mRNA_Ecto-sp13_S_contig12478.2055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI) HSP 1 Score: 506 bits (1303), Expect = 1.670e-176 Identity = 263/268 (98.13%), Postives = 265/268 (98.88%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARA YEKAVAERKEG+AKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEE+DGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ
Sbjct: 190 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARANKYEKAVAERKEGAAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ-IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 456
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE) HSP 1 Score: 507 bits (1306), Expect = 1.560e-174 Identity = 263/268 (98.13%), Postives = 267/268 (99.63%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPF+GNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNF+VDPGSVVGVVGPNGSGKTTLFNLIAGVEE+DGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ IGDR+VNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ
Sbjct: 363 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFRGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFSVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ-IGDRKVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 629
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A835ZAC8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC8_9STRA) HSP 1 Score: 304 bits (779), Expect = 7.980e-97 Identity = 160/267 (59.93%), Postives = 198/267 (74.16%), Query Frame = 1
Query: 7 RWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT-GRA-SVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
RWLE YL+AF+G VIS+THDRYFLDNVA WILE+DRG+ +P++GNYSAWL KQ RL+ E +A AKRL EL WI+T G+A + SKAR +Y +L +L G+IVIP GPRLG S L V+DL K+Y R LFSG++F+++PG+ VG+VG NG+GKTTLFN+IAG E D GTV WG VGLVSQ R GLDP+K+A EI++G DT+ + VRAY AAFNL+GASQ+KLVG++SGGERNRVHLAKVLK
Sbjct: 236 RWLETYLQAFRGMVISVTHDRYFLDNVASWILEIDRGATIPYEGNYSAWLAAKQRRLNVERRGEAAEAKRLARELNWIQTRGQAGNTSKARMASYTARADRVSSARNRLSKLEGGQIVIPAGPRLGNSVLEVRDLKKEYDGRVLFSGLSFSLEPGATVGIVGANGTGKTTLFNIIAGTETPDAGTVTWGETVSVGLVSQTRQGLDPNKTAYAEIAQGEDTVDGMA-----VRAYVAAFNLKGASQEKLVGSLSGGERNRVHLAKVLK 497
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A7V2X8K0_9DELT (Energy-dependent translational throttle protein EttA n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V2X8K0_9DELT) HSP 1 Score: 281 bits (718), Expect = 2.420e-90 Identity = 147/271 (54.24%), Postives = 191/271 (70.48%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTG---RASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
+V WLE +LR ++GTVI++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QK++RL +E + K LE ELEWIR R + KAR YE +++ E ++ + +I +PPGPRLG + +DL+K YGDR LF G+NF++ PG +VGV+GPNG+GKTTLF LI G E++D GT+ G K+G V Q R LDP+KS EIS G DTIQ +G+R++N RAY A FN G Q K VG +SGGERNRVHLAK+LK+
Sbjct: 9 TVAWLEAHLRQYEGTVIAVTHDRYFLDNVAGWILELDRGRGIPWKGNYSSWLEQKKSRLQQEEKAETARQKTLERELEWIRMAPKARQAKGKARINAYEALLSQETE-----KRREDLEIYLPPGPRLGNLVIEAQDLTKGYGDRLLFEGLNFSLPPGGIVGVIGPNGAGKTTLFRLITGQEKADRGTIRIGETVKLGYVDQSRDQLDPEKSIWAEISGGKDTIQ-VGNREINSRAYVARFNFTGTDQQKKVGMLSGGERNRVHLAKMLKE 273
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A7W0G2J7_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W0G2J7_9BACT) HSP 1 Score: 278 bits (712), Expect = 1.160e-87 Identity = 146/270 (54.07%), Postives = 189/270 (70.00%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
SV WLE +L+ + GTVI++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QKQ RL +E ++++ K L+ ELEWIR GR + KAR +YE + E+ E AK E +I IPPGPRLG+ + ++SK YG+R L G+ F + PG +VGV+GPNG+GKTTLF ++ G E+ D G++ G +G V Q R LDPDKS EEIS+G D +Q +G RQVN RAY FN G+ Q K VG++SGGERNRVHLAK+LK
Sbjct: 202 SVAWLEQHLQKYAGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKQQRLQQEQKQESERQKTLQRELEWIRMSPKGRQAKGKARINSYEALLNEQSEKLAK-----ELEIYIPPGPRLGQVVIESDEVSKGYGERLLVEGMTFKLPPGGIVGVIGPNGAGKTTLFRMVVGQEQPDAGSIRVGETVTLGYVDQSRDALDPDKSIWEEISDGLDVVQ-LGPRQVNSRAYVGRFNFSGSDQQKKVGSLSGGERNRVHLAKMLK 465
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: Q74CM9_GEOSL (Energy-dependent translational throttle protein EttA n=10 Tax=Geobacteraceae TaxID=213422 RepID=Q74CM9_GEOSL) HSP 1 Score: 276 bits (706), Expect = 3.380e-86 Identity = 144/271 (53.14%), Postives = 191/271 (70.48%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
+V WLE +L+++ GT+I++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QKQNRL +E +++ K L+ ELEWIR GR + SKAR +YE+ +++ E AK + +I IPPGPRLG + ++SK YGDR L G++F + PG +VGV+GPNG+GKTTLF +I G EE D GT+ G K+ V Q R LDP+KS EEIS G +T+Q +G VN RAY + FN G+ Q K VG +SGGERNRVH+AK+LK+
Sbjct: 200 TVAWLEHHLQSYPGTIIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQNRLAQEEKAESERQKTLQRELEWIRMSPKGRHAKSKARISSYEQLLSQESERRAK-----DLEIYIPPGPRLGDIVIEADNVSKAYGDRLLVEGMSFRLPPGGIVGVIGPNGAGKTTLFRMITGQEEPDAGTIRTGETVKIAYVDQSRDALDPNKSIWEEISGGQETLQ-LGKVSVNSRAYVSRFNFSGSDQQKKVGMLSGGERNRVHIAKMLKE 464
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: W7TRE6_9STRA (Abc transporter atp-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE6_9STRA) HSP 1 Score: 276 bits (707), Expect = 5.450e-86 Identity = 147/269 (54.65%), Postives = 193/269 (71.75%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSG-LDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
SV WLE +L+ ++GTVI++THDRYFLDN+A W+LEVDRGSLLPF+GNY+ WL K RLD E K+A A+ L++ELEWIR SKAR K E E++ + K+ QL GKIVIPPGPRLG +TV++LSK+ + LF V+F ++ G++VGV+G NG GK+TLFN++ G E D G+V+ G +GLVSQ R LD KS EE+++ D I G R V+ RAY AAFNL+G+ Q+KLVG++SGGERNRVHLAKV+K+
Sbjct: 238 SVAWLERFLQEYRGTVIAVTHDRYFLDNIARWVLEVDRGSLLPFQGNYTQWLEHKAARLDLERGKEAAQARALQAELEWIRLRSKQASKARVKAVEVRRIEQQGLADKIHQLETGKIVIPPGPRLGDRVMTVENLSKRVSSKVLFDNVSFDLEAGAIVGVIGANGCGKSTLFNVLCGRAEPDAGSVQIGSTVSLGLVSQVRDQELDDRKSVYEEVAQSEDVIVLEG-RTVHTRAYLAAFNLKGSMQEKLVGSLSGGERNRVHLAKVMKR 505
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A5K7Z568_9DELT (Energy-dependent translational throttle protein EttA n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A5K7Z568_9DELT) HSP 1 Score: 275 bits (704), Expect = 6.900e-86 Identity = 145/270 (53.70%), Postives = 187/270 (69.26%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
SV WLE +L+ + GT+I++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QKQNRL +E ++ K L+ ELEWIR GR + SKAR YEK + + E AK E +I IPPGPRLG + + +SK YG++ L ++F + PG +VGV+GPNG+GKTTLF +I G E+ D G + G ++ V Q R LDP+K+ E IS+G DTIQ +GDRQVN RAY A FN G+ Q K VG +SGGERNRVHLA++LK
Sbjct: 202 SVAWLEQHLQQYAGTIIAVTHDRYFLDNVAGWILELDRGHGIPWKGNYSSWLEQKQNRLAKEEKSESDRQKTLQRELEWIRMAPKGRRAKSKARISAYEKLLGQESERLAK-----ELEIYIPPGPRLGNVVIEAEGVSKAYGEKLLVEDMSFRLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDKGAIATGETVRMAYVDQSRDVLDPEKNIWEMISDGNDTIQ-LGDRQVNSRAYVARFNFSGSDQQKKVGVLSGGERNRVHLARMLK 465
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0LQI3_SYNFM (Energy-dependent translational throttle protein EttA n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) TaxID=335543 RepID=A0LQI3_SYNFM) HSP 1 Score: 275 bits (704), Expect = 7.080e-86 Identity = 144/271 (53.14%), Postives = 189/271 (69.74%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
+V WLE +L+ + GT+I++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QK+ RL +E +++ K +E ELEWIR GR + S+AR +YE + + E A+ E +I IPPGPRLG + D+SK YGDR L G++FT+ PG ++GV+GPNG+GKTTLF +I G E+ D GT+ G K+ V Q R LDP+K+ E ISEG DTI+ +G RQVN RAYTA F G Q K VG +SGGERNRVHLA++LK+
Sbjct: 202 TVAWLEHHLQQYPGTIIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKRVRLQQEEKAESERRKTMERELEWIRMSPKGRHAKSRARINSYEMLLQQDNEKRAR-----ELEIYIPPGPRLGDVVIEAADVSKAYGDRLLVEGMSFTLPPGGIIGVIGPNGAGKTTLFRMITGAEQPDSGTIRLGETVKLAYVEQTRDVLDPEKNIWEVISEGRDTIE-LGTRQVNSRAYTARFGFSGTDQQKKVGLLSGGERNRVHLARILKE 466
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: M4V8U9_9PROT (Energy-dependent translational throttle protein EttA n=1 Tax=Pseudobdellovibrio exovorus JSS TaxID=1184267 RepID=M4V8U9_9PROT) HSP 1 Score: 275 bits (703), Expect = 9.250e-86 Identity = 151/272 (55.51%), Postives = 191/272 (70.22%), Query Frame = 1
Query: 1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTG---RASVSKARAKNYEKAVAERKEGSA-KLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
SV WLE YL F GTVI++THDRYFLDNVAGWILE+DRG +P+KGNYS+WL QK RL++E +Q++ AK LE ELEWIR G R S SKAR YE + KE SA K+Q+LS I IPPGPRLG + + ++K +G + L GV+FT+ G++VGV+GPNG GK+TLF +I G E+ DGGT + G K+ V Q R LDP+KS EE+S G D IQ +G R++N R Y + FN G+ Q K VG +SGGERNRV+LAK+LKQ
Sbjct: 201 SVAWLEQYLAKFPGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKDKRLNQESKEQSRKAKTLERELEWIRQGAKGRQSKSKARISAYENLL---KEPSAEKMQELS---IYIPPGPRLGDIVVEAQGVTKGFGKKLLLDGVDFTIPRGAIVGVIGPNGVGKSTLFKMITGKEQPDGGTFKVGDTVKIAYVDQTRETLDPNKSIFEELSGGQDVIQ-LGGREINARQYVSWFNFSGSDQQKKVGALSGGERNRVNLAKILKQ 465 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12478.2055.1 >prot_Ecto-sp13_S_contig12478.2055.1 ID=prot_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAback to top mRNA from alignment at Ecto-sp13_S_contig12478:1051..5042+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12478.2055.1 ID=mRNA_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12478:1051..5042+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12478:1051..5042+ >mRNA_Ecto-sp13_S_contig12478.2055.1 ID=mRNA_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12478:1051..5042+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |