mRNA_Ecto-sp13_S_contig12478.2055.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12478.2055.1
Unique NamemRNA_Ecto-sp13_S_contig12478.2055.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: D7FX01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX01_ECTSI)

HSP 1 Score: 506 bits (1303), Expect = 1.670e-176
Identity = 263/268 (98.13%), Postives = 265/268 (98.88%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARA  YEKAVAERKEG+AKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEE+DGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ
Sbjct:  190 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARANKYEKAVAERKEGAAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ-IGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 456          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A6H5JQX9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX9_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 1.560e-174
Identity = 263/268 (98.13%), Postives = 267/268 (99.63%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPF+GNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNF+VDPGSVVGVVGPNGSGKTTLFNLIAGVEE+DGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ IGDR+VNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ
Sbjct:  363 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFRGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFSVDPGSVVGVVGPNGSGKTTLFNLIAGVEEADGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQ-IGDRKVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 629          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A835ZAC8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC8_9STRA)

HSP 1 Score: 304 bits (779), Expect = 7.980e-97
Identity = 160/267 (59.93%), Postives = 198/267 (74.16%), Query Frame = 1
Query:    7 RWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT-GRA-SVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
            RWLE YL+AF+G VIS+THDRYFLDNVA WILE+DRG+ +P++GNYSAWL  KQ RL+ E   +A  AKRL  EL WI+T G+A + SKAR  +Y            +L +L  G+IVIP GPRLG S L V+DL K+Y  R LFSG++F+++PG+ VG+VG NG+GKTTLFN+IAG E  D GTV WG    VGLVSQ R GLDP+K+A  EI++G DT+  +      VRAY AAFNL+GASQ+KLVG++SGGERNRVHLAKVLK
Sbjct:  236 RWLETYLQAFRGMVISVTHDRYFLDNVASWILEIDRGATIPYEGNYSAWLAAKQRRLNVERRGEAAEAKRLARELNWIQTRGQAGNTSKARMASYTARADRVSSARNRLSKLEGGQIVIPAGPRLGNSVLEVRDLKKEYDGRVLFSGLSFSLEPGATVGIVGANGTGKTTLFNIIAGTETPDAGTVTWGETVSVGLVSQTRQGLDPNKTAYAEIAQGEDTVDGMA-----VRAYVAAFNLKGASQEKLVGSLSGGERNRVHLAKVLK 497          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A7V2X8K0_9DELT (Energy-dependent translational throttle protein EttA n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V2X8K0_9DELT)

