mRNA_Ecto-sp13_S_contig8919.20448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A6H5L2V4_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V4_9PHAE) HSP 1 Score: 825 bits (2130), Expect = 3.260e-287 Identity = 571/796 (71.73%), Postives = 581/796 (72.99%), Query Frame = 1
Query: 10 MLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEIRGGGGDGGGDPSRSRDAGARGSSTIDPIGPGGGSVATNGGGPGFNDDPKPDVVPGEAGIAGGCCAPVGHVEGGECQLQPVVAGLGVCAGIGPPPAMAVATAAAVATHGRGMPPVGAAAAAPEVESSSPPALVPASASTLGTTAPAAVEGSNRWQVSDDNKRGVVSQTAIGSLTKTEATDPRKAAACYRELDKNVAGENGDGSASTGDAGAVHGRHLATSAATGAVEEAAGDRKDGGCGVILGPGGVAPATSSLLGQASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQQIGSKRPRPRLFVNTNVDVAGMYIGGHEQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAARAPHAVSMSAVPFGCPPGLGSSAAEAASXXXXXXXRYASGMAPVGNAPLPPMHYHXXXXXXXXXXXXXXXQPQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMGAAGRGEGVEVXXXXXXXXXXXXXXXXXXXXXDHPIAIPGTSVRRYMHVQLLLALMSAPGLRVVAPARVSWDRLGYYPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSPNSQFGSDPAAAALVPSKRPRPGTGPPVAGGGGXXXXXXXXXXXXXXXXXXXXXXXXG---------------------EVSIRETMPAIGGRG 2334
MLDPSQ + PWTEEE +IIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEIRGGGGDGG DPSRSRDAGARGSSTIDPIGP G SVATNGGGPGF DDPKPDVVP EA IAGGC APVGHVEGGECQLQPVVAGLGVC GIGPPPAMAVATAAAVATHG+GMPPVGAA AAP VES SPPALVP+SASTLGTTAPAAV+ +NRWQVSDDNKRGVV+QTAIGSLTKTEATDPRKAAACY ELDK VAGENGDGSASTGDAGAVHG HLATSAA+ AVEEA G RKDG CGV+LGPGGVAPATSSLL QASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQQIGSKRPRPRLFVNTNVD AGMYIGGHEQ XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX ARAPHAVSMSAVPFGCPPGLGSSAAE XXXXXXXXXXXXXXXXXXX DHPIAIPGTSVRRYMHVQLLLALMSAPGLRVV PARVSWDRLGYYPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSP SQFGSD AAAALVPSKR R GTGPPVA GGG XXXXXXXXXXXXXXXXXXXX EV +RETMPAIGGRG
Sbjct: 1 MLDPSQKNAPWTEEEITIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEIRGGGGDGGSDPSRSRDAGARGSSTIDPIGPRGESVATNGGGPGFYDDPKPDVVPREAVIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESPSPPALVPSSASTLGTTAPAAVDENNRWQVSDDNKRGVVNQTAIGSLTKTEATDPRKAAACYGELDKKVAGENGDGSASTGDAGAVHGWHLATSAASDAVEEAPGHRKDGSCGVVLGPGGVAPATSSLLEQASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQQIGSKRPRPRLFVNTNVDAAGMYIGGHEQQQHXXXXXXXXXXXXXXXXXXXXXXXXGFEADANAXXXXXXXXXXXXX---------ARAPHAVSMSAVPFGCPPGLGSSAAE---------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXGGDHPIAIPGTSVRRYMHVQLLLALMSAPGLRVVTPARVSWDRLGYYPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSPRSQFGSDSAAAALVPSKRARSGTGPPVAEGGGDSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVCVRETMPAIGGRG 652
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: D7FNQ9_ECTSI (Transcription factor C-MYB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ9_ECTSI) HSP 1 Score: 583 bits (1503), Expect = 4.740e-195 Identity = 341/471 (72.40%), Postives = 353/471 (74.95%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEIRGGGGDGGGDPSRSRDAGARGSSTIDPIGPGGGSVATNGGGPGFNDDPKPDVVPGEAGIAGGCCAPVGHVEGGECQLQPVVAGLGVCAGIGPPPAMAVATAAAVATHGRGMPPVGAAAAAPEVESSSPPALVPASASTLGTTAPAAVEGSNRWQVSDDNKRGVVSQTAIGSLTKTEATDPRKAAACYRELDKNVAGENGDGSASTGDAGAVHGRHLATSAATGAVEEAAGDRKDGGCGVILGPGGVAPATSSLLGQASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQQIGSKRPRPRLFVNTNVDVAGMYIGGHEQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSAARAPHAVSMSAVPFGCPPGLGSSAAEAAS 1413
WQHMLDPSQ + PWTEEEE+IIHDAHLRLGNRW+EIAKLLTGRTDSAVKNYWYTTAHKNIGRQN EIRGG GDG DPSRS D A GSS I+PIGPGG SVATNGG GF DDPKPD+VPGEAGIAGGC APVGHVEGGECQLQPVVAGLGVC GIGPPPAMAVATAAAVATHG+GMPPVGAA AAP VESSSPPALVP+ ASTLGTTAP AV+G+NRWQVSDDNKRGVVSQTAIGSLTKTEAT+PRKAAACY ELDK VAGENGDGSASTGDAGAVHGRHLATSA TGAVEEA G R+DG GV+LGPGGVAPATSSLL QASVVNAHAVSNTVTKSPPLPA XXXXXXX SAARAPHAVSMSAVPFGCPPGLGSSAAEAAS
Sbjct: 168 WQHMLDPSQKNAPWTEEEENIIHDAHLRLGNRWSEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNMEIRGGDGDGRSDPSRSGDTEATGSSNINPIGPGGESVATNGGASGFYDDPKPDIVPGEAGIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESSSPPALVPSLASTLGTTAPPAVDGNNRWQVSDDNKRGVVSQTAIGSLTKTEATNPRKAAACYGELDKKVAGENGDGSASTGDAGAVHGRHLATSATTGAVEEAPGHRRDGSRGVVLGPGGVAPATSSLLEQASVVNAHAVSNTVTKSPPLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------SAARAPHAVSMSAVPFGCPPGLGSSAAEAAS 591
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 7.060e-19 Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNK 195
W + LDPS PWT+EEE +I++A RLGN+WAEIAKLLTGRTD+A+KN+WY+T KN+ R+ K
Sbjct: 50 WLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.550e-18 Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNI 180
W + LDPS PWT EEE +I+DA RLGN+WAEIAKLLTGRTD+A+KN+WY+T KN+
Sbjct: 50 WLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN) HSP 1 Score: 84.0 bits (206), Expect = 2.020e-15 Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNI 180
W + LDP+ PW+E EES+I++A RLGN+WAEIAKLL GRTD+A+KN+WY+T +N+
Sbjct: 73 WLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.030e-15 Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEI 201
W + LDP+ PW+E EE II+DA RLGN+WAEIAKLL GRTD+A+KN+WY+T +N+ R KEI
Sbjct: 87 WLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEI 153
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: C5LKK2_PERM5 (Transcription factor MYB21, putative (Fragment) n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LKK2_PERM5) HSP 1 Score: 85.9 bits (211), Expect = 2.320e-15 Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKN 177
W + LDP + PWTEEE II +AH R GNRWAEIAKLL GRTD+A+KN WY+T +N
Sbjct: 115 WHNHLDPKVDKRPWTEEEHRIIFEAHNRFGNRWAEIAKLLPGRTDNAIKNLWYSTIRRN 173
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 6.290e-15 Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEI 201
W + LDP+ PW++ EE II+DA RLGN+WAEIAKLL GRTD+A+KN+WY+T +N+ R KEI
Sbjct: 98 WLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEI 164
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR) HSP 1 Score: 81.3 bits (199), Expect = 1.020e-14 Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKE 198
W + L+P N PWTEEE+ II+ AH GN+WA+IAKLL GRTD+A+KN+W +T + + R+ +E
Sbjct: 47 WHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHWNSTMRRKMERERRE 112
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Match: A0A7J6QS48_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QS48_PEROL) HSP 1 Score: 89.0 bits (219), Expect = 1.090e-14 Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 WQHMLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKEI 201
W + LDP N PWT EE II +AH R GNRWAEIAKLL GRTD+A+KN WY+T +N + ++E+
Sbjct: 59 WHNHLDPEVNKRPWTSEEHRIIFEAHRRFGNRWAEIAKLLPGRTDNAIKNLWYSTVRRNSRKISREV 125 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8919.20448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8919.20448.1 >prot_Ecto-sp13_S_contig8919.20448.1 ID=prot_Ecto-sp13_S_contig8919.20448.1|Name=mRNA_Ecto-sp13_S_contig8919.20448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=872bp MLDPSQNDTPWTEEEESIIHDAHLRLGNRWAEIAKLLTGRTDSAVKNYWYback to top mRNA from alignment at Ecto-sp13_S_contig8919:2969..6043- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8919.20448.1 ID=mRNA_Ecto-sp13_S_contig8919.20448.1|Name=mRNA_Ecto-sp13_S_contig8919.20448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3075bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8919:2969..6043- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8919:2969..6043- >mRNA_Ecto-sp13_S_contig8919.20448.1 ID=mRNA_Ecto-sp13_S_contig8919.20448.1|Name=mRNA_Ecto-sp13_S_contig8919.20448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8919:2969..6043- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |