mRNA_Ecto-sp13_S_contig89.20398.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig89.20398.1
Unique NamemRNA_Ecto-sp13_S_contig89.20398.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig89.20398.1 vs. uniprot
Match: A0A6H5JKD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD5_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 7.080e-67
Identity = 217/252 (86.11%), Postives = 223/252 (88.49%), Query Frame = -2 
Query:   10 VPTAGAASGKGGGGVGFGSTGEGVAGVSGQLFRITPSPERPSGVTCSSXXXXXXXXXXXXXXXXXXXXXVAYPGTGSALQYQQPRRGVSLADTSCSSTASLSSGGXXGLTSGDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-IGGDLRGVSGAGLNGIGNGLEGVGDRGGSGDARGFRMGIGSGGVVPAYRGMRGEGGAYDDEATAGGGGSALSRT-DGLELQRHQQL 759
            VP AGAAS       GFGS GEGVAGVSGQLFRI+PSPER S +TCS XXXXXXXXXXXXXXXXXXXX VAYPGTG+A QYQQPRRGVSLADTSCSSTASLSSGG  GLTSGDP X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A IGGDLRGVSGAGLNGIGNGLEGVGD GGS DARG RMG+GSG ++PAYRGMRGEG  YDDEATAGG GSALSR  DGLELQRHQQL
Sbjct:  434 VPVAGAASXXXXXXXGFGSMGEGVAGVSGQLFRISPSPERSSVITCSXXXXXXXXXXXXXXXXXXXXXIVAYPGTGNAFQYQQPRRGVSLADTSCSSTASLSSGGGSGLTSGDPSXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAIGGDLRGVSGAGLNGIGNGLEGVGDNGGSVDARGSRMGMGSGAIIPAYRGMRGEGAGYDDEATAGGDGSALSRAADGLELQRHQQL 685
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89.20398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKD5_9PHAE7.080e-6786.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89contigEcto-sp13_S_contig89:4734..5493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size762
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_001510.2
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.771395-UTR-Ecto-sp13_S_contig89:4733..48451681464161.771395-UTR-Ecto-sp13_S_contig89:4733..4845Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig89 4734..4845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.7820473-CDS-Ecto-sp13_S_contig89:4845..54931681464161.7820473-CDS-Ecto-sp13_S_contig89:4845..5493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89 4846..5493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89.20398.1prot_Ecto-sp13_S_contig89.20398.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig89 4846..5493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig89.20398.1

>prot_Ecto-sp13_S_contig89.20398.1 ID=prot_Ecto-sp13_S_contig89.20398.1|Name=mRNA_Ecto-sp13_S_contig89.20398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MPRYAGTTPPEPIPILKPRASPLPPLSPTPSKPLPIPFNPAPETPLRSPP
MAAAAAAAATPPSITPPVLLRLMCAAAAAAASTSGWAWRLVAAASAEPPL
PLGSPDVRPLPPPLLSDAVDEHDVSASDTPRRGCWYWRALPVPGYATAAA
AADDERDSTIPPPPPPAAEEQVTPEGLSGEGVIRNSCPLTPATPSPVDPN
PTPPPPLPDAAPAVGT
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mRNA from alignment at Ecto-sp13_S_contig89:4734..5493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig89.20398.1 ID=mRNA_Ecto-sp13_S_contig89.20398.1|Name=mRNA_Ecto-sp13_S_contig89.20398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89:4734..5493+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCTGCAGCTGCTGATGTCGCTGCAGCTCCAAGCCGTCAGTACGCG
ACAACGCACTCCCGCCGCCGCCCGCCGTCGCTTCGTCGTCGTACGCCCCG
CCTTCTCCGCGCATGCCGCGATACGCCGGAACAACGCCCCCAGAACCTAT
CCCCATCCTGAAGCCTCGCGCATCCCCGCTCCCCCCCCTGTCACCGACGC
CTTCCAAACCGTTGCCGATTCCGTTCAACCCTGCACCGGAAACCCCCCTG
AGGTCCCCCCCGATGGCTGCTGCGGCCGCAGCAGCCGCTACCCCTCCGAG
CATCACGCCCCCCGTGCTGCTCCGCCTCATGTGTGCCGCCGCCGCCGCCG
CCGCTTCCACGAGTGGGTGGGCGTGGCGTCTAGTGGCCGCGGCATCAGCG
GAGCCGCCGCTGCCGCTTGGATCTCCAGACGTCAGGCCGCTGCCTCCGCC
GCTGCTCAGTGACGCCGTCGACGAGCACGACGTATCAGCCAGCGACACTC
CACGACGCGGCTGCTGGTACTGGAGGGCACTGCCCGTGCCAGGATACGCT
ACTGCTGCTGCCGCCGCGGATGACGAGCGTGATTCCACAATACCACCACC
ACCGCCGCCGGCCGCGGAAGAGCAAGTGACTCCCGAGGGTCTCTCCGGGG
AAGGGGTTATTCGAAACAGCTGTCCGCTTACTCCGGCGACCCCCTCCCCC
GTGGACCCAAACCCTACCCCCCCTCCACCTTTACCTGATGCCGCCCCTGC
GGTTGGAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig89:4734..5493+

>mRNA_Ecto-sp13_S_contig89.20398.1 ID=mRNA_Ecto-sp13_S_contig89.20398.1|Name=mRNA_Ecto-sp13_S_contig89.20398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89:4734..5493+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGATACGCCGGAACAACGCCCCCAGAACCTATCCCCATCCTGAA
GCCTCGCGCATCCCCGCTCCCCCCCCTGTCACCGACGCCTTCCAAACCGT
TGCCGATTCCGTTCAACCCTGCACCGGAAACCCCCCTGAGGTCCCCCCCG
ATGGCTGCTGCGGCCGCAGCAGCCGCTACCCCTCCGAGCATCACGCCCCC
CGTGCTGCTCCGCCTCATGTGTGCCGCCGCCGCCGCCGCCGCTTCCACGA
GTGGGTGGGCGTGGCGTCTAGTGGCCGCGGCATCAGCGGAGCCGCCGCTG
CCGCTTGGATCTCCAGACGTCAGGCCGCTGCCTCCGCCGCTGCTCAGTGA
CGCCGTCGACGAGCACGACGTATCAGCCAGCGACACTCCACGACGCGGCT
GCTGGTACTGGAGGGCACTGCCCGTGCCAGGATACGCTACTGCTGCTGCC
GCCGCGGATGACGAGCGTGATTCCACAATACCACCACCACCGCCGCCGGC
CGCGGAAGAGCAAGTGACTCCCGAGGGTCTCTCCGGGGAAGGGGTTATTC
GAAACAGCTGTCCGCTTACTCCGGCGACCCCCTCCCCCGTGGACCCAAAC
CCTACCCCCCCTCCACCTTTACCTGATGCCGCCCCTGCGGTTGGAACA
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