prot_Ecto-sp13_S_contig8915.20445.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8915.20445.1
Unique Nameprot_Ecto-sp13_S_contig8915.20445.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length714
Homology
BLAST of mRNA_Ecto-sp13_S_contig8915.20445.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI)

HSP 1 Score: 1095 bits (2832), Expect = 0.000e+0
Identity = 612/713 (85.83%), Postives = 639/713 (89.62%), Query Frame = 0
Query:    1 MLTTAIRGNGSWSTPLGRGQLHSTAVAAANNSQDCSTSPNPYKRRGLLRRRDPQPPRNFDIDRNSSCAGVRPPLLTSPVSSSLAPGGESPSWNSLSAPGTPRSNSPNKRPWYPAGRRPSSRDSGESGADDSAYVVHPSFRHLFTERAHSSGANDPSRSRQVHSQGPYHGASHGGGIGGSGGENSVRRPGTAAFSMGGGGPAYPSSTTEPTVARRSERPGEVKPAAAGRWRGVHFSQAKQNPPEQQHRDTTKKGIGSAPDAPSTQRGGERASFSPTDRSSVFRSKSDASPPRPCRNDHRSPREMGGQRPYAERETVEQEGAPLESVAAMRGRVRDMQARGGPRRKERGGRMPPADSRRGEEDPVLRSSAVFIGHSEQVLTLARREDILFSASADGTAKAWDTYSQQCLATYKGHQGAVWGMQVTGRTXXXXXXXXXXXXXXXXXXXSLCVLDLHSAVRDVVVVGDCLAVATSNPGVEIVELKRMRRHGTLEGHLLAVSALASLERENLLVSGSHDTFLRQERKLWDPDTLTCQAVLGGHGGTVGAICTVSWPQGGHGHAKGAGEEALIVSGSGDGTARVWGKHGVGDKGERDWTCRAVLEGHRHGVWAVHGSSLSGAFATGGGDATVKLWAPTTTNNAEHGDEEAERDNLGSGQSRRXXXXXXXXXXXRWELVGGVRGTAGAVGAVLIDEEALVFGTSEALIARFPLQLCMPAR 713
            MLTTAIRGNGSWS  LGRGQ HST VAAANNS DCSTSPNPYKRRGLLRR DPQP R FDIDRNSS  GVRPP LTSP S+S+APGG SPSWNSLSAPGTPRSNSP+KRPWYPA RRPSSRD+GESGADDSAYVVHPSFRHLFTERAHSS ANDPSRSRQV+SQGP+HGAS GGG+  SGGENS RRPGTA FS+GG  P+Y SST E TVARRSERPGEV+PA AGRWRGVHFS+AK +PPEQQ RDTT  GIGSAPDA S QRGGERASFSPTDR S F SKSDASP R   NDHRSPREMGGQRPY  RETVEQEGAPL++VAAMRGRVRDMQAR  PRR+ERGGRMPPADSRRGE DP LRSSAVFIGHSEQVL LAR EDILFSASADGTAKAWDT SQQCLATYKGH GAVWGMQVTGR XXXXXXXXXXXXXXX    SL VLDL SAVRDVV+VGD LAVATSNPG+EIVELKRMRRHGTLEGHLLAVSALASLE ENLLVSGSHDTF+R    +WDPDTLT +AVLGGHGGTVGAICTVSWPQGGH HAK A EEALIVSGSGDGTARVWG+ GVGDKG+R+WTCRAVLEGHRHGVWAV+GSSLSGAFATGGGDATVKLWAPTTTNNAEHG+EEAER NLGSG+SR  XXXXXXX    WELVGGVRGTAGAVGAVLIDE+ALVFGTSEALIARFPLQLCMPAR
Sbjct:    1 MLTTAIRGNGSWSAALGRGQSHSTVVAAANNSSDCSTSPNPYKRRGLLRRIDPQPQRKFDIDRNSSSTGVRPPSLTSPTSTSVAPGGGSPSWNSLSAPGTPRSNSPSKRPWYPASRRPSSRDNGESGADDSAYVVHPSFRHLFTERAHSSSANDPSRSRQVYSQGPHHGAS-GGGV--SGGENSGRRPGTAVFSVGGWDPSYSSSTKETTVARRSERPGEVEPATAGRWRGVHFSKAKHSPPEQQRRDTTT-GIGSAPDASSRQRGGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAPLKTVAAMRGRVRDMQARRRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFIR----VWDPDTLTSKAVLGGHGGTVGAICTVSWPQGGHDHAKRAAEEALIVSGSGDGTARVWGQQGVGDKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTTNNAEHGNEEAERGNLGSGESRHQXXXXXXX----WELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701          
BLAST of mRNA_Ecto-sp13_S_contig8915.20445.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 8.810e-219
Identity = 345/427 (80.80%), Postives = 366/427 (85.71%), Query Frame = 0
Query:    1 MLTTAIRGNGSWSTPLGRGQLHSTAVAAANNSQDCSTSPNPYKRRGLLRRRDPQPPRNFDIDRNSSCAGVRPPLLTSPVSSSLAPGGESPSWNSLSAPGTPRSNSPNKRPWYPAGRRPSSRDSGESGADDSAYVVHPSFRHLFTERAHSSGANDPSRSRQVHSQGPYHGASHGGGIGGSGGENSVRRPGTAAFSMGGGGPAYPSSTTEPTVARRSERPGEVKPAAAGRWRGVHFSQAKQNPPEQQHRDTTKKGIGSAPDAPSTQRGGERASFSPTDRSSVFRSKSDASPPRPCRNDHRSPREMGGQRPYAERETVEQEGAPLESVAAMRGRVRDMQARGGPRRKERGGRMPPADSRRGEEDPVLRSSAVFIGHSEQVLTLARREDILFSASADGTAK----AWDTY------SQQCLATYKGHQGAV 417
            MLTTAIRGN SWS PL RGQ +STAVAAAN+S DCS S NPYKRRGLLRRRDPQP R FDIDRNSS AGVRPPLLTSPVS+S+APGGESPSWNSLS PGTPRSNSPNKRPWYPAGRRPSSRDSGESGADDSAYVVHPSFRHLFTE AHSSGANDPSRSRQV+SQGP+HG+S GGG   S  ENS RRPGTA FS+GGG P+Y SSTTE TVAR+SER GEV+PAAAGRWRG HFS+A+ NP EQQHR+TT  GIGSAPDA S QRGGERASFSPT RSSVF S+SDASPPRP RNDHRSPREMGGQRPYAERETVEQ GAPLE VAAMR RVRDMQARG PRRKERGGRMPPADSRRGE DP LRSS VFIGHS+QVL LARREDILFSASADGTAK    +W  +      S     +  GH+GA+
Sbjct:    1 MLTTAIRGNQSWSAPLSRGQSYSTAVAAANDSPDCSMSSNPYKRRGLLRRRDPQPQRKFDIDRNSSSAGVRPPLLTSPVSTSVAPGGESPSWNSLSVPGTPRSNSPNKRPWYPAGRRPSSRDSGESGADDSAYVVHPSFRHLFTESAHSSGANDPSRSRQVYSQGPHHGSSRGGG---SXXENSGRRPGTAVFSVGGGDPSYSSSTTETTVARQSERSGEVEPAAAGRWRGAHFSKAEHNPREQQHRNTTTTGIGSAPDASSRQRGGERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEPVAAMRSRVRDMQARGRPRRKERGGRMPPADSRRGEGDPRLRSS-VFIGHSKQVLALARREDILFSASADGTAKVNQPSWSPFVASIGRSSNLCISLSGHEGAM 423          
BLAST of mRNA_Ecto-sp13_S_contig8915.20445.1 vs. uniprot
Match: A0A1X6NN76_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN76_PORUM)

HSP 1 Score: 60.8 bits (146), Expect = 4.290e-6
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 0
Query:  478 VELKRMRRHGTLEGHLLAVSALASLERENLLVSGSHDTFLRQERKLWDPDTLTCQAVLGGHGGTVGAICTVSWPQGGHGHAKGAGEEALIVSGSGDGTARVWGKHGVGDKGERDWTCRAVLEGHRHGVWAV 608
            ++++R     T    +  +        +NL+VSGS D  LR    +WD D   C AVL GH  +V  +C V    GG G   G  +   +VSGS D T RVW      D+GE    C AVL+GH   V  V
Sbjct:  167 IDVERFTEVSTFNSRVGGLLRELRSSEKNLVVSGSDDGTLR----VWDADRGECVAVLNGHSCSVSCVCVVEVGGGGDGVDCGC-KVQRVVSGSDDHTLRVWDA----DRGE----CVAVLKGHSDKVMCV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8915.20445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC03_ECTSI0.000e+085.83HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A6H5JEV4_9PHAE8.810e-21980.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NN76_PORUM4.290e-635.88Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 427..441
