mRNA_Ecto-sp13_S_contig12468.2045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12468.2045.1
Unique NamemRNA_Ecto-sp13_S_contig12468.2045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12468.2045.1 vs. uniprot
Match: D8LI00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI00_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.830e-38
Identity = 169/186 (90.86%), Postives = 169/186 (90.86%), Query Frame = 1 
Query:  106 YSSGSESDGXXXXXXXXXRGGSKTGARRRSNSKTRGXXXXXXXXXXXXXXXXXXXXXXRGGARGXXXXXXXXXXXXXXXXXXGXXXXXXXXTPGGGRRGGKHGGGHRKKGXXXXXXXXXXXXXXXXXXXXXDGGRAAMRRAVKDWKVQNNIKGSVGKADKHLREEMKRVRQQAKRAHRGLLGAPKK 663
            YSS SESDGXXXXXXXXXRGGSKTGARRRSNSKTRGXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXX XXXXXXXX    GRRGGKHGGGHRKKG   XXXXXXXXXXXXXXXXXXDG RAAMRRAVKDWKVQNNIKGSVGK DKHLREEMKRVRQQAKRAHRGLLGAPKK
Sbjct:   68 YSSCSESDGXXXXXXXXXRGGSKTGARRRSNSKTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRGGKHGGGHRKKGKSGXXXXXXXXXXXXXXXXXXDGSRAAMRRAVKDWKVQNNIKGSVGKGDKHLREEMKRVRQQAKRAHRGLLGAPKK 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12468.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI00_ECTSI1.830e-3890.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12468contigEcto-sp13_S_contig12468:1815..4845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size666
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001190.1
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462663.9356084-CDS-Ecto-sp13_S_contig12468:1814..19401681462663.9356084-CDS-Ecto-sp13_S_contig12468:1814..1940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12468 1815..1940 +
1681462663.9485927-CDS-Ecto-sp13_S_contig12468:2813..31521681462663.9485927-CDS-Ecto-sp13_S_contig12468:2813..3152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12468 2814..3152 +
1681462663.9614496-CDS-Ecto-sp13_S_contig12468:3361..34901681462663.9614496-CDS-Ecto-sp13_S_contig12468:3361..3490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12468 3362..3490 +
1681462663.9733195-CDS-Ecto-sp13_S_contig12468:4773..48451681462663.9733195-CDS-Ecto-sp13_S_contig12468:4773..4845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12468 4774..4845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12468.2045.1prot_Ecto-sp13_S_contig12468.2045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12468 1815..4845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12468.2045.1

>prot_Ecto-sp13_S_contig12468.2045.1 ID=prot_Ecto-sp13_S_contig12468.2045.1|Name=mRNA_Ecto-sp13_S_contig12468.2045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
RGAGRGGGGGGRVRRGRRGSGSSSSDRSRGSSTSDYSSGSESDGAGGRRR
RQRRGGSKTGARRRSNSKTRGGPRSRSNSRTRPAPRSRSNSKTRGGARGN
SRTRPAPRSCSNSKTPGGPRSRSNSRTPGGGRRGGKHGGGHRKKGKSESG
SGSDSSSSSSSSSSASDGGRAAMRRAVKDWKVQNNIKGSVGKADKHLREE
MKRVRQQAKRAHRGLLGAPKK*
back to top

mRNA from alignment at Ecto-sp13_S_contig12468:1815..4845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12468.2045.1 ID=mRNA_Ecto-sp13_S_contig12468.2045.1|Name=mRNA_Ecto-sp13_S_contig12468.2045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12468:1815..4845+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGGAGCGGGCCGTGGCGGCGGTGGCGGGGGGCGGGTCAGGCGCGGCCG
CAGGGGCAGCGGCAGCAGCAGCAGCGACCGCAGCCGCGGCAGCAGCACCA
GCGACTACAGCAGCGGCAGCGAATCTGTAAGTCCGGGGCATAATGCTTGT
CTGTCCACTGTTGCACATACATAGGTCGCGGTAGCACCCCTCCTGCAGGG
CCGTAAGCGAACGGGCCAAAGGGAGGTATGAAGACGAAGAACTCTTTCGG
TCCAGACCGCGTCTTGCACTCGGAATATGGCACGCCGGGGGTTTCGGAGG
TGCGCAAGACAGCTTACACCAGCCTGCCGCATAGCAAACGGAATGACCGC
GGCAGAGAGATCTTCGAGTTCGTATACAAACCTCGGCGACCGAGTGGAAG
ACTCACCAGTCGAACAATCGACAAGCCTTGCTTTTCCGCCTCGTTTTGCT
TCAACAAGTGCCAAGCATGCACGAATGGCAAAAGCTGAAGACATGTCATC
ATCTCCGTCTGCAGATCAAAAGTGTGGTATGCTGCCGAGCAAGTGCAACC
GTTGCCCCCCAGCGCCAGGATCAGGCAAAACAGTTTATTACACCGTCGGC
TAAGTTGGAAGGAACGATTGGCCATCGGAGACCAGTCCTGTCGGCACAAG
GCTCCGTCCTCTCGAGGACGCGAGGTCTGTAAGGGGGAAACGCACCAACT
ATGTTTCCCTTTGATGATAATTGCCGTCGCCATTCATCTGTGTACGGTCT
GCTGTATCACTCCTTACACGCAGAGCAGCGCAGGGTCAAAGTGCATTTAA
CTCGTCAGTAGACTGCAGCTGTCGTTTACGCACCGTTAGCTGTTGGCTGT
TCTCCCAATTGCTGCACAACCATCCGCTATAAATATTGTACTCCCTGTCC
AATTTCGATAGGACGCGCTTCCGTTGAGTACATACATACCGACAACATAG
CAACTAGCATCAGGATCATGATCAACACCAACAAATGCACAACACCCAGG
ACGGGGCAGGTGGCAGGCGCCGGCGACAGCGACGCGGCGGTAGTAAGACG
GGGGCCCGCCGCCGCAGTAACAGCAAGACTCGGGGCGGCCCGCGCAGCCG
CAGCAACAGCAGGACTCGACCTGCCCCGCGCAGCCGCAGCAACAGCAAGA
CTCGAGGCGGTGCACGCGGCAACAGCAGGACTCGACCTGCCCCGCGCAGC
TGTAGTAACAGTAAGACCCCGGGCGGCCCGCGCAGCCGCAGCAACAGCAG
GACCCCGGGCGGGGGGCGCCGTGGGGGGAAGCATGGCGGTGGGCACAGGA
AGAAGGGCAAGAGCGAGAGCGGTAGCGGTAGCGATTCGGTGAGACTCTGG
GTTCCGTTCACTTGGCGTTTTCTTGCAGATCCCCTCGGTGAGTCTTCGTT
TCTGCGGCGGTTGCACCCCCACGCTTACCCCCGACATTTTGCCCGATTTG
ACGCACGTGCCGCGTAGCCGTTGTACCCCCCCCCCTCCCCTTCCAACCAC
CCGTGAGAAACAAGGACCCCCCCCCTCCTCCCTTTTTTTTTTGTCAGTCG
TCGTCGTCGTCTTCTTCTTCTTCTGCCTCGGATGGAGGCCGGGCCGCCAT
GAGGCGGGCTGTGAAGGACTGGAAGGTCCAGAACAACATCAAGGGTTCCG
TCGGCAAGGCGGACAAGCACCTCAGGGTACGACCGAAGTTGATCTCTCGA
GTTTCGTGAACGAATGCCCAGTAGCCTGCGCAGAGGCTTCCCAAGTGTTG
AAACGGCTACGTTGGGGGTTCGGGTCGCTTTCTGCGTCCCTCCTGCATGG
TCGTTTTTCGCAACAAACTTCGCTTTCGTTGCGTAGGCAGCCCGTAATAC
CGGCCGCCGCGATTTGGGGCTGTTCAGTTGTTGCTTTTGCAGCGGCTTCT
GAAATGCTGGCTGTTTTCTGCTGTCGTGGACGGCCAGAAGAGAGGCCCTC
GTCGGAAGAAGCGTCAAGAGAATCACTTTATTTTCTTCTTTATCAAAAAA
ATATTCTGCCGTCCGTGTTCGAAACTGCTGGCATTGGCACGAATAACGTT
GTGTTGCGGTCAACGCTTCCTGAATGTTGTGGGTACTTTTTGGAACGCCG
CAAATTGTGATGGCTGAAACTATTTCGAACACACCTGTGCTTCTGGTATC
CAGCGCCCCAACGCACAGGAACTCGTCTTTTTGCGCTGGCGTACATATCA
TCTTGTTGTTCAGATTTCTGAGGTAATGTTTTTCTGCCGTCGCAGACCAA
CAACAGAGGCCCCGCAGAGGAGCTGAGTGGGGGGAATGACAAACCCTAAT
TGACGCAATCTTCTCGTTTGTATGGCTGCTGATATGTAAATTTATGTCGT
ATACCCCGGCGGATACGTCAGGTATAGACGTCGATAGGCCTGTAAACCGG
CGCCAGAACAGATGAGACGAACATACACACAACACGCTTCATTGGGATGC
CAACGAATTTTTTTTTTACCTTCTCCCGTTCCACCTAGTTTGGGGAGGAG
TGTCCCAGCGAAAATAACACAGAGATGAAGTGTTGTGTATGCATGCTACG
GTTTTGGGGATGTTGCCCAAGGTTGCGGCCATCTCGCGACACTAGTACTG
GCAATTTCGTTCAGCTTTGTCCGCGAGAACTGAGCGCAACGATGGTACGA
CCCCGATAGCCACCAGCGCGCACGCACAACAGGAGAATCCCTTGTTGCTG
TCTGTTGGATAACTTGTGTTTTGTTTGTCTTGCGCAGGTCACTTCCCATT
CCTCTCTCTTCTGAAAAGCTATATTCCATCTTCTCCTCGTTCTTGCTCTC
TCTCTCTGACGGTTTCGTAGACCCTTGTTGATTCCCTTCCATTCTCACTT
TGACGGTCACATAGTAGCCACCTTCCCCGCCTCCCCAAAACCGTTTCGTT
GCTGTCGCTCTTCGTCGTTTACTTTTGTTTCCACGTTGTTGCTCTTGTCT
TTCTTGCAGGAGGAGATGAAGCGCGTCCGCCAGCAGGCCAAGCGTGCCCA
TCGGGGTTTGCTCGGCGCCCCCAAAAAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12468:1815..4845+

>mRNA_Ecto-sp13_S_contig12468.2045.1 ID=mRNA_Ecto-sp13_S_contig12468.2045.1|Name=mRNA_Ecto-sp13_S_contig12468.2045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12468:1815..4845+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGGAGCGGGCCGTGGCGGCGGTGGCGGGGGGCGGGTCAGGCGCGGCCG
CAGGGGCAGCGGCAGCAGCAGCAGCGACCGCAGCCGCGGCAGCAGCACCA
GCGACTACAGCAGCGGCAGCGAATCTGACGGGGCAGGTGGCAGGCGCCGG
CGACAGCGACGCGGCGGTAGTAAGACGGGGGCCCGCCGCCGCAGTAACAG
CAAGACTCGGGGCGGCCCGCGCAGCCGCAGCAACAGCAGGACTCGACCTG
CCCCGCGCAGCCGCAGCAACAGCAAGACTCGAGGCGGTGCACGCGGCAAC
AGCAGGACTCGACCTGCCCCGCGCAGCTGTAGTAACAGTAAGACCCCGGG
CGGCCCGCGCAGCCGCAGCAACAGCAGGACCCCGGGCGGGGGGCGCCGTG
GGGGGAAGCATGGCGGTGGGCACAGGAAGAAGGGCAAGAGCGAGAGCGGT
AGCGGTAGCGATTCGTCGTCGTCGTCGTCTTCTTCTTCTTCTGCCTCGGA
TGGAGGCCGGGCCGCCATGAGGCGGGCTGTGAAGGACTGGAAGGTCCAGA
ACAACATCAAGGGTTCCGTCGGCAAGGCGGACAAGCACCTCAGGGAGGAG
ATGAAGCGCGTCCGCCAGCAGGCCAAGCGTGCCCATCGGGGTTTGCTCGG
CGCCCCCAAAAAGTGA
back to top