mRNA_Ecto-sp13_S_contig89167.20446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig89167.20446.1
Unique NamemRNA_Ecto-sp13_S_contig89167.20446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: D7FVH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 3.610e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 MRCSKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGEV 165
            MRC+KKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPV  +V
Sbjct:  160 MRCNKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVMNDV 214
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A7S3YIG3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIG3_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 7.650e-18
Identity = 30/55 (54.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 MRCSKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGEV 165
            +R +K+G +APG +E + VDF+P E++YHYDC+R+HT+ ENLL+P+HAYP++ +V
Sbjct:   89 IRMNKRGTLAPGMAEHLKVDFYPSEYKYHYDCIRVHTEEENLLIPMHAYPIANDV 143
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A2J8A887_9CHLO (Primary ciliary dyskinesia protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A887_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 3.840e-16
Identity = 29/51 (56.86%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKGL+APG SE + V+F P+++RY+YDC+R+H + EN+L+P+HAYPV+ E
Sbjct:   83 NKKGLLAPGMSEEVVVEFCPQQYRYYYDCVRVHCEEENMLIPVHAYPVANE 133
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A7S0RXX1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RXX1_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 30/53 (56.60%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    7 CSKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGEV 165
            C KKG++APG SE + ++F P E RY+YDC+R+H++ ENLL+P+HAYPV  +V
Sbjct:  111 CEKKGVIAPGMSEDVRIEFVPTEWRYYYDCIRIHSEVENLLIPIHAYPVMNDV 163
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A7S0WP80_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WP80_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 7.320e-16
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKG +APG ++VI V+F PRE RY+YDC+R+H++ ENLLVPLHAYPV  E
Sbjct:   95 NKKGALAPGMADVIEVEFTPREFRYYYDCVRIHSEGENLLVPLHAYPVMNE 145
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A8J4FJA4_9CHLO (Uncharacterized protein n=4 Tax=Volvox TaxID=3066 RepID=A0A8J4FJA4_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 1.000e-15
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKGL+APG SE + V+F P  +RY+YDC+R+HT+ ENLLVP+HAYPV+ E
Sbjct:   94 NKKGLLAPGMSEEVVVEFCPSHYRYYYDCVRVHTEDENLLVPIHAYPVANE 144
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A835Y2F2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y2F2_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.370e-15
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKGL+APG SE I V+F P+++RY+YDC+R+H + ENLLVP+HAYPV+ E
Sbjct:   81 TKKGLLAPGMSEEIEVEFAPQQYRYYYDCVRVHCEEENLLVPIHAYPVANE 131
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: D8U8K9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8K9_VOLCA)

HSP 1 Score: 77.4 bits (189), Expect = 3.480e-15
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    7 CS-KKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            CS KKGL+APG SE + V+F P  +RY+YDC+R+H++ ENLL+P+HAYPV+ E
Sbjct:   92 CSNKKGLLAPGMSEEVVVEFCPSHYRYYYDCIRVHSEDENLLIPIHAYPVANE 144
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: PCDP1_CHLRE (Cilia- and flagella-associated protein 221 homolog n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=PCDP1_CHLRE)

HSP 1 Score: 76.6 bits (187), Expect = 6.470e-15
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKGL+APG +E + V+F P ++RY+YDC+R+H + ENLL+PLHAYPV+ E
Sbjct:  165 AKKGLLAPGMTEEVAVEFCPTQYRYYYDCVRVHCEEENLLIPLHAYPVANE 215
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BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Match: A0A2K3CMR7_CHLRE (Uncharacterized protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CMR7_CHLRE)

HSP 1 Score: 76.6 bits (187), Expect = 6.480e-15
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 SKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYPVSGE 162
            +KKGL+APG +E + V+F P ++RY+YDC+R+H + ENLL+PLHAYPV+ E
Sbjct:   94 AKKGLLAPGMTEEVAVEFCPTQYRYYYDCVRVHCEEENLLIPLHAYPVANE 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89167.20446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVH9_ECTSI3.610e-2892.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YIG3_HETAK7.650e-1854.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2J8A887_9CHLO3.840e-1656.86Primary ciliary dyskinesia protein 1 n=1 Tax=Tetra... [more]
A0A7S0RXX1_9CHLO5.500e-1656.60Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S0WP80_9CHLO7.320e-1664.71Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A8J4FJA4_9CHLO1.000e-1562.75Uncharacterized protein n=4 Tax=Volvox TaxID=3066 ... [more]
A0A835Y2F2_9CHLO1.370e-1562.75Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
D8U8K9_VOLCA3.480e-1560.38Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
PCDP1_CHLRE6.470e-1558.82Cilia- and flagella-associated protein 221 homolog... [more]
A0A2K3CMR7_CHLRE6.480e-1558.82Uncharacterized protein (Fragment) n=1 Tax=Chlamyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89167contigEcto-sp13_S_contig89167:263..439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score114.8
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7FVH9
Preferred nameCFAP221
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.cilium movement
EggNOG OGs28KJC@1,2QT0T@2759
Cds size177
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464164.8170953-CDS-Ecto-sp13_S_contig89167:262..4391681464164.8170953-CDS-Ecto-sp13_S_contig89167:262..439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89167 263..439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89167.20446.1prot_Ecto-sp13_S_contig89167.20446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig89167 263..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig89167.20446.1

>prot_Ecto-sp13_S_contig89167.20446.1 ID=prot_Ecto-sp13_S_contig89167.20446.1|Name=mRNA_Ecto-sp13_S_contig89167.20446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MRCSKKGLVAPGSSEVITVDFHPREHRYHYDCLRLHTDSENLLVPLHAYP
VSGEVGGR*
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mRNA from alignment at Ecto-sp13_S_contig89167:263..439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig89167.20446.1 ID=mRNA_Ecto-sp13_S_contig89167.20446.1|Name=mRNA_Ecto-sp13_S_contig89167.20446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89167:263..439- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTGCAGTAAGAAGGGGCTTGTTGCTCCTGGGTCGAGCGAGGTCAT
CACCGTCGACTTCCACCCTCGGGAGCACCGGTACCACTACGACTGCCTGC
GGCTGCACACGGACTCCGAAAACCTCCTGGTTCCTCTGCACGCCTACCCG
GTGAGTGGTGAGGTGGGGGGGAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig89167:263..439-

>mRNA_Ecto-sp13_S_contig89167.20446.1 ID=mRNA_Ecto-sp13_S_contig89167.20446.1|Name=mRNA_Ecto-sp13_S_contig89167.20446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89167:263..439- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTGCAGTAAGAAGGGGCTTGTTGCTCCTGGGTCGAGCGAGGTCAT
CACCGTCGACTTCCACCCTCGGGAGCACCGGTACCACTACGACTGCCTGC
GGCTGCACACGGACTCCGAAAACCTCCTGGTTCCTCTGCACGCCTACCCG
GTGAGTGGTGAGGTGGGGGGGAGGTAG
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