mRNA_Ecto-sp13_S_contig12475.2052.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12475.2052.1
Unique NamemRNA_Ecto-sp13_S_contig12475.2052.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12475.2052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12475contigEcto-sp13_S_contig12475:1576..4151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size449
Hectar predicted targeting categoryother localisation
Exons8
Cds size420
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12475.2052.1prot_Ecto-sp13_S_contig12475.2052.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12475 1576..4122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.587244-CDS-Ecto-sp13_S_contig12475:1575..16611681462664.587244-CDS-Ecto-sp13_S_contig12475:1575..1661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 1576..1661 +
1681462664.5979183-CDS-Ecto-sp13_S_contig12475:2147..21981681462664.5979183-CDS-Ecto-sp13_S_contig12475:2147..2198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 2148..2198 +
1681462664.6074526-CDS-Ecto-sp13_S_contig12475:2479..25301681462664.6074526-CDS-Ecto-sp13_S_contig12475:2479..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 2480..2530 +
1681462664.6156285-CDS-Ecto-sp13_S_contig12475:2820..28711681462664.6156285-CDS-Ecto-sp13_S_contig12475:2820..2871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 2821..2871 +
1681462664.623386-CDS-Ecto-sp13_S_contig12475:3110..31611681462664.623386-CDS-Ecto-sp13_S_contig12475:3110..3161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 3111..3161 +
1681462664.6371534-CDS-Ecto-sp13_S_contig12475:3466..35171681462664.6371534-CDS-Ecto-sp13_S_contig12475:3466..3517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 3467..3517 +
1681462664.6481957-CDS-Ecto-sp13_S_contig12475:3816..38671681462664.6481957-CDS-Ecto-sp13_S_contig12475:3816..3867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 3817..3867 +
1681462664.6570392-CDS-Ecto-sp13_S_contig12475:4094..41221681462664.6570392-CDS-Ecto-sp13_S_contig12475:4094..4122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12475 4095..4122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462664.6649504-UTR-Ecto-sp13_S_contig12475:4122..41511681462664.6649504-UTR-Ecto-sp13_S_contig12475:4122..4151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12475 4123..4151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12475.2052.1

>prot_Ecto-sp13_S_contig12475.2052.1 ID=prot_Ecto-sp13_S_contig12475.2052.1|Name=mRNA_Ecto-sp13_S_contig12475.2052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
AFRSPPHTLRDRAYFRADAFAADGLAYQRAYSGVNAFADDGLAFIRAYFE
ANAFADDGLAYTRVYSGGNTFADNRLAYTRAYYGPHVFAEDRLAYARAYS
GANAFADDRPANTRAYSGPNDVADFRINHSSADSCNDVS*
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mRNA from alignment at Ecto-sp13_S_contig12475:1576..4151+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12475.2052.1 ID=mRNA_Ecto-sp13_S_contig12475.2052.1|Name=mRNA_Ecto-sp13_S_contig12475.2052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12475:1576..4151+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATTTCGCTCGCCCCCCCACACGCTTCGCGACAGGGCCTACTTTAGGGC
TGACGCCTTCGCCGCCGACGGTCTCGCCTACCAGAGGTGAAGCGCGCGGA
TTTCTGTTTTGTTTGTGCACGTGTGTATCACAGGCTTGTTGTTGTCTTCA
