mRNA_Ecto-sp13_S_contig891.20439.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig891.20439.1
Unique NamemRNA_Ecto-sp13_S_contig891.20439.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig891.20439.1 vs. uniprot
Match: A0A6H5JTL8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL8_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.750e-47
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:   28 NEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEASSSFQGSREVVDGAYGAEEREGKSGSSAMKTPAPGDTQVAPDVRGFTPSVGVAGSRATASAVSSGPRNG 345
            NEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEA+SSF+GSREVV+GAYGAEEREGKS SSAMKTPAP DTQ+ PDVRGFTPSV VAGSRATA AVSS PR+G
Sbjct: 1018 NEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEAASSFRGSREVVEGAYGAEEREGKSRSSAMKTPAPEDTQMGPDVRGFTPSVRVAGSRATAGAVSSSPRSG 1123
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BLAST of mRNA_Ecto-sp13_S_contig891.20439.1 vs. uniprot
Match: D7G7P3_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.200e-37
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:   16 GGDGNEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEASSSFQGSREVVDGAYGAEEREGKSGSSAMKTPAPGDTQVAPD 264
            GG  NEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEASSSF+GSREVVD AYG EEREGKSG+SAMKTPAPGDTQVAPD
Sbjct:  982 GGGRNEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEASSSFRGSREVVDEAYGVEEREGKSGNSAMKTPAPGDTQVAPD 1064
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig891.20439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTL8_9PHAE7.750e-4789.62Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7P3_ECTSI5.200e-3792.77Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig891contigEcto-sp13_S_contig891:18529..18873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D7G7P3
Model size345
KEGG rclassRC00387
KEGG koko:K15777,ko:K17545
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.positive regulation of hh target transcription factor activity
EggNOG OGsKOG0597@1,KOG0597@2759
EC2.7.11.1
Cds size345
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464164.3689268-CDS-Ecto-sp13_S_contig891:18528..188731681464164.3689268-CDS-Ecto-sp13_S_contig891:18528..18873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig891 18529..18873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig891.20439.1prot_Ecto-sp13_S_contig891.20439.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig891 18529..18873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig891.20439.1

>prot_Ecto-sp13_S_contig891.20439.1 ID=prot_Ecto-sp13_S_contig891.20439.1|Name=mRNA_Ecto-sp13_S_contig891.20439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
PYCGGGGDGNEFAATALSFRRAAGCFSYPAPSERVSSSSWTLSAEASSSF
QGSREVVDGAYGAEEREGKSGSSAMKTPAPGDTQVAPDVRGFTPSVGVAG
SRATASAVSSGPRNG
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mRNA from alignment at Ecto-sp13_S_contig891:18529..18873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig891.20439.1 ID=mRNA_Ecto-sp13_S_contig891.20439.1|Name=mRNA_Ecto-sp13_S_contig891.20439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig891:18529..18873+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTATTGCGGCGGCGGCGGCGACGGAAACGAGTTCGCGGCGACTGCCTT
GAGCTTTCGGAGGGCGGCGGGCTGCTTCTCCTACCCCGCGCCGTCGGAGC
GCGTGTCCTCTTCGTCGTGGACGCTCTCGGCCGAAGCGTCGTCGAGCTTC
CAAGGTTCCCGGGAGGTCGTGGACGGGGCCTACGGTGCGGAGGAGAGGGA
AGGAAAGAGCGGGAGCAGCGCCATGAAGACTCCGGCACCGGGGGACACGC
AAGTGGCGCCTGACGTGCGTGGTTTTACGCCGTCCGTAGGGGTGGCGGGG
TCGAGGGCGACCGCCAGTGCCGTTAGTAGTGGTCCGAGAAACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig891:18529..18873+

>mRNA_Ecto-sp13_S_contig891.20439.1 ID=mRNA_Ecto-sp13_S_contig891.20439.1|Name=mRNA_Ecto-sp13_S_contig891.20439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig891:18529..18873+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTATTGCGGCGGCGGCGGCGACGGAAACGAGTTCGCGGCGACTGCCTT
GAGCTTTCGGAGGGCGGCGGGCTGCTTCTCCTACCCCGCGCCGTCGGAGC
GCGTGTCCTCTTCGTCGTGGACGCTCTCGGCCGAAGCGTCGTCGAGCTTC
CAAGGTTCCCGGGAGGTCGTGGACGGGGCCTACGGTGCGGAGGAGAGGGA
AGGAAAGAGCGGGAGCAGCGCCATGAAGACTCCGGCACCGGGGGACACGC
AAGTGGCGCCTGACGTGCGTGGTTTTACGCCGTCCGTAGGGGTGGCGGGG
TCGAGGGCGACCGCCAGTGCCGTTAGTAGTGGTCCGAGAAACGGG
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