HSP 1 Score: 281 bits (718), Expect = 2.420e-90
Identity = 147/271 (54.24%), Postives = 191/271 (70.48%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTG---RASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            +V WLE +LR ++GTVI++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QK++RL +E   +    K LE ELEWIR     R +  KAR   YE  +++  E     ++  + +I +PPGPRLG   +  +DL+K YGDR LF G+NF++ PG +VGV+GPNG+GKTTLF LI G E++D GT+  G   K+G V Q R  LDP+KS   EIS G DTIQ +G+R++N RAY A FN  G  Q K VG +SGGERNRVHLAK+LK+
Sbjct:    9 TVAWLEAHLRQYEGTVIAVTHDRYFLDNVAGWILELDRGRGIPWKGNYSSWLEQKKSRLQQEEKAETARQKTLERELEWIRMAPKARQAKGKARINAYEALLSQETE-----KRREDLEIYLPPGPRLGNLVIEAQDLTKGYGDRLLFEGLNFSLPPGGIVGVIGPNGAGKTTLFRLITGQEKADRGTIRIGETVKLGYVDQSRDQLDPEKSIWAEISGGKDTIQ-VGNREINSRAYVARFNFTGTDQQKKVGMLSGGERNRVHLAKMLKE 273          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A7W0G2J7_9BACT (Energy-dependent translational throttle protein EttA (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W0G2J7_9BACT)

HSP 1 Score: 278 bits (712), Expect = 1.160e-87
Identity = 146/270 (54.07%), Postives = 189/270 (70.00%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
            SV WLE +L+ + GTVI++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QKQ RL +E  ++++  K L+ ELEWIR    GR +  KAR  +YE  + E+ E  AK     E +I IPPGPRLG+  +   ++SK YG+R L  G+ F + PG +VGV+GPNG+GKTTLF ++ G E+ D G++  G    +G V Q R  LDPDKS  EEIS+G D +Q +G RQVN RAY   FN  G+ Q K VG++SGGERNRVHLAK+LK
Sbjct:  202 SVAWLEQHLQKYAGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKQQRLQQEQKQESERQKTLQRELEWIRMSPKGRQAKGKARINSYEALLNEQSEKLAK-----ELEIYIPPGPRLGQVVIESDEVSKGYGERLLVEGMTFKLPPGGIVGVIGPNGAGKTTLFRMVVGQEQPDAGSIRVGETVTLGYVDQSRDALDPDKSIWEEISDGLDVVQ-LGPRQVNSRAYVGRFNFSGSDQQKKVGSLSGGERNRVHLAKMLK 465          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: Q74CM9_GEOSL (Energy-dependent translational throttle protein EttA n=10 Tax=Geobacteraceae TaxID=213422 RepID=Q74CM9_GEOSL)

HSP 1 Score: 276 bits (706), Expect = 3.380e-86
Identity = 144/271 (53.14%), Postives = 191/271 (70.48%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            +V WLE +L+++ GT+I++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QKQNRL +E   +++  K L+ ELEWIR    GR + SKAR  +YE+ +++  E  AK     + +I IPPGPRLG   +   ++SK YGDR L  G++F + PG +VGV+GPNG+GKTTLF +I G EE D GT+  G   K+  V Q R  LDP+KS  EEIS G +T+Q +G   VN RAY + FN  G+ Q K VG +SGGERNRVH+AK+LK+
Sbjct:  200 TVAWLEHHLQSYPGTIIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLDQKQNRLAQEEKAESERQKTLQRELEWIRMSPKGRHAKSKARISSYEQLLSQESERRAK-----DLEIYIPPGPRLGDIVIEADNVSKAYGDRLLVEGMSFRLPPGGIVGVIGPNGAGKTTLFRMITGQEEPDAGTIRTGETVKIAYVDQSRDALDPNKSIWEEISGGQETLQ-LGKVSVNSRAYVSRFNFSGSDQQKKVGMLSGGERNRVHIAKMLKE 464          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: W7TRE6_9STRA (Abc transporter atp-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRE6_9STRA)

HSP 1 Score: 276 bits (707), Expect = 5.450e-86
Identity = 147/269 (54.65%), Postives = 193/269 (71.75%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSG-LDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            SV WLE +L+ ++GTVI++THDRYFLDN+A W+LEVDRGSLLPF+GNY+ WL  K  RLD E  K+A  A+ L++ELEWIR      SKAR K  E    E++  + K+ QL  GKIVIPPGPRLG   +TV++LSK+   + LF  V+F ++ G++VGV+G NG GK+TLFN++ G  E D G+V+ G    +GLVSQ R   LD  KS  EE+++  D I   G R V+ RAY AAFNL+G+ Q+KLVG++SGGERNRVHLAKV+K+
Sbjct:  238 SVAWLERFLQEYRGTVIAVTHDRYFLDNIARWVLEVDRGSLLPFQGNYTQWLEHKAARLDLERGKEAAQARALQAELEWIRLRSKQASKARVKAVEVRRIEQQGLADKIHQLETGKIVIPPGPRLGDRVMTVENLSKRVSSKVLFDNVSFDLEAGAIVGVIGANGCGKSTLFNVLCGRAEPDAGSVQIGSTVSLGLVSQVRDQELDDRKSVYEEVAQSEDVIVLEG-RTVHTRAYLAAFNLKGSMQEKLVGSLSGGERNRVHLAKVMKR 505          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0A5K7Z568_9DELT (Energy-dependent translational throttle protein EttA n=7 Tax=Proteobacteria TaxID=1224 RepID=A0A5K7Z568_9DELT)

HSP 1 Score: 275 bits (704), Expect = 6.900e-86
Identity = 145/270 (53.70%), Postives = 187/270 (69.26%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLK 801
            SV WLE +L+ + GT+I++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QKQNRL +E   ++   K L+ ELEWIR    GR + SKAR   YEK + +  E  AK     E +I IPPGPRLG   +  + +SK YG++ L   ++F + PG +VGV+GPNG+GKTTLF +I G E+ D G +  G   ++  V Q R  LDP+K+  E IS+G DTIQ +GDRQVN RAY A FN  G+ Q K VG +SGGERNRVHLA++LK
Sbjct:  202 SVAWLEQHLQQYAGTIIAVTHDRYFLDNVAGWILELDRGHGIPWKGNYSSWLEQKQNRLAKEEKSESDRQKTLQRELEWIRMAPKGRRAKSKARISAYEKLLGQESERLAK-----ELEIYIPPGPRLGNVVIEAEGVSKAYGEKLLVEDMSFRLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDKGAIATGETVRMAYVDQSRDVLDPEKNIWEMISDGNDTIQ-LGDRQVNSRAYVARFNFSGSDQQKKVGVLSGGERNRVHLARMLK 465          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: A0LQI3_SYNFM (Energy-dependent translational throttle protein EttA n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) TaxID=335543 RepID=A0LQI3_SYNFM)

HSP 1 Score: 275 bits (704), Expect = 7.080e-86
Identity = 144/271 (53.14%), Postives = 189/271 (69.74%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRT---GRASVSKARAKNYEKAVAERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            +V WLE +L+ + GT+I++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QK+ RL +E   +++  K +E ELEWIR    GR + S+AR  +YE  + +  E  A+     E +I IPPGPRLG   +   D+SK YGDR L  G++FT+ PG ++GV+GPNG+GKTTLF +I G E+ D GT+  G   K+  V Q R  LDP+K+  E ISEG DTI+ +G RQVN RAYTA F   G  Q K VG +SGGERNRVHLA++LK+
Sbjct:  202 TVAWLEHHLQQYPGTIIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKRVRLQQEEKAESERRKTMERELEWIRMSPKGRHAKSRARINSYEMLLQQDNEKRAR-----ELEIYIPPGPRLGDVVIEAADVSKAYGDRLLVEGMSFTLPPGGIIGVIGPNGAGKTTLFRMITGAEQPDSGTIRLGETVKLAYVEQTRDVLDPEKNIWEVISEGRDTIE-LGTRQVNSRAYTARFGFSGTDQQKKVGLLSGGERNRVHLARILKE 466          
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Match: M4V8U9_9PROT (Energy-dependent translational throttle protein EttA n=1 Tax=Pseudobdellovibrio exovorus JSS TaxID=1184267 RepID=M4V8U9_9PROT)

HSP 1 Score: 275 bits (703), Expect = 9.250e-86
Identity = 151/272 (55.51%), Postives = 191/272 (70.22%), Query Frame = 1
Query:    1 SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSAWLVQKQNRLDREHSKQAQVAKRLESELEWIRTG---RASVSKARAKNYEKAVAERKEGSA-KLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNFTVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQGRSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVGTMSGGERNRVHLAKVLKQ 804
            SV WLE YL  F GTVI++THDRYFLDNVAGWILE+DRG  +P+KGNYS+WL QK  RL++E  +Q++ AK LE ELEWIR G   R S SKAR   YE  +   KE SA K+Q+LS   I IPPGPRLG   +  + ++K +G + L  GV+FT+  G++VGV+GPNG GK+TLF +I G E+ DGGT + G   K+  V Q R  LDP+KS  EE+S G D IQ +G R++N R Y + FN  G+ Q K VG +SGGERNRV+LAK+LKQ
Sbjct:  201 SVAWLEQYLAKFPGTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKDKRLNQESKEQSRKAKTLERELEWIRQGAKGRQSKSKARISAYENLL---KEPSAEKMQELS---IYIPPGPRLGDIVVEAQGVTKGFGKKLLLDGVDFTIPRGAIVGVIGPNGVGKSTLFKMITGKEQPDGGTFKVGDTVKIAYVDQTRETLDPNKSIFEELSGGQDVIQ-LGGREINARQYVSWFNFSGSDQQKKVGALSGGERNRVNLAKILKQ 465          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12478.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX01_ECTSI1.670e-17698.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQX9_9PHAE1.560e-17498.13ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZAC8_9STRA7.980e-9759.93P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7V2X8K0_9DELT2.420e-9054.24Energy-dependent translational throttle protein Et... [more]
A0A7W0G2J7_9BACT1.160e-8754.07Energy-dependent translational throttle protein Et... [more]
Q74CM9_GEOSL3.380e-8653.14Energy-dependent translational throttle protein Et... [more]
W7TRE6_9STRA5.450e-8654.65Abc transporter atp-binding protein n=2 Tax=Nannoc... [more]
A0A5K7Z568_9DELT6.900e-8653.70Energy-dependent translational throttle protein Et... [more]
A0LQI3_SYNFM7.080e-8653.14Energy-dependent translational throttle protein Et... [more]
