NGARVERLNW GD S++G+K SFG+MVNYVYDL  I+  +R  L++G VP S D  GL
Sbjct:  424 LGNGARVERLNWAGDPSAKGLKQSFGLMVNYVYDLKRID-RHRGMLAEGRVPVSSDIDGL 482
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BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Match: A0A2P1NK44_9BURK (Malonyl-CoA decarboxylase n=1 Tax=Pulveribacter suum TaxID=2116657 RepID=A0A2P1NK44_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 6.820e-14
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 LAGVSLRQVSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNNRQYLSKGEVPASKDAHGL 204
            L  V+   + NGARVERLNW GD S++GVK SFG+MVNY+YDL  ++ +  Q L++G +PAS +  GL
Sbjct:  420 LDAVARFHLGNGARVERLNWAGDPSAKGVKQSFGLMVNYLYDLKRLDRHRAQ-LAEGRIPASSEIDGL 486
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9018.20573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWQ7_ECTSI5.850e-3398.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A286H1X1_9PROT5.560e-1558.33Malonyl-CoA decarboxylase n=1 Tax=Caenispirillum b... [more]
A0A2S6QHW8_9PROT7.550e-1551.47Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A4R4DCC0_9PROT1.940e-1455.74Malonyl-CoA decarboxylase n=1 Tax=Paracraurococcus... [more]
A0A327MA41_9PROT2.670e-1455.56Malonyl-CoA decarboxylase n=2 Tax=Roseicella TaxID... [more]
A0A4R2N722_9BURK4.970e-1460.00Malonyl-CoA decarboxylase n=1 Tax=Simplicispira me... [more]
A0A2H6IZM8_9BACT6.740e-1450.79Malonyl-CoA decarboxylase n=3 Tax=Bacteria TaxID=2... [more]
A0A8J6NDH3_9DELT6.780e-1455.36Malonyl-CoA decarboxylase n=1 Tax=Candidatus Desul... [more]
A0A0A1VD05_9BURK6.810e-1460.00TRAP-type C4-dicarboxylate transport system, large... [more]
A0A2P1NK44_9BURK6.820e-1452.94Malonyl-CoA decarboxylase n=1 Tax=Pulveribacter su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9018contigEcto-sp13_S_contig9018:331..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D7FWQ7
Preferred nameMLYCD
Model size213
KEGG rclassRC00040,RC00561
KEGG koko:K00454,ko:K01578,ko:K18663
KEGG ReactionR00233,R03626,R07864,R07869
KEGG Pathwayko00410,ko00591,ko00592,ko00640,ko01100,ko01110,ko04146,ko04152,map00410,map00591,map00592,map00640,map01100,map01110,map04146,map04152
KEGG ModuleM00113
Hectar predicted targeting categoryother localisation
GOsGO:0002931,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006084,GO:0006085,GO:0006109,GO:0006139,GO:0006163,GO:0006164,GO:0006195,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009154,GO:0009165,GO:0009166,GO:0009259,GO:0009260,GO:0009261,GO:0009893,GO:0009894,GO:0009987,GO:0010565,GO:0010675,GO:0010906,GO:0015031,GO:0015833,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0030258,GO:0031323,GO:0031325,GO:0031329,GO:0031907,GO:0031974,GO:0031998,GO:0032787,GO:0033036,GO:0033365,GO:0033865,GO:0033866,GO:0033869,GO:0033875,GO:0034030,GO:0034031,GO:0034032,GO:0034033,GO:0034034,GO:0034404,GO:0034440,GO:0034613,GO:0034641,GO:0034654,GO:0034655,GO:0035383,GO:0035384,GO:0042579,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044271,GO:0044272,GO:0044273,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048522,GO:0050080,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070727,GO:0071616,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072330,GO:0072521,GO:0072522,GO:0072523,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090407,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2001293,GO:2001294
