mRNA_Ecto-sp13_S_contig12465.2043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 501 bits (1291), Expect = 1.510e-170 Identity = 290/309 (93.85%), Postives = 293/309 (94.82%), Query Frame = 1
Query: 1 VMVRGDPTAVRMGAVAGPEAATSRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXX------AVPSVADITIDDHPSVYHKIPTALLLGGCARGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNVRISTPTVDIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
+MVRG PTAVRMGAVAGPEAA SRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXX AV SVAD+TIDDHPSVYHKIPTALLLGGCARG EDLLLARR LSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDN RISTPTVD+FVRENLFPDAIS SQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELP LSLEELSRRNVCRFACTGRYVETAAIENALARV KLYASTAGGDPARLALAA
Sbjct: 260 MMVRGGPTAVRMGAVAGPEAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAA 568
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 1.630e-151 Identity = 241/292 (82.53%), Postives = 245/292 (83.90%), Query Frame = 1
Query: 34 MGAVAGPEAATSRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNVRISTPTVDIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
MGAVAG EAAT+RPALLVTIGPQCAGKTSLLRALAAKSE VYHKIPTALLLGGCARG EDLLLA+RPLSDRLGDPGCVETRLV FRLEGHISAEEFAGRLGECRGQASPAAIAALC AVESAVSDNVRISTPTVD+FVRENLFPDAIS SQERLAAAA DE+GLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFA TGRYVETAAIENALARV KLYASTAGGDPARLALAA
Sbjct: 1 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE--------------------------------------VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAA 254
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 194 bits (493), Expect = 5.750e-54 Identity = 122/280 (43.57%), Postives = 156/280 (55.71%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGR-LGECRGQASPAAIAALCW--AVESAVSDNVRISTPTVDIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
LL+TIGPQCAGKT+ L AL A + D+ IDDHP VY+K+PTA L + +D+LL + +S+R+ D V LVA RLEG ++A+EF + L P W AVE+AV+ +R+ TPTVD+FV +P + S RL G VAWGNTNT+++DYR ALE A+ RPVR+LRWGHELP + L +L R++ RFA TGRYV A+ AL RV LYA T GGDPA L AA
Sbjct: 94 LLITIGPQCAGKTTTLLALGQSLGGAR------------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAAVEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAA 349
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 174 bits (440), Expect = 5.660e-47 Identity = 114/283 (40.28%), Postives = 151/283 (53.36%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIA------ALCWAVESAVSDNVRISTPTVDIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
LL+TIGPQCAGKT+ LR + V D+ ID+HP VY+++PTA +L + ED+ + R LSDRL G LVA RLEG +S+ +F E + A P +A +VE+AV++ VR+ PTVD+F+ E P + L G VAWGNTNT+ARDY AL A+ RPV F+R+GHE+P +S+ EL RN+ RFA TGR++ + A RV LYA T GG+PARLA AA
Sbjct: 71 LLITIGPQCAGKTTTLRKM-------------------------------GVFDVAIDEHPDVYYELPTAYILDPTST-TLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEA---EWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAA 318
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 9.720e-16 Identity = 87/288 (30.21%), Postives = 117/288 (40.62%), Query Frame = 1
Query: 73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGG-------CARGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRL---------------------GECRGQASP-------AAIAALCWAVESAVSDNVRISTPTV----DIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFACTGRYV 816
P+LL+T+GPQCAGKT+LL+ L + P + D+ IDD +Y +P L L G + D L+ R LS R D VE+RLV L G E L C + A A + D V +P +F+ + L P AI S +RL + G VAWGNTN++ARD++ A+ A + GR V F+RWG EL + EEL RNV R G+YV
Sbjct: 87 PSLLITVGPQCAGKTTLLKHLNESRPSF----------------------APPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYV 350
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS) HSP 1 Score: 78.2 bits (191), Expect = 1.910e-12 Identity = 76/283 (26.86%), Postives = 121/283 (42.76%), Query Frame = 1
Query: 52 PEAATSRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCA----RGRTEDLLLARRPLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRG-----QASP------AAIAALCWAVESAVSDNV----------------RISTPT-VDIFVRENLF---------------PDAISCSQ-ERLA------AAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWG 738
P + S+ + +T+GPQC GKT++L+ L A DITIDD VY +P L L A + T + + + + DR+ DP E +LV RL G ++A +F RL + Q++P A +A L AVE + N +++ P +D+FV E++F P + + + +RL ++ D +AWGNTNT+ R++ A+E A +GRPV F+ +G
Sbjct: 94 PPSTQSKGPIYITVGPQCCGKTTILKRL---------------FGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERLNNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEVIKINTDPKGETTENSMFFAATKLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFG 361
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.940e-11 Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 568 NLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAG 879
+L P AI S +RL+ + G VAWGNTN++ARD++ A+ A + GR VRFLRWG EL + EEL RNV R G+YV AI AL R L AG
Sbjct: 102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12465.2043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12465.2043.1 >prot_Ecto-sp13_S_contig12465.2043.1 ID=prot_Ecto-sp13_S_contig12465.2043.1|Name=mRNA_Ecto-sp13_S_contig12465.2043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp MVRGDPTAVRMGAVAGPEAATSRPALLVTIGPQCAGKTSLLRALAAKSEAback to top mRNA from alignment at Ecto-sp13_S_contig12465:2..2782- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12465.2043.1 ID=mRNA_Ecto-sp13_S_contig12465.2043.1|Name=mRNA_Ecto-sp13_S_contig12465.2043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12465:2..2782- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12465:2..2782- >mRNA_Ecto-sp13_S_contig12465.2043.1 ID=mRNA_Ecto-sp13_S_contig12465.2043.1|Name=mRNA_Ecto-sp13_S_contig12465.2043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12465:2..2782- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |