prot_Ecto-sp13_S_contig887.20363.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig887.20363.1
Unique Name	prot_Ecto-sp13_S_contig887.20363.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	842

Homology

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A6H5JSE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE9_9PHAE)

HSP 1 Score: 972 bits (2512), Expect = 0.000e+0
Identity = 683/848 (80.54%), Postives = 702/848 (82.78%), Query Frame = 0

Query:    1 MVIEAGDARAQDSQRDSRRPGPDTPKPLEDPKVGEVVLQDLATQEIKRVRRTESSHSPPAAAASAAAVDGLPENGVTPADQRQQQPRPNGGGKAEGEEKSGLGGTGKKGTSAGGSEPQTAESKGDGQGEEDPRPKVGXXXGAAEESSGGDEGVRAEGESTKPNGVAVAGAXXXXXXXXXXXXXXXLPKSPAVDLPSSSSSPSSSGAEESPSFVSDRKTAVQARSSEGARPGPEAGHETKRKAAEGXXXXXXXXXXXXEGAGEERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXG-DEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVEDVVQGNEK-----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGISSNGNTASGEGKDAGTTADQGRSHDRLNQQQERPEYLGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADAIAAAATANHDRDRGFPPTGGSSGGERAGVAAAVEASGSRPDEEDGDVEMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAGAGEDGRVAAAGAPGSRVARGCAGGGSSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLRK 841
            MVIEAG A AQ+S+RDSRRPGP+TPKPLEDPKV EVV QDLATQEIKR                                  +QQPRPNGGGKAEGEEKSGLG  GK+ TSAGGSEPQTA SKG    ++DP PKVG    AA ESSGGDEGVRAEG+STKPNGVAVAGA               LPKS AVDLPSS+SS SSSG  ESPS  SDRKTAV+ARSSEGARPGPEA  ET       XXXXXXXXXXX EGAGEERRT S+CPDHALPVARTFFDFEAVS LEMRMLPEFFTGRSASKT EMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINT AVG+RPASYS+APPATHLWNQT RSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXX AERG GRG                    XXXX  DEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTP ECMQRFLSLAVEDVVQGNEK     P  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G   S+   ASGEGKDAGT  DQG S +R NQQQ+RP+YLGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADA+ AAATANHDRDRGFPP GGS GG RAGV AAVE SGSRP EEDGD+EMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAG  EDGRVA  GAPGSR ARGCAGG SSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSML K
Sbjct:  322 MVIEAGGAGAQESERDSRRPGPETPKPLEDPKVDEVVSQDLATQEIKR----------------------------------RQQPRPNGGGKAEGEEKSGLGKLGKERTSAGGSEPQTAGSKG----KQDPPPKVGGSGNAAGESSGGDEGVRAEGKSTKPNGVAVAGAASSSPSKAAGAMPPPLPKSSAVDLPSSTSSLSSSGPGESPSSTSDRKTAVKARSSEGARPGPEARKETXXXXX--XXXXXXXXXXXEEGAGEERRTISQCPDHALPVARTFFDFEAVSDLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTRAVGQRPASYSIAPPATHLWNQTPRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGVGRGDGGGKPGALRAQQRAGLGSGXXXXXXDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPVECMQRFLSLAVEDVVQGNEKLPAAVPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG---SSAGAASGEGKDAGTIPDQGGSQNRPNQQQQRPDYLGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADAVTAAATANHDRDRGFPPAGGSGGGFRAGVPAAVEESGSRPGEEDGDLEMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAG--EDGRVAVGGAPGSRAARGCAGGSSSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 1124

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: D8LMT7_ECTSI (Phasmid Socket Absent family member (Psa-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT7_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 8.240e-94
Identity = 185/215 (86.05%), Postives = 186/215 (86.51%), Query Frame = 0

