prot_Ecto-sp13_S_contig12463.2042.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12463.2042.1
Unique Nameprot_Ecto-sp13_S_contig12463.2042.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.440e-68
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 107
            RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLAD+QVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:   64 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 170
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.290e-68
Identity = 104/107 (97.20%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 107
            ++LAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLAD+QVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS
Sbjct:   17 KKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 123
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.150e-37
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 0 
Query:    2 RLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQF 105
            ++ Y PDTKIP+AG F I KEDHTLGNL+RMQLL D+QVRFAGY+ PHPLEN + +KVQTNG+ TP+DALS A EDL+ E++ L + F E V A K   E  Q+
Sbjct:   18 KVDYEPDTKIPNAGNFIIKKEDHTLGNLIRMQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 108 bits (271), Expect = 1.680e-28
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 0 
Query:    2 RLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGL 85
            ++ Y PDTK+ +AGTF + KEDHT+GNLLRMQLL D QV+FAGYM PHPL N+IH+KVQT+     P ++LSAA EDLS E + L
Sbjct:   19 KIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: A0A6U1NZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZH5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.040e-27
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGLREVFQEQV 93
            ++L Y PDTKIP+AGTF + +EDHTLGNLLRMQLL D  VRFAGY  PHPL + + +K+QT      P+ A+S + EDLS E + L + F+E +
Sbjct:   17 KKLTYEPDTKIPNAGTFTLNREDHTLGNLLRMQLLQDSSVRFAGYQHPHPLVHHLLVKIQTTDPPANPIQAMSTSIEDLSSEFDFLEQRFKEDI 110
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: A0A7S4A5Q2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5Q2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.240e-26
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 0 
Query:    2 RLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAE 101
            R+ Y PD ++  AGTF I KEDHT+GNLLRMQLL D   RFAGY  PHPLE+  H+KV+T     PV+ +  A  DL QE+E L   F+++ A A+  A+
Sbjct:   18 RMTYEPDQRVASAGTFTINKEDHTVGNLLRMQLLRDGDTRFAGYQLPHPLEHVCHVKVETAPGRAPVEVMGGAVTDLRQEVELLDRGFRDECARAREEAD 117
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: A0A7R9WNF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNF7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.580e-26
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 0 
Query:    2 RLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEMEGLREVFQEQV 93
            ++ YT DTK+ +AGTF++ KEDHT+GNL RMQLL D  VRFAGY  PHPL + +++K+QTN     PV+ LS+A EDLS E + L   FQE +
Sbjct:   20 KIEYTADTKVTNAGTFKLNKEDHTVGNLFRMQLLRDPSVRFAGYYHPHPLVHFLNMKIQTNNSTVAPVEVLSSAIEDLSNETDHLTSQFQEAI 112
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: RPB11_DICDI (DNA-directed RNA polymerase II subunit rpb11 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=RPB11_DICDI)

HSP 1 Score: 103 bits (256), Expect = 2.920e-26
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQ 102
            +++    DTKIP+A  F I+KEDHT+GNL+RMQL+AD+ + FAGY  PHPLE+ ++I++QTN +  P++ +  + E LS+E   L   F EQV   ++ A+Q
Sbjct:   17 KKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNVADQ 118
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: F1A1H8_DICPU (RNA_pol_L_2 domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A1H8_DICPU)

HSP 1 Score: 103 bits (256), Expect = 2.920e-26
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAE 101
            +++  T DTKIP+A  F I+KEDHT+GNL+RMQL+AD  + FAGY  PHPLE+ ++I++QTN + TP+D++  + E L+ E   + + F+  V   KH A+
Sbjct:   17 KKVTMTRDTKIPNASMFVILKEDHTVGNLVRMQLVADPDIIFAGYRMPHPLEHNVNIRIQTNQNTTPLDSIKKSIECLTNEFLNIEDQFKTMVQRKKHMAD 117
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BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Match: F0Y9X2_AURAN (RNA_pol_L_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9X2_AURAN)

HSP 1 Score: 102 bits (255), Expect = 3.910e-26
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 0 
Query:    1 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHPLENKIHIKVQTNGDN-TPVDALSAATEDLSQEMEGLREVFQEQVAAAK 97
            +R+ Y  D KIP+AGTF I KEDHT+GNLLRMQ+L     +FAGY  PHPL N+  +K+QT   N TP+ A   A EDL  EM+ L   F+EQVA  K
Sbjct:   17 KRMTYKNDEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGAFQRAIEDLQSEMDILDRNFREQVAKKK 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12463.2042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D0_ECTSI2.440e-6899.07RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A6H5JST3_9PHAE4.290e-6897.20RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A836CIX8_9STRA7.150e-3761.54Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
K0SS38_THAOC1.680e-2862.35RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
A0A6U1NZH5_9STRA6.040e-2754.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4A5Q2_9STRA2.240e-2651.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WNF7_9STRA2.580e-2654.84Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
RPB11_DICDI2.920e-2646.08DNA-directed RNA polymerase II subunit rpb11 n=1 T... [more]
F1A1H8_DICPU2.920e-2646.53RNA_pol_L_2 domain-containing protein n=1 Tax=Dict... [more]
F0Y9X2_AURAN3.910e-2654.08RNA_pol_L_2 domain-containing protein n=1 Tax=Aure... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..88
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 2..103
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 2..103
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..106
e-value: 1.4E-37
score: 129.9
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 4..94
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 16..86
e-value: 1.2E-27
score: 95.5
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 19..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12463contigEcto-sp13_S_contig12463:3020..4444 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12463.2042.1mRNA_Ecto-sp13_S_contig12463.2042.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12463 3020..4444 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12463.2042.1 ID=prot_Ecto-sp13_S_contig12463.2042.1|Name=mRNA_Ecto-sp13_S_contig12463.2042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADKQVRFAGYMQPHP
LENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAA
EQEQFGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS