mRNA_Ecto-sp13_S_contig8858.20353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8858.20353.1
Unique NamemRNA_Ecto-sp13_S_contig8858.20353.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: D8LJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 9.840e-80
Identity = 139/198 (70.20%), Postives = 150/198 (75.76%), Query Frame = 2
Query:   44 MASNVPETPTDLPPGWEAIRAGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVVDGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPE 637
            MAS++P   TDLPPGWEA RAGD+WVY+NHVTKTTQW  PI+A PIP    TN VARAQARIG PAEQPRDR++ SGASDA P D RG+ ED ESLP+GWE Q VDGRVLYIDHVNK TTYTKPT GADD  RRS SGMS        XXXXX       DGGGEPPLP  WTAEKTA GKV Y+NH H+TT WE PE
Sbjct:    1 MASDMP---TDLPPGWEAKRAGDQWVYLNHVTKTTQWEKPIVAKPIPPPVVTNPVARAQARIGSPAEQPRDRVIASGASDAPPPDQRGMSEDTESLPAGWERQFVDGRVLYIDHVNKATTYTKPTKGADDGRRRSASGMSXXXXXXXXXXXXXXXXXXXXDGGGEPPLPDEWTAEKTADGKVFYINHKHKTTSWERPE 195          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A6H5JUP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.710e-19
Identity = 71/240 (29.58%), Postives = 104/240 (43.33%), Query Frame = 2
Query:   74 DLPPGWEAIRAGDRWVYVNHVTKTTQWNAP--------IMADPIPRSYATNQVARAQARIGF-----------PAEQPRDRLMPSGASDASPLDHRGVPEDKES---------LPSGWESQVVDGRVLYIDHVNKVTTYTKPT----------------------TGADDEYRRSGSGMSGASGGYGSXXXXXAP--AALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPE 637
            DLP  WEA     R VY+NH T+TTQW+ P          A+P+  +++ +   RA                 PA   + RL  +  S++ P  +   P    S         LP+GWES+++DGRV+YIDH N+ T++ +P                        G +     +G+   G+S G         P  A+ +    G+ PLPPGW    T  G+V YVNH  +TT W  P+
Sbjct:   15 DLPQNWEARDVKGRIVYINHTTRTTQWSKPKFSTKKRAATAEPVASAHSKSASGRAXXXXXXXXXXXXXSAARPAAATQTRLGGASVSNSVPWSNLPAPAGVASRALTTVSSPLPAGWESKIIDGRVVYIDHTNQRTSFERPRGQAGGLPQQPRPLSARRQMGIDVGGELVPHSNGAENLGSSRGSHGSGHVIDPIYASNASSAAGDSPLPPGWGRSVTRQGEVYYVNHVSKTTTWSRPQ 254          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI0006D4FF7E (E3 ubiquitin-protein ligase Nedd-4 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4FF7E)

HSP 1 Score: 90.9 bits (224), Expect = 2.030e-17
Identity = 65/197 (32.99%), Postives = 89/197 (45.18%), Query Frame = 2
Query:   77 LPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVA--RAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDK-----ESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            LPPGWEA + A  R  YVNH+ ++TQW+ P +      SY   + A    Q R     ++     + +G   +S L + G  E       E LP GW  Q+  +GRV +IDH  K TT+  P TG      +            G+         L GD G   PLP GW       G++ +++HN RTT WE P L
Sbjct:  199 LPPGWEARQDANGRTYYVNHLARSTQWDRPSINTENSSSYQNLETAVTEFQRRFHISVDE-----VDTGRRRSSVLSNSGSEEQSNISGSEGLPEGWGLQIAPNGRVFFIDHNAKATTWVDPRTGRASAMPQQ----------TGNVTHIHNSIGLDGDLG---PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 377          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A1B6ER03_9HEMI (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6ER03_9HEMI)

HSP 1 Score: 88.2 bits (217), Expect = 1.640e-16
Identity = 70/218 (32.11%), Postives = 93/218 (42.66%), Query Frame = 2
Query:   77 LPPGWEAIR-AGDRWVYVNHVTKTTQWNAP-------------------------IMADPIP---RSYATNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            LPPGWE  + A  R  YVNHV +TTQW  P                         I AD      RS  T+ V++A   +  P  QPR    P  A +A  +  R  P  +E LP GW  QV  +GRV +IDH ++ TT+  P TG            + A               ++G      PLP GW     + G++ +++HN RTT WE P L
Sbjct:   59 LPPGWEERQDANGRTYYVNHVARTTQWERPTLLNESSVNTQNLESAATEFQRRFHISADDNESNRRSSVTSNVSQASEVVDSPT-QPRPESQPQPAEEAPTV--RTDPS-REGLPQGWSLQVAPNGRVFFIDHNSRATTWVDPRTGRASPMPNQREAANVA-------------RRVAGPDDELGPLPEGWEERVHSDGRIFFIDHNTRTTQWEDPRL 259          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI000BA80ECF (E3 ubiquitin-protein ligase NEDD4-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80ECF)

HSP 1 Score: 87.8 bits (216), Expect = 2.360e-16
Identity = 73/235 (31.06%), Postives = 95/235 (40.43%), Query Frame = 2
Query:   23 GPWPEI*MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIP-----RSYATNQVARAQARIGFPAEQPRDRL----------------MPSGASDASPLDHRGVPE------DKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            GP   + M S+    P  LP GWE  + A  R  YVNHV +TTQW+ P  A PI      RS A+ Q  R +  I        +R                  P+    + P+    V +        E LP+GW  QV  +GRV +IDH  K TT+  P TG         +                 P   S D  G  PLP GW       G++ +++HN RTT WE P L
Sbjct:  202 GPAQPVMMPSST-TAPPSLPTGWEERQDANGRTYYVNHVARTTQWDRPTGATPIEEQVQQRSLASAQEFRRRVHISVDRSDENERRDNSETLSQILESQRAETPNNRRHSEPIPANMVSQLTNLQISSEGLPAGWTMQVAPNGRVFFIDHNLKSTTWVDPRTGRPSPLPNQNN-------------VPNRPRFDSVDDLG--PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 420          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI000BA7E995 (E3 ubiquitin-protein ligase NEDD4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7E995)

HSP 1 Score: 86.7 bits (213), Expect = 3.380e-16
Identity = 67/235 (28.51%), Postives = 89/235 (37.87%), Query Frame = 2
Query:   23 GPWPEI*MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYA---------------------------TNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            GP   + M S+    P  LPPGWE  + A  R  YVNH+ +TTQW  P    PI                                T+  A  Q      AE P +R       D        +    E LP+GW  Q+   GR+ +IDH +K TT+  P TG    +    +                 P   S D  G  PLP GW       G++ +++HN RTT WE P +
Sbjct:   78 GPVQPVMMPSSA-TAPPSLPPGWEERQDANGRTYYVNHIARTTQWERPTGTTPIEEQVQQRSLDSAREFRRRVHISVDRTDEIEQRTSSEALTQILESQQAETPTNRRHSEPIPDNMVQQLAALRISSEGLPAGWTMQIAPSGRIFFIDHNSKATTWVDPRTGRPSSFPNQNN-------------VPNKPKFESVDDLG--PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRM 296          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A834F672_ORYME (HECT-type E3 ubiquitin transferase n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834F672_ORYME)

HSP 1 Score: 85.9 bits (211), Expect = 1.170e-15
Identity = 65/216 (30.09%), Postives = 91/216 (42.13%), Query Frame = 2
Query:   65 TPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARA------------QARIGFPAEQ-------PRDRLMPSGASDASPLDH---RGVPEDKESLPSGWESQVVD-GRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            T   LPPGWE  R A  R  YVNH T+TT W+ P++  P   + + +    A             A +  P+E        P   + PS   D  PL H        +  S+P+GWE +  + GR+ +IDH  K TT+  P      + RR  S                 P+ L        PLPPGW     + G+V Y++HN + T W+ P L
Sbjct:  680 TSAGLPPGWEEKRDAKGRRYYVNHNTRTTSWSKPVIQRPSETAASASLAPTAPXXXXXXXXTSPSAALRVPSESGAPLSRSPTITIQPSAPED--PLPHGTSTNATFESGSMPAGWEVRHANNGRLFFIDHNTKTTTWEDPRLKVPVQVRRKSS---------------TDPSDLG-------PLPPGWEERVHSDGRVFYIDHNTKITQWDDPRL 871          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A224X9S9_9HEMI (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A224X9S9_9HEMI)

HSP 1 Score: 84.0 bits (206), Expect = 4.500e-15
Identity = 63/203 (31.03%), Postives = 90/203 (44.33%), Query Frame = 2
Query:   71 TDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARA-----QARIGFPAEQPRDRLMPSGASDASPLDHRGVPE------DKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
            + LPPGWE  + A  R  YVNHV ++TQW+ P M +       ++Q+  +     Q R    A++       S    +S L  +G  E        + LP GW  Q+  +GRV +IDH +K TT+  P TG      + G          G+           GD G    LP GW       G++ +++HN RTT WE P L
Sbjct:  141 SSLPPGWEERQDANGRTYYVNHVARSTQWDRPTMNNE--NRNTSHQILESAATEFQRRFHISADE-----ADSSRRRSSVLSCQGTEETCQGISSADGLPEGWGLQIAPNGRVFFIDHNSKATTWVDPRTGRASAMPQPG----------GNTSHIRNSVTADGDLGS---LPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 323          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI0008F9C561 (E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=4 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C561)

HSP 1 Score: 84.0 bits (206), Expect = 5.010e-15
Identity = 67/224 (29.91%), Postives = 96/224 (42.86%), Query Frame = 2
Query:   44 MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIM--ADPIPRSYATNQVARA-QARIGFPAEQPR--------DRLMPSGA--------SDASPLDHRGVPEDKES----LPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
               NV E P  LPPGWE  + A  R  YVNH+ ++TQW  P +  +  +P + +    A   Q R    A+  R        D +  S A        S+++P+ H  V  ++ +    LP+GW  QV  +GRV +IDH  + TT+  P TG            S              P    G      PLP GW     +  ++ +++HN RTT WE P L
Sbjct:  245 FVGNV-EQPNALPPGWEERQDANGRTYYVNHIARSTQWERPTLQQSQEVPNNQSLETAATEFQRRFHISADNDRRENSLQSTDSVDSSTAVAAAATPTSNSTPVVHTPVSTNQNTSGAGLPAGWSLQVAPNGRVFFIDHNTRATTWVDPRTGRASPMPNQSHSTS--------EEHRQEPEDELG------PLPEGWEERVHSDNRIFFIDHNTRTTQWEDPRL 453          
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A087UMD0_STEMI (Uncharacterized protein (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UMD0_STEMI)

HSP 1 Score: 82.8 bits (203), Expect = 8.290e-15
Identity = 70/224 (31.25%), Postives = 89/224 (39.73%), Query Frame = 2
Query:   59 PETPTDLPPGWEAIRAGD-RWVYVNHVTKTTQWNAPIMADPIP-----RSYATNQVARAQARIGFPA-----EQPRD------------RLMPSGASDASPLDH-----RGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPELD 643
            P   + LPPGWE  +  + R  YVNH  +TTQW  P  A         RS  + Q  R +  I         + PRD            RL PS    + P +             E LP+GW  QV  +GRV YIDH +K TT+  P TG         S                 P   S D  G  PLP GW       G++ +++HN R T WE P L+
Sbjct:  203 PSNHSPLPPGWEERQDNNGRTYYVNHAARTTQWERPTGAPQSEEEIQQRSLESAQEFRRRVHISIDHSDEVNDHPRDNIEILRNMLEAQRLDPSVRRHSMPTNSLTRQSSSNQSSSEGLPTGWSMQVAPNGRVFYIDHNSKTTTWVDPRTGKPSVLPNQSS-------------VPNRPRFSSVDDLG--PLPEGWEERFHTDGRIFFIDHNSRITQWEDPRLN 411          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ33_ECTSI9.840e-8070.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUP4_9PHAE1.710e-1929.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0006D4FF7E2.030e-1732.99E3 ubiquitin-protein ligase Nedd-4 n=1 Tax=Halyomo... [more]
A0A1B6ER03_9HEMI1.640e-1632.11HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
UPI000BA80ECF2.360e-1631.06E3 ubiquitin-protein ligase NEDD4-like isoform X1 ... [more]
UPI000BA7E9953.380e-1628.51E3 ubiquitin-protein ligase NEDD4-like n=1 Tax=Lim... [more]
A0A834F672_ORYME1.170e-1530.09HECT-type E3 ubiquitin transferase n=2 Tax=Oryzias... [more]
A0A224X9S9_9HEMI4.500e-1531.03HECT-type E3 ubiquitin transferase (Fragment) n=2 ... [more]
UPI0008F9C5615.010e-1529.91E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=4 ... [more]
A0A087UMD0_STEMI8.290e-1531.25Uncharacterized protein (Fragment) n=1 Tax=Stegody... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8858contigEcto-sp13_S_contig8858:594..4220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score266.5
Seed ortholog evalue1e-68
Seed eggNOG ortholog2880.D8LJ33
Model size679
KEGG koko:K14961,ko:K19868
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons6
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5021@1,COG5271@1,KOG0940@2759,KOG1808@2759
Cds size636
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8858.20353.1prot_Ecto-sp13_S_contig8858.20353.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8858 594..4177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464158.0182323-CDS-Ecto-sp13_S_contig8858:593..7181681464158.0182323-CDS-Ecto-sp13_S_contig8858:593..718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 594..718 -
1681464158.0321302-CDS-Ecto-sp13_S_contig8858:1270..14301681464158.0321302-CDS-Ecto-sp13_S_contig8858:1270..1430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 1271..1430 -
1681464158.0431218-CDS-Ecto-sp13_S_contig8858:1851..19071681464158.0431218-CDS-Ecto-sp13_S_contig8858:1851..1907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 1852..1907 -
1681464158.0541394-CDS-Ecto-sp13_S_contig8858:2576..27721681464158.0541394-CDS-Ecto-sp13_S_contig8858:2576..2772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 2577..2772 -