Query:  627 MSAAAEAADAIAAAATANHDRDRGFPPTGGSSGGERAGVAAAVEASGSRPDEEDGDVEMPDVKDLAGPAPRSRPGEPPAVDTAPVAANGGGAGAGAGEDGRVAAAGAPGSRVARGCAGGGSSASLSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLRK 841
            MSAAAEAADA+AAAATAN DRDRGFPPTGGS GGERAGVAAAVE SGSRP EEDGDVEMPDVKDL GPAPRSRPGEPPAVDTAPVAANGG AGAG  EDGRVAAAGAPGS                    GLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSML K
Sbjct:    1 MSAAAEAADAVAAAATANQDRDRGFPPTGGSGGGERAGVAAAVEGSGSRPGEEDGDVEMPDVKDLTGPAPRSRPGEPPAVDTAPVAANGGEAGAG--EDGRVAAAGAPGSXXXXXXX------XXXXXXXGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQRLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLPK 207

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: D8LMT8_ECTSI (Internalin protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT8_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.550e-80
Identity = 150/175 (85.71%), Postives = 154/175 (88.00%), Query Frame = 0

Query:  222 ARSSEGARPGPEAGHETKRKAAEGXXXXXXXXXXXXEGAGEERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGP 396
            ARSSEGARPGPEAG ETKR+AAEG     XXX    EGAGEE+RTTS CPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKT EMYMQSRNYMVRSYQRMLEVDPDGQAFL GTECRRKLAGDACSILRIHDFL RF L+NT  VGKRPASYS+APPA HLW  T RSAGP
Sbjct:  387 ARSSEGARPGPEAGKETKRQAAEGEDKGKXXXAE--EGAGEEKRTTSPCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTPEMYMQSRNYMVRSYQRMLEVDPDGQAFLMGTECRRKLAGDACSILRIHDFLHRFRLLNTRTVGKRPASYSLAPPAPHLWKHTPRSAGP 559

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A7K9VSU1_9PASS (SMRC2 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K9VSU1_9PASS)

HSP 1 Score: 109 bits (272), Expect = 4.140e-21
Identity = 75/246 (30.49%), Postives = 110/246 (44.72%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ +V  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H        +G                               RG GRG                           REW  +E +LL+EA     + W+ V+  V G RT  EC+  FL L +ED
Sbjct:  227 EDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG---LVPLQPKTPQVGAGGPTATPPCGPPVPPRGAGRGVGPGGWGMHSFDPKAAASAT-------REWTEQETLLLLEALEMYKDDWNKVSEHV-GSRTQDECILHFLRLPIED 455

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A7K9I750_9AVES (SMRC2 protein (Fragment) n=1 Tax=Bucco capensis TaxID=135168 RepID=A0A7K9I750_9AVES)

HSP 1 Score: 107 bits (268), Expect = 3.430e-20
Identity = 75/249 (30.12%), Postives = 111/249 (44.58%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHL---WNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ +V  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H    W QT+ S                                 + FG                             REW  +E +LL+EA     + W+ V+  V G RT  EC+  FL L +ED
Sbjct:  333 EDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFXLPWQQTSASQ----------------QMLNFPDKSKEKPADMQNFG-------LRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHV-GSRTQDECILHFLRLPIED 551

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A8C4NHU1_EPTBU (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NHU1_EPTBU)

HSP 1 Score: 107 bits (268), Expect = 3.740e-20
Identity = 73/247 (29.55%), Postives = 111/247 (44.94%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHA-VGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ ++  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GL+N       RPA+    PP +H        +G                               + FG                          G  REW  +E +LL+E    + + W+ V+  V G RT  EC+  FL L +ED
Sbjct:  420 EDNVTDQMHHIIIPSYAAWFDYNSIHAIERRALPEFFNGKNKSKTPEVYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLMNYQVDTDSRPAAMG-PPPTSHFHVLVDTPSGLVPLQPKTTPVASVQPTPNTAEKAKEKPTDMQNFG------------LRTDMYNKKSKSSAGGSREWTDQETLLLLEGLELHKDDWNKVSEHV-GSRTQDECILHFLRLPIED 646

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A401PQ13_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PQ13_SCYTO)

HSP 1 Score: 106 bits (264), Expect = 4.240e-20
Identity = 72/246 (29.27%), Postives = 108/246 (43.90%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ +V  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H        +G                               + FG                             REW  +E +LL+EA     + W+ V+  V G RT  EC+  FL L +ED
Sbjct:   97 EDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKAPQTSASQQMLNFPDKNKEKAADMQNFG-------LRTDMYAKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHV-GSRTQDECILHFLRLPIED 328

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: UPI00103B4145 (SWI/SNF complex subunit SMARCC2-like isoform X1 n=4 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103B4145)

HSP 1 Score: 105 bits (263), Expect = 4.960e-20
Identity = 72/247 (29.15%), Postives = 109/247 (44.13%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDE-REWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ ++  +E R LPEFF  ++ SKT E+Y+  RN+M+ +Y+    ++P    +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H    +   +G                              E G G                          G   REW  +E +LL+EA   + + W+ VA  V G RT  EC+  FL L +ED
Sbjct:    8 EDNVTDQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNAKNKSKTPEIYLAYRNFMIDTYR----LNPT--EYLTSTACRRNLAGDVCAIMRVHGFLEQWGLINYQIEAESRPTAMGPPPTSHFHVLSDTPSGLQPLVARPPQPRPAENAAVPKVEAGLPNGTEAGAGAPPALKHEPGIELGAMPGLKLDQYRGGARGREWTEQETLLLLEALELHRDDWNRVAAHV-GTRTQDECILHFLRLPIED 247

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BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: A0A7K4SHG0_COLPI (SMRC2 protein (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4SHG0_COLPI)

HSP 1 Score: 106 bits (264), Expect = 6.040e-20
Identity = 72/246 (29.27%), Postives = 108/246 (43.90%), Query Frame = 0

Query:  263 ERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            E   T +     +P    +FD+ +V  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H        +G                               + FG                             REW  +E +LL+EA     + W+ V+  V G RT  EC+  FL L +ED
Sbjct:  374 EDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQTSASQQMLNFPDKSKEKPADMQNFG-------LRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHV-GSRTQDECILHFLRLPIED 605

[Close]

BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Match: UPI001C3F9C68 (SWI/SNF complex subunit SMARCC2 isoform X1 n=2 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3F9C68)

HSP 1 Score: 107 bits (266), Expect = 6.780e-20
Identity = 75/258 (29.07%), Postives = 113/258 (43.80%), Query Frame = 0

Query:  259 GAGEERRTTSRCPDHA--------LPVARTFFDFEAVSGLEMRMLPEFFTGRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDACSILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERGFGRGXXXXXXXXXXXXXXXXXXXXXXXXGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQRFLSLAVED 508
            G GE+ + T    D+         +P    +FD+ +V  +E R LPEFF G++ SKT E+Y+  RN+M+ +Y+    ++P  Q +LT T CRR LAGD C+I+R+H FL+++GLIN     +   +    PP +H        +G                               + FG                             REW  +E +LL+EA     + W+ V+  V G RT  EC+  FL L +ED
Sbjct:  404 GKGEQTKNTDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYR----LNP--QEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKAPQSSASQQMLNFPDKNKEKTADMQNFGLRTDMYAKKNVPSKSKAAACAT-------REWTEQETLLLLEALEMYKDDWNKVSEHV-GSRTQDECILHFLRLPIED 647