score: 43.36
coord: 567..581
score: 36.4
coord: 387..401
score: 40.0
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 403..440
e-value: 3.0E-8
score: 43.4
coord: 482..521
e-value: 9.0
score: 11.0
coord: 363..400
e-value: 0.2
score: 20.7
coord: 591..630
e-value: 1.3E-4
score: 31.3
coord: 528..580
e-value: 0.045
score: 22.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 405..440
e-value: 1.0E-6
score: 29.4
coord: 592..629
e-value: 0.049
score: 14.5
coord: 530..579
e-value: 0.011
score: 16.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 598..629
score: 10.475
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 370..409
score: 11.21
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 410..449
score: 12.781
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 356..484
e-value: 2.3E-27
score: 98.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 485..642
e-value: 1.9E-18
score: 68.3
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 367..579
coord: 564..634
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 427..441
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 387..401
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 370..639
score: 24.416
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 368..629

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8915contigEcto-sp13_S_contig8915:1052..4779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8915.20445.1mRNA_Ecto-sp13_S_contig8915.20445.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8915 1052..4779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8915.20445.1 ID=prot_Ecto-sp13_S_contig8915.20445.1|Name=mRNA_Ecto-sp13_S_contig8915.20445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=714bp
MLTTAIRGNGSWSTPLGRGQLHSTAVAAANNSQDCSTSPNPYKRRGLLRR
RDPQPPRNFDIDRNSSCAGVRPPLLTSPVSSSLAPGGESPSWNSLSAPGT
PRSNSPNKRPWYPAGRRPSSRDSGESGADDSAYVVHPSFRHLFTERAHSS
GANDPSRSRQVHSQGPYHGASHGGGIGGSGGENSVRRPGTAAFSMGGGGP
AYPSSTTEPTVARRSERPGEVKPAAAGRWRGVHFSQAKQNPPEQQHRDTT
KKGIGSAPDAPSTQRGGERASFSPTDRSSVFRSKSDASPPRPCRNDHRSP
REMGGQRPYAERETVEQEGAPLESVAAMRGRVRDMQARGGPRRKERGGRM
PPADSRRGEEDPVLRSSAVFIGHSEQVLTLARREDILFSASADGTAKAWD
TYSQQCLATYKGHQGAVWGMQVTGRTLITGSADGTVRFWDIETAQSLCVL
DLHSAVRDVVVVGDCLAVATSNPGVEIVELKRMRRHGTLEGHLLAVSALA
SLERENLLVSGSHDTFLRQERKLWDPDTLTCQAVLGGHGGTVGAICTVSW
PQGGHGHAKGAGEEALIVSGSGDGTARVWGKHGVGDKGERDWTCRAVLEG
HRHGVWAVHGSSLSGAFATGGGDATVKLWAPTTTNNAEHGDEEAERDNLG
SGQSRRQQQQQQQQQQQRWELVGGVRGTAGAVGAVLIDEEALVFGTSEAL
IARFPLQLCMPAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf