mRNA_Ecto-sp13_S_contig8944.20471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8944.20471.1
Unique NamemRNA_Ecto-sp13_S_contig8944.20471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.500e-20
Identity = 132/192 (68.75%), Postives = 136/192 (70.83%), Query Frame = 1 
Query:  343 TNATVQNPTTTVQQADPLSPGLDGAAPAPGGGGSGVGVEGVTGGGAAVSATAASPEVTPAV-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTAGPAGXXXXGAAAPTPATTAVGXXXXXXXXXXAAGPNGVAAXXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKV 915
            T+ATVQNPTT VQQA PLS GLDGAAPA GGGGSGVGVEGVTG              TPAV       XXXXXXXXXXXXXXXXXXXXXXXX        XXXX      P    VG          AAG +G+ A XXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQK+
Sbjct:   96 TDATVQNPTTIVQQAGPLSLGLDGAAPASGGGGSGVGVEGVTGXXXXXXXXXXXXXXTPAVPVPVAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGAGVGPIS-------AAGSDGILAAXXXXXXXXXXXXXXXXXXXXXQSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKI 280
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BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-9
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:  814 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKV 915
            QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQK+
Sbjct:  140 QSKPQSAWMLFIQERREQVKRDNPDIAVTQQQKI 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8944.20471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV94_9PHAE3.500e-2068.75HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D7G2P1_ECTSI1.520e-997.06HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8944contigEcto-sp13_S_contig8944:4855..6551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size919
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionDPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains
Ec32 orthologEc-11_002940.1
Cds size918
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464166.7776375-CDS-Ecto-sp13_S_contig8944:4854..56521681464166.7776375-CDS-Ecto-sp13_S_contig8944:4854..5652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8944 4855..5652 +
1681464166.7894082-CDS-Ecto-sp13_S_contig8944:6431..65511681464166.7894082-CDS-Ecto-sp13_S_contig8944:6431..6551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8944 6432..6551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8944.20471.1prot_Ecto-sp13_S_contig8944.20471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8944 4855..6551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8944.20471.1

>prot_Ecto-sp13_S_contig8944.20471.1 ID=prot_Ecto-sp13_S_contig8944.20471.1|Name=mRNA_Ecto-sp13_S_contig8944.20471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
ASQEAWCIREGSRPRPHQIMADTGAAGAPASSLVAAAATAAASAATASAF
VGADGGGEGGSSGNGASSPAPGAPQAAAASSSSSSQLPPMSHSVSNAAAA
AAAAAAAATTTTPPTNATVQNPTTTVQQADPLSPGLDGAAPAPGGGGSGV
GVEGVTGGGAAVSATAASPEVTPAVAVPAAVTPAAATPAAATPAAVPQAA
VPQAVEPTAGPAGPAGPGAAAPTPATTAVGPAGAGVGPVGAAGPNGVAAA
ASTTGGGAGTSSGKKRASSGGQSKPQSAWMLFIQERREQVKRDNPDIAVT
QQQKV*
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mRNA from alignment at Ecto-sp13_S_contig8944:4855..6551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8944.20471.1 ID=mRNA_Ecto-sp13_S_contig8944.20471.1|Name=mRNA_Ecto-sp13_S_contig8944.20471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8944:4855..6551+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCCCAAGAGGCCTGGTGCATTCGCGAAGGCAGCCGGCCCCGTCCACA
CCAAATCATGGCCGACACGGGCGCTGCTGGCGCCCCCGCCTCTTCCCTGG
TCGCCGCGGCGGCCACGGCGGCCGCTAGCGCCGCCACAGCTTCGGCCTTC
GTGGGCGCGGACGGTGGTGGCGAAGGCGGTAGTAGCGGCAACGGCGCCTC
ATCCCCCGCCCCCGGCGCGCCACAAGCAGCAGCAGCGTCGTCGTCGTCGT
CGTCACAGCTCCCTCCGATGTCTCACTCCGTGTCGAATGCCGCTGCGGCT
GCTGCGGCCGCCGCGGCCGCGGCGACGACTACGACACCCCCCACGAATGC
AACCGTGCAGAACCCTACCACAACCGTGCAGCAAGCGGATCCTCTGAGCC
CCGGCCTCGACGGCGCCGCCCCCGCCCCCGGCGGAGGCGGCAGCGGGGTG
GGGGTCGAAGGGGTGACCGGCGGTGGAGCGGCGGTGTCGGCGACCGCCGC
GAGTCCAGAGGTAACACCGGCGGTGGCGGTGCCGGCGGCAGTTACACCAG
CGGCGGCAACACCAGCGGCGGCGACACCAGCGGCGGTACCTCAAGCGGCG
GTGCCACAAGCGGTGGAACCAACAGCGGGACCGGCGGGACCGGCGGGACC
GGGGGCGGCGGCACCGACGCCGGCCACGACAGCGGTGGGACCGGCTGGGG
CTGGGGTTGGACCCGTAGGCGCGGCTGGCCCGAACGGTGTCGCGGCGGCG
GCGAGTACGACGGGAGGAGGGGCGGGGACGTCGTCGGGCAAGAAGCGGGT
AAGCGAGGCGGGGTTAGGGGTTCTTGTAATGCAGTTCTTCGGATATGAAA
ATCAAACCATGCACGTGAGGCGGGCAATTGGGACAACAAGCCCACCACAA
CCCTATATTGTTGTTTGGTGTTTTCATCGAAATGGAGCACAGCACGGGAT
GGTCCAGCCGCGGGAAAAGCACGATGTGTTGTTTCATGCATCAGTAACTC
GCAACACGAGCTGGCCGTGGTGTCACCCAAAGTGTAAGAGCCTTGTCTGC
GGCAGAGGGGGTGCGAGGGGTGGATGCGTTGCGCGGGCTATGTTTGCGAG
TGGTGTGCTTTTTATTGTGGACGTGCAATGTTCGCTTACTTTTGACGCGG
TTTGTTACGGGGCGGGGTATGGTGTCAAAGGTGTAGAAAATCAAGAAAAA
TGGAACATATCCATCATGTGTAACCCCCGGGTGATACGTCAGAAAACCTT
TGACAAAAGGTGTGTAGACTGGCGCCATTTCAGATTAGACCGAACGCACA
CATAGTAGCTTAGCCTCCCGCATCACACCCCCTCACGCAGTCCCAGATCA
CGGCAGCCCTGAGAAGCTTTTTCTCTTTTCAGCCGAACTAAGACTACGCC
TTTTCAGTGTTCAGACGGTTCGCGTGGTCGGGGCCGATCACAAAAAAAAC
ACACACACACTCACGGCCTGTTGGCAACGGGTCGTATGTGTGTCACGTGT
GGTGGAACCTGACGCGAGACGACGAGCTAAACAAGCACCTAACTATTTTT
TCTTGTTTTCTTTTTTGAGCTATGCAGGCGTCGTCGGGGGGGCAGTCGAA
GCCGCAGTCGGCGTGGATGCTGTTCATCCAGGAGCGGCGCGAGCAGGTCA
AGCGCGACAACCCGGACATCGCCGTCACACAGCAGCAGAAGGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8944:4855..6551+

>mRNA_Ecto-sp13_S_contig8944.20471.1 ID=mRNA_Ecto-sp13_S_contig8944.20471.1|Name=mRNA_Ecto-sp13_S_contig8944.20471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8944:4855..6551+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCCCAAGAGGCCTGGTGCATTCGCGAAGGCAGCCGGCCCCGTCCACA
CCAAATCATGGCCGACACGGGCGCTGCTGGCGCCCCCGCCTCTTCCCTGG
TCGCCGCGGCGGCCACGGCGGCCGCTAGCGCCGCCACAGCTTCGGCCTTC
GTGGGCGCGGACGGTGGTGGCGAAGGCGGTAGTAGCGGCAACGGCGCCTC
ATCCCCCGCCCCCGGCGCGCCACAAGCAGCAGCAGCGTCGTCGTCGTCGT
CGTCACAGCTCCCTCCGATGTCTCACTCCGTGTCGAATGCCGCTGCGGCT
GCTGCGGCCGCCGCGGCCGCGGCGACGACTACGACACCCCCCACGAATGC
AACCGTGCAGAACCCTACCACAACCGTGCAGCAAGCGGATCCTCTGAGCC
CCGGCCTCGACGGCGCCGCCCCCGCCCCCGGCGGAGGCGGCAGCGGGGTG
GGGGTCGAAGGGGTGACCGGCGGTGGAGCGGCGGTGTCGGCGACCGCCGC
GAGTCCAGAGGTAACACCGGCGGTGGCGGTGCCGGCGGCAGTTACACCAG
CGGCGGCAACACCAGCGGCGGCGACACCAGCGGCGGTACCTCAAGCGGCG
GTGCCACAAGCGGTGGAACCAACAGCGGGACCGGCGGGACCGGCGGGACC
GGGGGCGGCGGCACCGACGCCGGCCACGACAGCGGTGGGACCGGCTGGGG
CTGGGGTTGGACCCGTAGGCGCGGCTGGCCCGAACGGTGTCGCGGCGGCG
GCGAGTACGACGGGAGGAGGGGCGGGGACGTCGTCGGGCAAGAAGCGGGC
GTCGTCGGGGGGGCAGTCGAAGCCGCAGTCGGCGTGGATGCTGTTCATCC
AGGAGCGGCGCGAGCAGGTCAAGCGCGACAACCCGGACATCGCCGTCACA
CAGCAGCAGAAGGTGTGA
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