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig887.20363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JSE9_9PHAE	0.000e+0	80.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LMT7_ECTSI	8.240e-94	86.05	Phasmid Socket Absent family member (Psa-1) n=1 Ta...	[more]
D8LMT8_ECTSI	1.550e-80	85.71	Internalin protein n=1 Tax=Ectocarpus siliculosus ...	[more]
A0A7K9VSU1_9PASS	4.140e-21	30.49	SMRC2 protein (Fragment) n=2 Tax=Neognathae TaxID=...	[more]
A0A7K9I750_9AVES	3.430e-20	30.12	SMRC2 protein (Fragment) n=1 Tax=Bucco capensis Ta...	[more]
A0A8C4NHU1_EPTBU	3.740e-20	29.55	SWI/SNF related, matrix associated, actin dependen...	[more]
A0A401PQ13_SCYTO	4.240e-20	29.27	Uncharacterized protein (Fragment) n=1 Tax=Scylior...	[more]
UPI00103B4145	4.960e-20	29.15	SWI/SNF complex subunit SMARCC2-like isoform X1 n=...	[more]
A0A7K4SHG0_COLPI	6.040e-20	29.27	SMRC2 protein (Fragment) n=1 Tax=Columbina picui T...	[more]
UPI001C3F9C68	6.780e-20	29.07	SWI/SNF complex subunit SMARCC2 isoform X1 n=2 Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 780..812
None	No IPR available	GENE3D	1.10.10.60		coord: 457..508 e-value: 2.2E-9 score: 38.9
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 267..835
None	No IPR available	PANTHER	PTHR12802:SF41	BRAHMA ASSOCIATED PROTEIN 155 KDA	coord: 267..835
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 458..507 e-value: 5.3E-5 score: 32.6
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 461..504 e-value: 1.7E-5 score: 24.9
IPR032451	SMARCC, C-terminal	PFAM	PF16495	SWIRM-assoc_1	coord: 768..836 e-value: 4.9E-13 score: 48.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 279..371 e-value: 2.5E-27 score: 96.7
IPR007526	SWIRM domain	PFAM	PF04433	SWIRM	coord: 279..366 e-value: 6.4E-20 score: 71.3
IPR007526	SWIRM domain	PROSITE	PS50934	SWIRM	coord: 273..376 score: 18.417
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 457..509 score: 9.579
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 459..513
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 273..373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig887	contig	Ecto-sp13_S_contig887:14740..20618 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig887.20363.1	mRNA_Ecto-sp13_S_contig887.20363.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig887 14399..20636 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig887.20363.1 ID=prot_Ecto-sp13_S_contig887.20363.1|Name=mRNA_Ecto-sp13_S_contig887.20363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=842bp
MVIEAGDARAQDSQRDSRRPGPDTPKPLEDPKVGEVVLQDLATQEIKRVR
RTESSHSPPAAAASAAAVDGLPENGVTPADQRQQQPRPNGGGKAEGEEKS
GLGGTGKKGTSAGGSEPQTAESKGDGQGEEDPRPKVGGSGGAAEESSGGD
EGVRAEGESTKPNGVAVAGAASSSSSKAAGAMPPPLPKSPAVDLPSSSSS
PSSSGAEESPSFVSDRKTAVQARSSEGARPGPEAGHETKRKAAEGESKGK
GKGKGAEEGAGEERRTTSRCPDHALPVARTFFDFEAVSGLEMRMLPEFFT
GRSASKTQEMYMQSRNYMVRSYQRMLEVDPDGQAFLTGTECRRKLAGDAC
SILRIHDFLDRFGLINTHAVGKRPASYSVAPPATHLWNQTTRSAGPPPPV
RRAAATTGGQGGASAAAAAPTTTTAERGFGRGDGGGEAGARRAQQRAGLG
SGAGGGGDEREWRREELVLLMEAAVANPNRWDAVARQVAGGRTPAECMQR
FLSLAVEDVVQGNEKPPAAVPAAAAAAAAGTGATVEEATGSTAAAGGWGG
AAAAGQQAATAGGISSNGNTASGEGKDAGTTADQGRSHDRLNQQQERPEY
LGPEVPALVLASALVSSVHPEVLKAAMSAAAEAADAIAAAATANHDRDRG
FPPTGGSSGGERAGVAAAVEASGSRPDEEDGDVEMPDVKDLAGPAPRSRP
GEPPAVDTAPVAANGGGAGAGAGEDGRVAAAGAPGSRVARGCAGGGSSAS
LSSSAGGLELATAARAAVLSVAGLQARGLAEQEERRTEALLADLLEARVQ
RLEAKLHCFDELDQVLETERACLEHDRAELVFEQARSMLRK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR032451	SMARCC_C
IPR036388	WH-like_DNA-bd_sf
IPR007526	SWIRM
IPR017884	SANT_dom
IPR009057	Homeobox-like_sf