M4V8U9_9PROT9.250e-8655.51Energy-dependent translational throttle protein Et... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12478contigEcto-sp13_S_contig12478:1051..5042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score508.8
Seed ortholog evalue1.5e-141
Seed eggNOG ortholog2880.D7FX01
Model size804
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
Cds size804
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12478.2055.1prot_Ecto-sp13_S_contig12478.2055.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12478 1051..5042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.7854323-CDS-Ecto-sp13_S_contig12478:1050..11181681462664.7854323-CDS-Ecto-sp13_S_contig12478:1050..1118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 1051..1118 +
1681462664.7948825-CDS-Ecto-sp13_S_contig12478:1822..19521681462664.7948825-CDS-Ecto-sp13_S_contig12478:1822..1952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 1823..1952 +
1681462664.8044403-CDS-Ecto-sp13_S_contig12478:2567..27131681462664.8044403-CDS-Ecto-sp13_S_contig12478:2567..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 2568..2713 +
1681462664.8143225-CDS-Ecto-sp13_S_contig12478:3209..33451681462664.8143225-CDS-Ecto-sp13_S_contig12478:3209..3345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 3210..3345 +
1681462664.822691-CDS-Ecto-sp13_S_contig12478:3776..38751681462664.822691-CDS-Ecto-sp13_S_contig12478:3776..3875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 3777..3875 +
1681462664.8358474-CDS-Ecto-sp13_S_contig12478:4494..45811681462664.8358474-CDS-Ecto-sp13_S_contig12478:4494..4581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 4495..4581 +
1681462664.848607-CDS-Ecto-sp13_S_contig12478:4904..50421681462664.848607-CDS-Ecto-sp13_S_contig12478:4904..5042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12478 4905..5042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12478.2055.1

>prot_Ecto-sp13_S_contig12478.2055.1 ID=prot_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp
SVRWLEDYLRAFKGTVISITHDRYFLDNVAGWILEVDRGSLLPFKGNYSA
WLVQKQNRLDREHSKQAQVAKRLESELEWIRTGRASVSKARAKNYEKAVA
ERKEGSAKLQQLSEGKIVIPPGPRLGRSGLTVKDLSKKYGDRTLFSGVNF
TVDPGSVVGVVGPNGSGKTTLFNLIAGVEESDGGTVEWGRLAKVGLVSQG
RSGLDPDKSAIEEISEGGDTIQQIGDRQVNVRAYTAAFNLRGASQDKLVG
TMSGGERNRVHLAKVLKQ
back to top

mRNA from alignment at Ecto-sp13_S_contig12478:1051..5042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12478.2055.1 ID=mRNA_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3992bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12478:1051..5042+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTACGATGGCTGGAAGACTACCTGCGGGCGTTCAAGGGCACCGTGAT CAGCATCACTCACGACAGGTGGGCTGTACCACAGGCTGTGCCCAAAGGAA GCGTGACCAACGGGGTGAATGTGGTCTGCTTGCTCTGTAGCCACGACGTA CAGCAATCCACGATGACCTAGACTAGCTCTGCCGAAGAAGTGGCGTCAAA TCTCTGCAGGCACCAGCGGTAGCAGCGTGTAGATTCACTCGCGTTGGCCC GGCACACCCCACCAACCTTTTAGCATGCTCGTTTGGACCCTTAACCTTGC GCGCTGCCTTTGAGAAAAACGAATGAAACAGGGTTGGAACACCGTTCCGC CCGCACCTGCCTCTGAATGAACGCGTTGGCCGGGTCAAGGTGATTTCGCA TGTTGTGTATGTAGACACTTCAATGTGCGCCGGCTGGTCCGATGATGCGC ACGAAGATGCACAAGACTACGTGACCGTCCCGCCCTTGCGTGGCCCCGGC ACACACCCGCATGTGAAAGCTTGCTTGCTCGCCCCTCGCTCCATCTCTCG CGTATGATCGGCAGCGAAAAAATACGCTGAATGTGAAAGATTTGTAGGAA CGTGTGTGTTCAAGATGTGCTTTTTGGGATTTTGGACCGACCTGTTCTCA GACAGAAAGCCTGTAGGTTAGGCCCCGAGTAGAGCCGACGAAGGGGCAGC AGCAGCATCAGAAGCAGCGGCCGCGGCAGCACCAATAAGAACAGCAACAA CAACAAATTCTTGGGTGCGCAGGTACTTCTTGGACAACGTGGCCGGCTGG ATTCTCGAGGTGGACCGGGGCTCGCTGCTGCCGTTCAAGGGCAACTACTC GGCGTGGCTGGTGCAAAAGCAGAACCGCCTCGACAGGGAGCACTCCAAGC AGGTTAGACTCCAGTTTTGTGCTAGTTGTATCGGTTTACAATATGCCTTC GAGACGACAGGTAGGCCGGGCAGCACGTAACAAAAAAATAAACAGAATGG GATGGCATCCCAAGGGGGTGCCTTGTGGTGTTGCTTGCTTGCACGCACAT CGCCTACCTTTTTCCTGCCCTCTTACTTTGTTCCTCATCCACTCAAGTGC TTGTAACGGGGTCAACGGAGTAAACCACCACCCCCTGCGCGCACCGGAAC GAAGCGGGCGGTGTAGAGGGCCAGGCACAAAGCTGCCTGTGTTTTTTTTT TGGTGGTGGCGTTTTTTCCCGCCAGGAATTCCACAGGGCTACAATTGCAC ACGTGGAGTTCGATGGATGGTAAATTTGATGGTAATAGGATCGAGTGGTA TGGTAGGGGGTTTTGGATTCCATCACGTTTATCGCCTTGACGATCCCGTC AGCGTCCCATCCGATAATCGTACCATCCCATCCCATCTAGAATTTTCCAC GTCTCTATTCAGCGCCAGTAGCAAACTGTTATTGGAATTTGCCAATAATC AATGGTCTAACATCTAAGGCATGCATTCAAAACAAGAGCACGCCCCCCTC CATCGCACGCCGTTCAGGCCCAAGTGGCGAAGCGGCTCGAGTCGGAGCTG GAATGGATAAGGACAGGCAGGGCGAGCGTGAGCAAGGCGAGGGCCAAGAA CTACGAGAAAGCCGTCGCCGAGCGCAAGGAGGGTTCCGCCAAGCTGCAGC AATTGTCCGAGGGGTGAGACGTGAGACGTTGTGGTGGTGGTGTCGCTGTG GCTGGAGGTGGAAGTGGTGGTCATCTTGGCGAGAGGCAGCGACGGTGTTG GTGATGGTGATGGTGATGGTGTTGTTTTTGGTGTTGGTGTTGGTGTTGGT GTTGGCGGTGTTGATGTGTTCGCGTTGTGATGGTCATCAGGAGGGTATGA TAGCGATGGCGGTGTTGCAGAAAGTCCGAATTGCTCACCGGCGGAAGAAC GCGCTCGTTTTCACTGTATCCCCCCCGCGTACCCATGTGCTCCTCCCCTC GGCGTTCTCGAAACTTTTGCCTACGCTGCCCACCACACACAACCCACTCC CACATAACACGCCACACCACACGACCCCTGTCTATTCCGCACGATACACA CCACACCGTACAGCCCCCTTTTCCATCCCCCACAAGCACCACGCAACCCC TTCCCGCCCCACACAAACACACCACACGCCACACCCCTTTTGCCTGTTTG CTTCTACAGGAAGATCGTGATCCCGCCTGGACCGCGGTTGGGCCGCAGCG GGCTGACCGTGAAGGACCTTTCCAAGAAGTACGGGGACCGAACCCTTTTC AGCGGGGTCAACTTCACCGTCGATCCAGGGTCCGTGGTTGGCGTGGTGAG ATGAGGTGTTGTCGTCAGTCACTTAAGTCTTTCCATCATTTTTGGTTTGC TGTCCACGTTCCCGCTGAAGCTGAAGTTAATTGTCTTTGCGGCTGCTGCG GGGGACCTGACGAATTGGGAGGAAACACTACTGTCTTCGGGCTGTCCACG CTCCCGATCTTGATGCGTGCGTCATACAAGCCATTTTGAGGATGAAAAGC GCAGCAGTTTGCGATGGAAGGGTTTTCTAGCCCGTGGTGGTTCTAAAGGG