1681464158.065146-CDS-Ecto-sp13_S_contig8858:3529..35851681464158.065146-CDS-Ecto-sp13_S_contig8858:3529..3585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 3530..3585 -
1681464158.0761933-CDS-Ecto-sp13_S_contig8858:4134..41771681464158.0761933-CDS-Ecto-sp13_S_contig8858:4134..4177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8858 4135..4177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464158.0876455-UTR-Ecto-sp13_S_contig8858:4177..42201681464158.0876455-UTR-Ecto-sp13_S_contig8858:4177..4220Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8858 4178..4220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8858.20353.1

>prot_Ecto-sp13_S_contig8858.20353.1 ID=prot_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MASNVPETPTDLPPGWEAIRAGDRWVYVNHVTKTTQWNAPIMADPIPRSY
ATNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGW
ESQVVDGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSSA
GAAAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPELD
LAPAAAATCET*
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mRNA from alignment at Ecto-sp13_S_contig8858:594..4220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8858.20353.1 ID=mRNA_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8858:594..4220- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGGCACCCTTCCTTGGTGTGGGCCGTGGCCGGAAATTTAAATGGCGT CTAACGTCCCGGAGACGCCAACTGACCTACCACCAGGTAAGGACCAGTGT CCTAGGTATGGCCTGCCTCGACTCTATTACATGACACGGAACGGGACACC CTCTAAGAAATGTCAAAGTCAGGTCAAGGATATTTTCTTGTCTAGCCTAT TAGGTACGGAACGGGTCAGCATCTAGGATGTAAAAGTCGGGTCGAGGATC AATTTGTTGTATTTCGTCGTCGCCGTATGACCACAGGAGGGCGTTTTGTA CAGAAGAAGAGGAGTCTCTCGAAGTCCCTTTCCTGCTGTCCAGTATCACG AAGGGAGAGACACGACGAGCGAAGACTCGCCATCAAAACCAATATACGGT CTTCACGTCTCGCGGACCCACTCGAACACCCAGGTTGCCCCCGCAGGCCC TATAGATCAAAACTTTTCTACCGGGTACCCCCAATCGGGGGTGGATGGAG AGCTCGCTCGAAACGCCAACACCCTCCCCCATTCGTTGCTTGCTCGCAAC ACTTGATTTAGCGATCAGGCTAACCCCGTTTTGCCCCGGGCATCCTCGTA ATGTTTTTGTGCCGGTTCCCTTGATGGGAGCACAGGTTGGGAAGCTATTA GAGCTGGCGATCGATGGGTATACGTGAACCATGTCACCAAGGTGAGCTCG GGTGCGAGGGGGTTTGAGAAGGCTCTTCAAACCAGGAGGAGAGAGGCACA AGTCAACCCATTGCGCCCCGGTGTGCCTGTCCTCATCGCGCCGAAAGCAG TACCCGGTCGACGTTGGCGCCCCAAACATTCCAGATTTTGAGTTTCGTTC TTTTTTTTTGGCGTTGGGTGAGCACATATTATGCCAGAAGTGGGGTTTGG CAAAGACATACCAATGGACACGAACGTACGACATATGGTGTAGCTAATTG GTTGCGTAATCCGGCAGGATCCCTTCGCGTGGGGAGCAATTCTAGTATAT ACGAGGCCCTGTGGAACTATTGATCAATGGATGCTATGTAGCACCACCAT CGTGTTTGACAGTATGTACTCCGTGGATGATGTCGGAGTAGATGTGATAT CAGGACGGCTGGACGCTGGGTGCTGCCTCTTTTGTACGCGTGGGGGGAGG GAGAGGGGTCGTGCCGCCATCTCCAACAAGGGCCACTCAAGAGTTACCGA TGCGCACCTGACTACGTACGTGCACAACCGCTGCCATGTCTCTTTCACGC ACAAAGGGGCCACAAACCACACCGTCAACGAATGAACACCGCCCTCGAGA GCAATAAGTCAGGAAGAAAACGGCGCTCGTGTCTGGACGGTTGGGTCCGT GCAAGGGCCCGAATAATACCTGTGATTACCATACACGCATCTATTCATCC ACACACTCCCCTAACACCCCCCCTCCACCACTACGAAACACCTCACAGAC CACACAGTGGAACGCGCCGATCATGGCCGACCCGATTCCGCGTTCCTATG CTACAAACCAAGTGGCCCGAGCCCAAGCCCGGATCGGGTTCCCGGCCGAA CAGCCCAGGGACAGATTGATGCCCAGCGGGGCAAGTGATGCATCTCCCCT CGACCACAGGGGTGTGCCGGAGGACAAGGAATCGCTTCCTTCAGGTGCGA GAGATAGCGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATTCC TGTCTCCGCTGAGGGGGGGTGGGCGTGCGCCTCGCCTTTNNNNNNNNNNG GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCA GGGGCGACGTTCGTTGATTCCCCGTTGTGAAGGTTGGCCGTTGGCTGATC ATCTGTTTCCGAGGCAGACGAGCACTCGTGTCGTTCCTACTCGGCTGTGG CGAACCCTCTATGTCTTTTCCGTTAAGTTCGACACAAATGAATGTCTGAA ATGTTGGCTATCCTGTCCCCTTCATTGGGAGCCTGTTTTGGAGGCGTGTT TTGGAGTGGACGGGGAGAGAGGGCAAGTGTTTCTAGCAGGACTTGGAGGC GATGAAGCCGCTCCCGGATGGGACTGCTACAGCTTGCATGTACATACCGA CTGTTCGGACCGCACGCTACCCGTGACAAGTTTTCCTCACCACTAGTGCG TCCCCAATACTATGGTCGGCATGAACTGCCGCTCTCTGTCTCCCCCCTCC CTTCCACCGCATGCTTGCGCTTATGCTGTACATCTATACGTTCTCTTGCT TGCTTTCCCCCCCCGCCCTCCTTCCCTCTCATCGCGGAACCTCCCGCACC TTTGTTTTTTTAGGGTGGGAAAGCCAGGTCGTAGACGGCAGGGTGTTGTA CATCGACCACGTCAACAAGGTGACTCGATATTTTGCCGGAAGGAACATGT CGTACAGGGATAGTACAGGATAGGGGTGTGTGTGTGTTCTCCACGTCGTC AGAGATGCCAATTGGGAGTTGTTGTAAGTTCCTAGCCCCGACAAACGAGG TTTCCGCGTTTTTGATAGTCATGGCTGGTAAGTGCAACTCTCCCTCGCCG GCATCTGAGAAGCGAGAGGTATACACCTGCATCCCCGCACACTTACCGAT GCTTCCCGCGAGGAGGGGGGGCGGGGGCGTGTACTCATACTAGTGCATGC CGTAGTCGTTAGACCGTTGACCTTGTATCCCGGGGGGGGGGTGCATTTTG GCCCGCCCGCACCAACTACCAGTCGTAGAGGAGTGAGTCTGATTTGCGGT GGCGATGCTGTTGTCGTTGCTCCCCTCGTTCTCGGCACAGGTCACCACCT ACACCAAGCCAACGACGGGGGCCGATGATGAATACCGGCGCTCGGGCAGC GGCATGTCCGGCGCCAGCGGTGGTTACGGGAGCTCTGCGGGGGCCGCCGC TCCCGCTGCCTTGAGTGGCGATGGTGGCGGAGAGCCGCCGCTGCCCCCGG GTACGTGTAAGGGGGAGACGTTCAGATGCGAAAGGAGCAAACGAGCGGGG GGCACCACGGGTGTGCTTTGTGCGAAGCAGCAGCGTTGCGTGTTTTTTTT TTCCCTGACTCTGCTGTGAACTAGGCTCTGGCTCCCTACGTATTTGAAAC CACACACGCACGAACACGAAGCTTTTCCTACCCGACCTCTCGCTTAACCG TTCATTCCCGCCTTGGCCGCTCCCGGCGGGCGTCTGTCGTCCACGCCCTT TGAGCTCCGGGTGTGCCCTGTGATGGGTCGTGTTACCCGTTTAGAATCTG TGGGCAAGGGGCCCAGTTTCAGGGGGTGTCGGCGGCGGGGAGGGTTTGGC TACTGGATAGAGGGCAATCACAACGGAATCGCCAAACGCGAGACGTTCGT TCGGAAACCGCGAAAGAGGCAGTAGTGAAACAGCGGTACGTTAGCAGCAA CCACCTCGGACAACAGCGAGAGACTAGCGACCAACGTCTAGGCCGTGCCC CCTCTCGATACCGCTTCCGCCGTGTCCTTCCTCGTGACTTGACTCAACGC AGGGTGGACCGCCGAAAAGACAGCCGGCGGCAAGGTGTCCTACGTGAACC ATAATCACAGAACCACCCACTGGGAAATGCCGGAACTAGACCTGGCTCCC GCTGCTGCTGCTACCTGTGAGACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8858:594..4220-

>mRNA_Ecto-sp13_S_contig8858.20353.1 ID=mRNA_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8858:594..4220- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCTAACGTCCCGGAGACGCCAACTGACCTACCACCAGGTTGGGA
AGCTATTAGAGCTGGCGATCGATGGGTATACGTGAACCATGTCACCAAGA
CCACACAGTGGAACGCGCCGATCATGGCCGACCCGATTCCGCGTTCCTAT
GCTACAAACCAAGTGGCCCGAGCCCAAGCCCGGATCGGGTTCCCGGCCGA
ACAGCCCAGGGACAGATTGATGCCCAGCGGGGCAAGTGATGCATCTCCCC
TCGACCACAGGGGTGTGCCGGAGGACAAGGAATCGCTTCCTTCAGGGTGG
GAAAGCCAGGTCGTAGACGGCAGGGTGTTGTACATCGACCACGTCAACAA
GGTCACCACCTACACCAAGCCAACGACGGGGGCCGATGATGAATACCGGC
GCTCGGGCAGCGGCATGTCCGGCGCCAGCGGTGGTTACGGGAGCTCTGCG
GGGGCCGCCGCTCCCGCTGCCTTGAGTGGCGATGGTGGCGGAGAGCCGCC
GCTGCCCCCGGGGTGGACCGCCGAAAAGACAGCCGGCGGCAAGGTGTCCT
ACGTGAACCATAATCACAGAACCACCCACTGGGAAATGCCGGAACTAGAC
CTGGCTCCCGCTGCTGCTGCTACCTGTGAGACGTGA
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