Exons2
EggNOG free text desc.malonyl-CoA decarboxylase activity
EggNOG OGsCOG1593@1,KOG3018@2759
EC1.13.11.12,3.6.4.12,4.1.1.9
Cds size213
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.4280224-CDS-Ecto-sp13_S_contig9018:330..4491681464175.4280224-CDS-Ecto-sp13_S_contig9018:330..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9018 331..449 +
1681464175.4427788-CDS-Ecto-sp13_S_contig9018:1059..11531681464175.4427788-CDS-Ecto-sp13_S_contig9018:1059..1153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9018 1060..1153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9018.20573.1prot_Ecto-sp13_S_contig9018.20573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9018 331..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9018.20573.1

>prot_Ecto-sp13_S_contig9018.20573.1 ID=prot_Ecto-sp13_S_contig9018.20573.1|Name=mRNA_Ecto-sp13_S_contig9018.20573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
LAGVSLRQVSNGARVERLNWRGDLSSRGVKNSFGVMVNYVYDLSEIESNN
RQYLSKGEVPASKDAHGLAWS
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mRNA from alignment at Ecto-sp13_S_contig9018:331..1153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9018.20573.1 ID=mRNA_Ecto-sp13_S_contig9018.20573.1|Name=mRNA_Ecto-sp13_S_contig9018.20573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=823bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9018:331..1153+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTGGTGTCTCTTTGAGACAGGTTTCCAACGGAGCGCGGGTAGAGCG
GCTGAATTGGAGGGGGGACCTCTCCTCGCGAGGTGTCAAGAACAGCTTCG
GCGTCATGGTTAACTATGTGTGAGTATGTTGGAGAGAGAGAGCTAGCGGA
GAGAGAGCGAAACGTGATGAAGAGGAGACAGGTAGACAGAGAGACATACA
GACAGCAAGACAGGCGGACAGATAGACAATACAGACAATAAGACGGACAG
ACAGACAGAAAAAGAGGCGCACACGGCACTGGCAGAAGGGGCAGAAACAC
GCGCGGCTTTGTTTGCCCTCACGAGTTGGGGTCTCCCGCAGCGATGGAGG
TGTGCTTGTGGCCCTTCGTCCCAGCTTTGGCTCACAAAGCATCCAGCGTA
CGCTTCGCTCCGAGGGCAAATTTTCAACAAAGCCCAATAGCTCCGTGGAT
TGAGTTTTCCACCATTTTTGGTGATTTTCCAAGCTTGGCTTTACCATTCT
TTTGTCTGTGGCTGGATTCGGAACCCGGGTTGCCTTCCACCACAATCAAG
ACATCCGTGCGAAAACCGGGAATCGTCCTCAACGGACGTCAGGAAATACT
CTCGACCACCATGATCTATCGTGTCCACCGCAGAGTAACAGCGAGCATCG
CCCATGCCAGGAGCGCCTCGTGCGAAAATCTCGGCACACACAAGGGTCCT
AATGTGTAAACTTGATCACTTCCCGCCAGGTACGATCTTTCGGAGATCGA
GTCGAACAACCGGCAGTACCTCTCGAAGGGCGAGGTCCCCGCATCCAAGG
ACGCGCACGGGCTCGCCTGGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9018:331..1153+

>mRNA_Ecto-sp13_S_contig9018.20573.1 ID=mRNA_Ecto-sp13_S_contig9018.20573.1|Name=mRNA_Ecto-sp13_S_contig9018.20573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9018:331..1153+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTGGTGTCTCTTTGAGACAGGTTTCCAACGGAGCGCGGGTAGAGCG
GCTGAATTGGAGGGGGGACCTCTCCTCGCGAGGTGTCAAGAACAGCTTCG
GCGTCATGGTTAACTATGTGTACGATCTTTCGGAGATCGAGTCGAACAAC
CGGCAGTACCTCTCGAAGGGCGAGGTCCCCGCATCCAAGGACGCGCACGG
GCTCGCCTGGTCT
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