TGGGGCGGGGAGGTCTTTCTTCGGTGTAAAGTTCGGTGGTATCTCCCTAA AACAGGATAGGATTGAGCCTGTTGATTGTCCCTGGAAAAGAAAGATCGGT GCACCAGGCCGCAATCCCTCTCTCTCTCGCTCTTGAATGTTGGCGTTAAT GGTGTCCCGCTCTGGTTCATTCGCAGGTGGGACCGAACGGGTCGGGCAAG ACGACGCTGTTCAACCTCATCGCGGGGGTCGAAGAGTCCGACGGGGGCAC CGTGGAGTGGGGACGGCTAGCAAAGGTACGTGGTAACCTTCAGCTACGGG GCGGTTTTATTACGCGAGGAAGATACCAACACTTCACGAAGACAAACGCG GTGTGTTGATTCGTGCGCCCTTCAAAGCGGTCCTGCTGAGATAGGTCTTG GATACGTTTGGACCCTCTAGGTGGACGGAGGCGTTCCAGAAAAACGAGGG AAAAATTGTCCGCGAGATTGGCGTGGGCGAGTCGCTCCTTGGGGTATCTA CTGAAGGAAGGATTCGGCTGTTTGTTAAGTGACTGTCGTTCCTGTGTTCG TGATCGAAGAGTTATGGAACAGGCGTTTGTTTGGTCTGATCTGTTCTGAC TTATTTTTGAGTCTCTTTTTCGATGTGCCGAAACGTTATATGGACCGCGC CCCACGAAGGCGAGGGTGTTGGCGTGTGGGGTTGGATCTACGTCGAGGGG CAGTGCCGCTTCTTCTGTTGTTACGTAAACTGTCACAAAACTTAATACCT GTTGTTTTGTCTTATGCATGGCATGCTTTGATTTCGATTTGCCTCCTGCT GCTGCTCCTGCCTGCTGCTGCTGCTGCTGCTGCTGTTGATGGTTGTTGTC CACCTTGGAACAACCTCGCCCTAATAATAATAAAACATACGAAGGTGGGG TTGGTGAGCCAGGGGAGGTCGGGTCTGGACCCCGACAAGTCGGCGATTGA AGAGATTTCTGAGGGAGGGGACACCATACAGGTAGGCTGGAGGTAGGGAA GATGTGGTGGTGGTGGGTGGGAAAAGGGGGGCTCGTGAGGCAGCTTGTGT GGTGGCGACGGCACGGCTTGTCTCAGATCGCATGAGATTTTGTACGTCGC GCCTGCAGTGGGGGCACGCACGCGCGTTGGTAGTGATATCTTAGCGAATT CATTTCTCACGAGTAGAACCTTTCTCAACATCTTGGCTCTCGGTGGTTTT GTGGATGGCGTTTTTTTTGTTTCATCGCTCCTGGACTGCTTACACAGCAC TTCCTGCCTGCCATCTATCGTGTTGCCGCCCTTCTTTGTCGTTTGTTTCG AGAGCAGATTGGGGATAGACAAGTCAACGTCAGGGCGTACACGGCCGCGT TTAATCTCAGGGGCGCGTCGCAGGACAAGCTGGTGGGCACGATGAGCGGG GGCGAGCGAAATAGGGTGCACCTCGCCAAGGTCCTCAAGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12478:1051..5042+

>mRNA_Ecto-sp13_S_contig12478.2055.1 ID=mRNA_Ecto-sp13_S_contig12478.2055.1|Name=mRNA_Ecto-sp13_S_contig12478.2055.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12478:1051..5042+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTACGATGGCTGGAAGACTACCTGCGGGCGTTCAAGGGCACCGTGAT
CAGCATCACTCACGACAGGTACTTCTTGGACAACGTGGCCGGCTGGATTC
TCGAGGTGGACCGGGGCTCGCTGCTGCCGTTCAAGGGCAACTACTCGGCG
TGGCTGGTGCAAAAGCAGAACCGCCTCGACAGGGAGCACTCCAAGCAGGC
CCAAGTGGCGAAGCGGCTCGAGTCGGAGCTGGAATGGATAAGGACAGGCA
GGGCGAGCGTGAGCAAGGCGAGGGCCAAGAACTACGAGAAAGCCGTCGCC
GAGCGCAAGGAGGGTTCCGCCAAGCTGCAGCAATTGTCCGAGGGGAAGAT
CGTGATCCCGCCTGGACCGCGGTTGGGCCGCAGCGGGCTGACCGTGAAGG
ACCTTTCCAAGAAGTACGGGGACCGAACCCTTTTCAGCGGGGTCAACTTC
ACCGTCGATCCAGGGTCCGTGGTTGGCGTGGTGGGACCGAACGGGTCGGG
CAAGACGACGCTGTTCAACCTCATCGCGGGGGTCGAAGAGTCCGACGGGG
GCACCGTGGAGTGGGGACGGCTAGCAAAGGTGGGGTTGGTGAGCCAGGGG
AGGTCGGGTCTGGACCCCGACAAGTCGGCGATTGAAGAGATTTCTGAGGG
AGGGGACACCATACAGCAGATTGGGGATAGACAAGTCAACGTCAGGGCGT
ACACGGCCGCGTTTAATCTCAGGGGCGCGTCGCAGGACAAGCTGGTGGGC
ACGATGAGCGGGGGCGAGCGAAATAGGGTGCACCTCGCCAAGGTCCTCAA
GCAG
back to top