mRNA_Ecto-sp13_S_contig90.20551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90.20551.1
Unique NamemRNA_Ecto-sp13_S_contig90.20551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90.20551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90contigEcto-sp13_S_contig90:19551..23558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size360
Hectar predicted targeting categorysignal anchor
Exons2
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.9834678-UTR-Ecto-sp13_S_contig90:19550..196591681464172.9834678-UTR-Ecto-sp13_S_contig90:19550..19659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig90 19551..19659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.9950466-CDS-Ecto-sp13_S_contig90:19659..198131681464172.9950466-CDS-Ecto-sp13_S_contig90:19659..19813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90 19660..19813 -
1681464173.005899-CDS-Ecto-sp13_S_contig90:23463..235581681464173.005899-CDS-Ecto-sp13_S_contig90:23463..23558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90 23464..23558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90.20551.1prot_Ecto-sp13_S_contig90.20551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90 19660..23558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90.20551.1

>prot_Ecto-sp13_S_contig90.20551.1 ID=prot_Ecto-sp13_S_contig90.20551.1|Name=mRNA_Ecto-sp13_S_contig90.20551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
CLTCCCCHACCVCGYLGSAGCPRPGARHEGKRVIVTGLRGATVFFCGSGG
AVIVVGCCRYLGCEKRGPLGIFFPVRHICARS*
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mRNA from alignment at Ecto-sp13_S_contig90:19551..23558-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90.20551.1 ID=mRNA_Ecto-sp13_S_contig90.20551.1|Name=mRNA_Ecto-sp13_S_contig90.20551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90:19551..23558- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTGACCTGCTGTTGCTGCCATGCGTGTTGTGTGTGCGGATACCTCGG
TTCCGCAGGCTGCCCCCGTCCTGGTGCTAGGCATGAGGGAAAACGGTGAG
AGCGAAGAATGATAGCGTTCATGGGTTGTAAACATATGTAACGTCTCCGC
ATCGAGAAGACTTTATAATGATTACACGCATATCCTACAACCTACTGTAT
CTACCGCAGTGTTGTCTGTAGCCAACTACGCTGTTTCTCACTCAAAAGTA
CAAAATAGTTTACATGCATACATTCGCACTTTTCCCCTGACTACATTGGG
CGCGTGGGACGAGTAAGATTCCCCCGCACCTGACGGGGCATGGACAGAAT
GTGGCGGATGTTGAGACGAACAGTTGTCCGTGAGGTGGAGGCCATGTACG
ACTGTAGATCACTGTTTGGAGCTCCATCCAACCTCTCCAAAATGCGGAAA
TCAGATGGTGCGAGCTATTTGTCATCCCACGCTGCACGGGGACTACGTAA
AAGAGTTTATGCCTGAACCCTCTGGCGGTCACTTGTGGCATTCAATCTAA
TGAAACAGTTACAGATACTCAGTCAAGATCCGCACAAAAGCCCATTTAGT
TGCTGTCGGGGTACCCCTTGAGAAAAAGAAACAAGCCCTGCCAAACATGG
AGATTCTTGGTTTTTGGAGCTAACTGCTTTGCTCTACAAGTCAGTTTCGG
AAAATCATATGCTTTCCGGAAACTCCGAGGAGATGGCACCGGTCGGGGAG
ATGAAATCGGTAGGGGAGATGGAACCGGTTGGGGAGGAGATGGAACCGGT
CGGAGAAATCGTTCAAGGGCACAAGGGTGCCCTGAAAAAAAAAGGAACGT
AACGCCCGCACCGGAGTCGGAGAGATCGCACCGGACCGACCGGTCGGAGA
GATGGCACTTGAGTGAAAAGAACACAACAAACATAAGAAAACGATCGCAC
CTGGTGCCATGCCTCCGCCCTTCGGCGGCCAGGATGAAGACTACGGCAGC
AGTATATAAAGATCATACTGAGAGTTTTATCCTCTCGCAACAGCGCGCAC
AATCATGAGGTGTATTTTCCGCCGGCAACCTTCTTGTAGGAGGATTCTCT
CTCAAGATGAAAATGGAAAGGGATGTCCATAAACCGGTATCCAGGGCCCT
TAAACACGCTGTTTAGTTTTGCTTCCACGTTCCCAATTTTTTTTAATCCT
ACTGTTTTGTTTGCTGATTTATTTCGAAAGTCTCTTAACAAGTCAAACTT
TGGAAGCAACTCGCTCCAACTTTCGGTGCCAGTTTTTTCCAAACTTTCAA
ATTTCCAAAAAATCCTCGGCCGCAAATCGAGGTTCTATGGCGGATGGATT
TGGAACTTTGGAAATGTGTGAAGTTTGGAAGTAAAATTGCAACAATTAAT
AGCTGCTTTTTTAAACGCCCCTTGCCGATGTAATGGGCTGGCCAGGTAGG
TAACAAATGGTGAGGGGGTTGCCTCGGGCTAGGTCAGTCGTCCAGGAGCT
GGAAAGGGCAAAAGAAAGGAGGAAGATTGCCCGCTGAATGGATGCAGTGG
GGTACGACCCGAGGATATCTGCGAGTCGCACGTTAACTTCAACAATGGAC
GCACACATAGGACAGAACATGAGCTAGCTCATCTATGTCCTGTAGATCAA
CATGTAGGAACCTTCAACCTTGCTCCGATCACCCGTGTCATACAGATACA
GATCACTTCGGAGAAACATGTCTCCGATCATTTATGTCTTACGGATCGCC
TCCGACCAAACATGCTCAGATCAAGTATGTCCTTCAGATCACCAGGGAGC
AGTCATGGTCGGATCACTCATGTCCTTCAGATCACCAGGGACATAACATT
CTCAGATCATCTGTGTCCTGTCGATTCCAACTGGCATTCCGTCCAAAAGA
TCTAGCTCGTTCTGTAGGAATATGATCTATCCTACATGTGTGTGTGAACC
TCTTTTGTTCGTGGTTTTTATATCTTTTGAGGGTGTCAAGTGGTGGAAGC
GGGGCGAGAAAAATAAAAATTGGCAACCACGTTGTCAGAACGTATGACTA
TCCTTCGCATACAGACTTACCAAAACCATGGCATTGCAAACGAATGGCAA
TGGTCTCAAGGCTAAAAACTTACTTGTTGAGAGTTTTACCCACTGCTCAA
GATTTAGAGCGGCCGCAGCCACAACAAACGAACGTTGTCAAACACCGAGG
ATCGGCGATTTTTATCCCCGGATGTTATGGGTTATTACCGGTAGGCTACA
CGGTTGGATCCGGGCGATGGGCATCCTTATAATAGAACGCGCTCAGGAAC
GCTGAGAAAACTGTCAAAGTTCGGTGATGTTGCGACATAGAAGAAGTAGC
CAAATTTTCGACAGAACGCTCGGGGACGTTGGAAGAGTAGGGTTCTTACA
AGTGTTCCGACCACATCGGACCGGAAGTCCACTGACGGCCAACCACCATG
GTCTCAGAAGACTTCGACAGACGGGTTTACGGATCTTCTCCTTGTGCCAC
TTACTGGCCTGGGCATGTGGGCCGGCGACCCACTACCGCCGTAGCACCGC
CTTGCTCCCACTCTCTTTCTGTACCTTCTCTCCTCGCCCAAATACAAACG
AAGAAAACTTGCCTGCCTTGTGTAGGGGGCGAAAGATACTTCGACCCTGG
GATCCTCCTACCACGTCACCTGCGGAAGGAGCCTACGTCTTCATTGGCGT
AACGGCGTACGTCTGATTATTTTTACCCGGTCACCTCAGAACATGGGGTT
TTTTCACCGATCATCTACAGCAGAGTGCGTGCCCGGAGTCGAGAAATACT
TCGTTTGGAAACAAGCTCGGGTGGCCCGATTCCCCAACTGGAAGAGGAGG
CAAGAAAAGACTCCACTTCCTATCAGCTCCAGAGGCTGGCACACCACCAG
AAGCCTTCTTTGTGACCACCTCGCTAGTTGTCTCTGCGGTACCCTCTCTC
TGGCACGCTAAGACTCTGTGGACACAAGGCTTGAACGGAATGGTGACACA
TGCGACTCCTCCTCTCGACCGAGGGGGCCCCGCATAACGCAATACCTTCC
GTGTACCCCAATATAAACAGTATGGCAATTCGAGCTGTTTCAATACACCT
CGGTTTGTTTCGTCTACGCCTTTGTCTACGCCATAAACAAACCTGCCCTT
TGGAAACAAAGCGTCTGTAAACATATTTCTCGACAAGTGAAGAGTTTTGA
CACCACCTGTGTTGCTCCCAATGGGAAAAATCGCCGTTCTCGTTTAGATA
GAAACAAAACTTATCCTGGCGCGTGCCTCCCCTGGACCTCATACAGAGGA
AAACACACGTTTCTCTCAAGGACTCGACACACAAGGCAGCTCAACAACTA
TCCATCGACTTGTGGGCCTTGGTTGCCACAATGAGTACTTGCTGCCAAGT
GCTCGCTAGTATGGATCACTCCACAAAATATTTTATCACGGGCCCTAAAG
TCAGTAGTGACCGCTCTCCTGAATTGTGAAGATACGTTCGGAGGTAAACT
CATTTGGGATTGCTATGTTGGGATCAAAGGTTAGGAGCAAGGAGTTGGAT
CGCCGCCTGAATAATACACTGATGAGAGGTGCCCATGTAGCAACCTTTTA
ACGTGAGAAACGTAAGAATGCTCACAAGACTACTCGCTGTCGTTGCAGTC
TTCTTCGTGGCCTCCTTTGTCACCACTGCTTTTAATATCGATGCCGTCTT
CGCTGCCGTCGTGCTCGTCGTCGTCGTTACTGCCATCGTCGCTAGAGTTA
TCGTGACTGGACTCAGAGGAGCCACAGTCTTCTTTTGCGGTTCTGGTGGC
GCAGTCATCGTTGTCGGCTGTTGTCGATATCTCGGTTGTGAGAAGCGGGG
ACCACTCGGCATATTTTTCCCTGTTAGGCATATTTGCGCGAGGTCTTGAA
ATGTTGTACATAAAAACGTCGACAAGATGTGTCAGGCAAAGAAGGAGCGA
CCAAGAAGACGGGAAAAATAATGGAGAAGACAAGACTAGTCTAATGGTTT
TAATGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90:19551..23558-

>mRNA_Ecto-sp13_S_contig90.20551.1 ID=mRNA_Ecto-sp13_S_contig90.20551.1|Name=mRNA_Ecto-sp13_S_contig90.20551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90:19551..23558- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTGACCTGCTGTTGCTGCCATGCGTGTTGTGTGTGCGGATACCTCGG
TTCCGCAGGCTGCCCCCGTCCTGGTGCTAGGCATGAGGGAAAACGAGTTA
TCGTGACTGGACTCAGAGGAGCCACAGTCTTCTTTTGCGGTTCTGGTGGC
GCAGTCATCGTTGTCGGCTGTTGTCGATATCTCGGTTGTGAGAAGCGGGG
ACCACTCGGCATATTTTTCCCTGTTAGGCATATTTGCGCGAGGTCTTGA
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