prot_Ecto-sp13_S_contig8944.20471.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8944.20471.1
Unique Nameprot_Ecto-sp13_S_contig8944.20471.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length306
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.500e-20
Identity = 132/192 (68.75%), Postives = 136/192 (70.83%), Query Frame = 0 
Query:  115 TNATVQNPTTTVQQADPLSPGLDGAAPAPGGGGSGVGVEGVTGGGAAVSATAASPEVTPAV-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTAGPAGXXXXGAAAPTPATTAVGXXXXXXXXXXAAGPNGVAAXXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKV 305
            T+ATVQNPTT VQQA PLS GLDGAAPA GGGGSGVGVEGVTG              TPAV       XXXXXXXXXXXXXXXXXXXXXXXX        XXXX      P    VG          AAG +G+ A XXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQK+
Sbjct:   96 TDATVQNPTTIVQQAGPLSLGLDGAAPASGGGGSGVGVEGVTGXXXXXXXXXXXXXXTPAVPVPVAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGAGVGPIS-------AAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKI 280
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BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-9
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:  272 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKV 305
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQK+
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKI 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV94_9PHAE3.500e-2068.75HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2P1_ECTSI1.520e-997.06HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 258..305
e-value: 2.2E-5
score: 26.6
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 260..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8944contigEcto-sp13_S_contig8944:4855..6551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8944.20471.1mRNA_Ecto-sp13_S_contig8944.20471.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8944 4855..6551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8944.20471.1 ID=prot_Ecto-sp13_S_contig8944.20471.1|Name=mRNA_Ecto-sp13_S_contig8944.20471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
ASQEAWCIREGSRPRPHQIMADTGAAGAPASSLVAAAATAAASAATASAF
VGADGGGEGGSSGNGASSPAPGAPQAAAASSSSSSQLPPMSHSVSNAAAA
AAAAAAAATTTTPPTNATVQNPTTTVQQADPLSPGLDGAAPAPGGGGSGV
GVEGVTGGGAAVSATAASPEVTPAVAVPAAVTPAAATPAAATPAAVPQAA
VPQAVEPTAGPAGPAGPGAAAPTPATTAVGPAGAGVGPVGAAGPNGVAAA
ASTTGGGAGTSSGKKRASSGGQSKPQSAWMLFIQERREQVKRDNPDIAVT
QQQKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf