mRNA_Ecto-sp13_S_contig90158.20571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90158.20571.1
Unique NamemRNA_Ecto-sp13_S_contig90158.20571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: A0A6H5K8H8_9PHAE (Catalase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H8_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.190e-21
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQASGAPRPRE 126
            SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS APRPRE
Sbjct:   57 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQASMAPRPRE 98
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: I2CCM5_9METZ (Catalase (Fragment) n=1 Tax=Haliclona manglaris TaxID=459962 RepID=I2CCM5_9METZ)

HSP 1 Score: 79.3 bits (194), Expect = 3.110e-17
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQ S
Sbjct:    6 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVS 40
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: C9DE76_9METZ (Catalase (Fragment) n=1 Tax=Leucilla nuttingi TaxID=73653 RepID=C9DE76_9METZ)

HSP 1 Score: 79.7 bits (195), Expect = 6.390e-17
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQASGAPRPR 123
            SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQ S   R R
Sbjct:   73 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVSFLFRDR 113
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: D3J8V7_9DIPT (Catalase (Fragment) n=1 Tax=Bironella gracilis TaxID=53566 RepID=D3J8V7_9DIPT)

HSP 1 Score: 75.5 bits (184), Expect = 6.820e-17
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQ 99
            SFIHTQKRNP THLKDPDMFWDFISLRPETTHQ
Sbjct:   13 SFIHTQKRNPSTHLKDPDMFWDFISLRPETTHQ 45
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: C9DE74_9METZ (Catalase (Fragment) n=1 Tax=Haliclona sp. KJP-2009 TaxID=666292 RepID=C9DE74_9METZ)

HSP 1 Score: 79.3 bits (194), Expect = 9.730e-17
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQ S
Sbjct:   74 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVS 108
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: C9DE70_9METZ (Catalase (Fragment) n=1 Tax=Haliclona (Haliclona) sp. KJP-2009 TaxID=666330 RepID=C9DE70_9METZ)

HSP 1 Score: 78.6 bits (192), Expect = 1.900e-16
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNPRTHLKDPDMFWDF+SLRPETTHQ S
Sbjct:   74 SFIHTQKRNPRTHLKDPDMFWDFVSLRPETTHQIS 108
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: E9KJP3_SCOSQ (Catalase (Fragment) n=1 Tax=Scolelepis squamata TaxID=95536 RepID=E9KJP3_SCOSQ)

HSP 1 Score: 77.0 bits (188), Expect = 2.630e-16
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            +FIHTQKRNP+THLKDPDMFWDFISLRPETTHQ S
Sbjct:   27 NFIHTQKRNPKTHLKDPDMFWDFISLRPETTHQVS 61
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: E7CZG1_9BIVA (Catalase (Fragment) n=1 Tax=Anadara sp. KJP-2011 TaxID=944639 RepID=E7CZG1_9BIVA)

HSP 1 Score: 78.2 bits (191), Expect = 2.660e-16
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNPRTHLKDPDMFWDFI+LRPETTHQ S
Sbjct:   74 SFIHTQKRNPRTHLKDPDMFWDFITLRPETTHQVS 108
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: A0A2P1JJM0_UPOPU (Catalase (Fragment) n=1 Tax=Upogebia pusilla TaxID=1267414 RepID=A0A2P1JJM0_UPOPU)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-16
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNP THLKDPDMFWDFISLRPETTHQ S
Sbjct:   17 SFIHTQKRNPATHLKDPDMFWDFISLRPETTHQVS 51
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BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Match: M5DCH0_9METZ (Catalase n=1 Tax=Leucosolenia complicata TaxID=433461 RepID=M5DCH0_9METZ)

HSP 1 Score: 79.3 bits (194), Expect = 3.540e-16
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQAS 105
            SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQ S
Sbjct:  159 SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQVS 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90158.20571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8H8_9PHAE3.190e-2197.62Catalase domain-containing protein n=1 Tax=Ectocar... [more]
I2CCM5_9METZ3.110e-1797.14Catalase (Fragment) n=1 Tax=Haliclona manglaris Ta... [more]
C9DE76_9METZ6.390e-1787.80Catalase (Fragment) n=1 Tax=Leucilla nuttingi TaxI... [more]
D3J8V7_9DIPT6.820e-1796.97Catalase (Fragment) n=1 Tax=Bironella gracilis Tax... [more]
C9DE74_9METZ9.730e-1797.14Catalase (Fragment) n=1 Tax=Haliclona sp. KJP-2009... [more]
C9DE70_9METZ1.900e-1694.29Catalase (Fragment) n=1 Tax=Haliclona (Haliclona) ... [more]
E9KJP3_SCOSQ2.630e-1691.43Catalase (Fragment) n=1 Tax=Scolelepis squamata Ta... [more]
E7CZG1_9BIVA2.660e-1694.29Catalase (Fragment) n=1 Tax=Anadara sp. KJP-2011 T... [more]
A0A2P1JJM0_UPOPU3.050e-1694.29Catalase (Fragment) n=1 Tax=Upogebia pusilla TaxID... [more]
M5DCH0_9METZ3.540e-1697.14Catalase n=1 Tax=Leucosolenia complicata TaxID=433... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90158contigEcto-sp13_S_contig90158:157..285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start0
Seed ortholog score78.2
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog51511.ENSCSAVP00000002051
Model size129
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.catalase activity
EggNOG OGs38BMC@33154,3BFAV@33208,3CSMT@33213,48809@7711,COG0753@1,KOG0047@2759
EC1.11.1.6
Cds size129
COG Functional cat.P
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.2398806-CDS-Ecto-sp13_S_contig90158:156..2851681464175.2398806-CDS-Ecto-sp13_S_contig90158:156..285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90158 157..285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90158.20571.1prot_Ecto-sp13_S_contig90158.20571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90158 157..285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90158.20571.1

>prot_Ecto-sp13_S_contig90158.20571.1 ID=prot_Ecto-sp13_S_contig90158.20571.1|Name=mRNA_Ecto-sp13_S_contig90158.20571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
SFIHTQKRNPRTHLKDPDMFWDFISLRPETTHQASGAPRPRE*
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mRNA from alignment at Ecto-sp13_S_contig90158:157..285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90158.20571.1 ID=mRNA_Ecto-sp13_S_contig90158.20571.1|Name=mRNA_Ecto-sp13_S_contig90158.20571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90158:157..285- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTCATCCACACGCAGAAGCGGAACCCGAGGACTCACCTTAAGGACCC
CGACATGTTCTGGGACTTCATCTCGCTGCGCCCTGAAACGACCCACCAGG
CAAGCGGGGCTCCCAGGCCCCGAGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90158:157..285-

>mRNA_Ecto-sp13_S_contig90158.20571.1 ID=mRNA_Ecto-sp13_S_contig90158.20571.1|Name=mRNA_Ecto-sp13_S_contig90158.20571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90158:157..285- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTCATCCACACGCAGAAGCGGAACCCGAGGACTCACCTTAAGGACCC
CGACATGTTCTGGGACTTCATCTCGCTGCGCCCTGAAACGACCCACCAGG
CAAGCGGGGCTCCCAGGCCCCGAGAGTAG
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