mRNA_Ecto-sp13_S_contig8862.20356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8862.20356.1
Unique NamemRNA_Ecto-sp13_S_contig8862.20356.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8862.20356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8862contigEcto-sp13_S_contig8862:4782..5376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size434
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464158.3211107-CDS-Ecto-sp13_S_contig8862:4781..48561681464158.3211107-CDS-Ecto-sp13_S_contig8862:4781..4856Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8862 4782..4856 +
1681464158.334052-CDS-Ecto-sp13_S_contig8862:5017..53741681464158.334052-CDS-Ecto-sp13_S_contig8862:5017..5374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8862 5018..5374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8862.20356.1prot_Ecto-sp13_S_contig8862.20356.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8862 4782..5374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8862.20356.1

>prot_Ecto-sp13_S_contig8862.20356.1 ID=prot_Ecto-sp13_S_contig8862.20356.1|Name=mRNA_Ecto-sp13_S_contig8862.20356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
SGCFRCPRRTTRQPFECRLTKKAYRCSPPTRTRSALPPAPIPVLAHVHEA
IELDFSVLSLRLPEPAPRCRRIDHLRHGLQAGAVHIRSSGGAWYKPLLPP
GYHISDRETSVRQIAVGRWVLGLSTRMPTWHGGKTLGLDLKELS
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mRNA from alignment at Ecto-sp13_S_contig8862:4782..5376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8862.20356.1 ID=mRNA_Ecto-sp13_S_contig8862.20356.1|Name=mRNA_Ecto-sp13_S_contig8862.20356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=595bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8862:4782..5376+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGTGTTTTCGATGTCCGCGGCGCACGACTCGACAGCCGTTTGAGTG
TCGTCTAACTAAGAAGGCGTATCGAGTGCCACAACGGCAACGGAGACATT
TGCGGCGGGGGCAGGATAGGCGTAAGCAGAGTTGCCGTGTCGATGGTTCT
CTTTGTGCCAGGCTACGATACGGTCATCGGCAGTGCCGCCACTTGTATAT
ATCACTGTCACTGTCATGTACGAATTCTTGGTTGAGTGCTCACCTCCAAC
TCGGACACGGTCAGCTCTTCCTCCAGCTCCTATTCCTGTCCTTGCCCACG
TCCACGAGGCAATCGAGCTCGATTTCTCGGTGCTGAGCCTCAGGCTCCCC
GAACCCGCACCTCGTTGTCGACGCATCGACCATCTGCGTCACGGCCTCCA
GGCGGGTGCCGTACACATCAGAAGCTCAGGGGGGGCGTGGTATAAGCCGC
TGTTACCTCCCGGCTACCACATTTCCGATCGGGAGACAAGTGTGAGACAA
ATCGCGGTGGGACGCTGGGTATTGGGCCTGTCAACACGAATGCCCACCTG
GCATGGCGGAAAAACACTTGGCCTGGACCTTAAGGAGTTATCTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8862:4782..5376+

>mRNA_Ecto-sp13_S_contig8862.20356.1 ID=mRNA_Ecto-sp13_S_contig8862.20356.1|Name=mRNA_Ecto-sp13_S_contig8862.20356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8862:4782..5376+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGTGTTTTCGATGTCCGCGGCGCACGACTCGACAGCCGTTTGAGTG
TCGTCTAACTAAGAAGGCGTATCGATGCTCACCTCCAACTCGGACACGGT
CAGCTCTTCCTCCAGCTCCTATTCCTGTCCTTGCCCACGTCCACGAGGCA
ATCGAGCTCGATTTCTCGGTGCTGAGCCTCAGGCTCCCCGAACCCGCACC
TCGTTGTCGACGCATCGACCATCTGCGTCACGGCCTCCAGGCGGGTGCCG
TACACATCAGAAGCTCAGGGGGGGCGTGGTATAAGCCGCTGTTACCTCCC
GGCTACCACATTTCCGATCGGGAGACAAGTGTGAGACAAATCGCGGTGGG
ACGCTGGGTATTGGGCCTGTCAACACGAATGCCCACCTGGCATGGCGGAA
AAACACTTGGCCTGGACCTTAAGGAGTTATCT
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