CATTAAAATCCGTTCCGATCTCTCCCTACCCAGTACCTTCATATGCCCGT
ACTGATCCAACACTTGACGCGGTCCATTCCCGTGGTCACAGGCTAACTTA
CCCTAAAAAGGTACACTCAAATAAACTGGCCCCGAGGGGTCCGCAAGTCA
ATCGAAATCAACCACCTCTACCTGTACGTAAATGTCGAGATCTTCAGCGC
AGAGTCCTCGAGAAGAGTGTGCCATGAAAGAGGCGTGGTCCATGCTCATT
TCGGTGATATCTTTCCTTCAGATAAGTGGAAATGTTCGAATGTCGGATTG
CCGCCGATGAACGTCGAACCGAGACGAACAACAGCCATTGAGGTTTCCCC
AGGGCGTCATGGGCCCACACCCACTGGGAATCTCTGTAATCCCCGCCCGC
TCCCTCACTCTCCTCGCAACAGGGCCTATTCCGGGGTAAACGCCTTCGCC
GACGATGGCCTCGCCTTTATCAGGTAAAGAGCGTTTTGGTATTGCACGCG
TATCAGCCTGTTCGGAAGCCTGAACTTGCCAAGACTGAATCCTCTACAGG
AGCGTGCTGTGATGAAATCGAGAAACATGCTCATTTCGAAGATATTCTTG
GGTCAGATTGGAGCAGCTGTTCGTAGTTATGGTTTGTTTCAAATGCATGT
CGAAACGTGGCTTGTAAACCGTTGCAGGTTCTTGATCTAATCATACCCCC
ACACCCGCGGTATATCTGGAACTTTCGCCCTCCCTCCCACTCATTTTGGG
ACAGGGCCTACTTCGAGGCCAACGCCTTCGCGGACGACGGCCTCGCCTAC
ACCAGGTGAAGCAAGCACGCTTCTGTTTTGATGATGCACGCGTTTATCAC
ATTCTTTGCGTGAAGCCTGAACTCGAGTCGTCGAGAAGAGTGTTGCATGG
AAAGATCGCGACCCTTGCTCATGTCGAAGCCACCGCGCAGTCAGACAATT
GTCGTTGTCCTTTTGTATGTTTTGTTGCATATGCATGATGAACCCGGGGG
TACAGCAAGTCAACGGGGGTTGGGGATAACTTCATGGTCCACATGCACAA
AAAATTCTGAATTTATCACCCGCTACCTGACACGCTTCGCGACAGGGTCT
ACTCCGGGGGCAACACCTTCGCAGACAACCGTCTCGCCTACACCAGGTAA
AGAGCGACCCTTCCTGTTTTGGGTGTGTGCGAATGTAGCAGAGCCTATAC
GGTAAGCCCGATGTATTCATGACAGATCCGCCTCGAGAAGAGTATGTACG
ATTTGTGGCGAATGCACGTTAAACGAGGGGAGCAAACGTTCTGGCGAGGT
ATTGCAGGTTACCGTTTTCTTCGTGGGCACACATCGTGAAACCCCTCTGC
TATCTTGGCCCACTCCACCTTCCTCGTCGCGACAGGGCCTACTACGGACC
CCACGTCTTCGCCGAGGACCGCCTCGCCTACGCCAGGTGAAGGGCGAAGG
GTCCTGTTTTAAAACTGTGTTCGCGTATGCTTACAGCCTCTTGGTCGAGC
CCGACGTCATCAGTTAAGTCTTTTGCGAGAAGAGTGTGACGTGAGAGAAT
GCTTTCGTTTCGAAGACACTACGCCGCCCGGTCGGGGGAGGTTCTCACAA
CCATGTCTGTGGCAAATTCGCGTCGAAACAAGGCGGGCATCGCTTGTGTC
CAACCCGTTGCAGGTCACCGATTCATTGATGCTCCGAAAGCCAATGGAAC
AGACTGTATTCCCGCCCTTTCCCCCACACCTTCCGGGACAGGGCCTACTC
CGGCGCCAACGCCTTTGCCGACGACCGTCCCGCCAACACCAGGTAAAGAG
CGCACGTTTTGTTGTTTTCGGGTGTGCTTGGATGTATGAAAGCCTCTAGG
GCACGCCGGAAGTCATCAGCACAGACGCCTCGAGATGAGTGTGCAATGAC
AGAACCGCGATCCGTGCGAATTTCGAAGACCTTGTGCCATCTGGAGAGGG
CGTTGTCAAGTTTCAGGGAGCGGGCATACACAGGCGAATCACAATAATAT
CCTCGGGAGGATCTGATATTGATGGTATTTCACGTACGTGCACAGGAACC
GGTTCTTTACCTCGCCCTTTGCCCAACACTCGTTGCGACAGGGCCTACTC
TGGGCCCAACGATGTCGCCGACTTCCGCATCAACCACTCTAGGTAATTCA
TGTTCTCCTTGTTGCGTTTGCGTCGACCGTGTTCTACAGGCACCAACTGC
CAAGCAGTTATGAGCTTGGCTTTCTCAAGCCGTGCTACACGTCCATTGGT
TCTATATTCCTTCAACTTAATGCGCGTTCTCGGCGTTTCTGTGGCCTCAC
TGTCCGCTTGCTGCTGCGCCTTTCTGGTACATTCCGCGAAATATTTCACG
GCAATTCCTCCAACGGAAGCGCCGATTCCTGCAACGACGTCTCCTGAGGT
GTATCCGAGTTTGGCTCCTCCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12475:1576..4151+

>mRNA_Ecto-sp13_S_contig12475.2052.1 ID=mRNA_Ecto-sp13_S_contig12475.2052.1|Name=mRNA_Ecto-sp13_S_contig12475.2052.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12475:1576..4151+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATTTCGCTCGCCCCCCCACACGCTTCGCGACAGGGCCTACTTTAGGGC
TGACGCCTTCGCCGCCGACGGTCTCGCCTACCAGAGGGCCTATTCCGGGG
TAAACGCCTTCGCCGACGATGGCCTCGCCTTTATCAGGGCCTACTTCGAG
GCCAACGCCTTCGCGGACGACGGCCTCGCCTACACCAGGGTCTACTCCGG
GGGCAACACCTTCGCAGACAACCGTCTCGCCTACACCAGGGCCTACTACG
GACCCCACGTCTTCGCCGAGGACCGCCTCGCCTACGCCAGGGCCTACTCC
GGCGCCAACGCCTTTGCCGACGACCGTCCCGCCAACACCAGGGCCTACTC
TGGGCCCAACGATGTCGCCGACTTCCGCATCAACCACTCTAGCGCCGATT
CCTGCAACGACGTCTCCTGA
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